TCONS_00059890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059890
Unique NameTCONS_00059890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059890 ID=TCONS_00059890|Name=TCONS_00059890|organism=Clytia hemisphaerica|type=transcript|length=1523bp
TGGGCGTTCAGTGTATCGTGCGCATGATGGAAGTTTTTGTCCAAGCAGGA
GTGTACGCGGCACGTGATTAGACAAAAGAAGTTctcgttgacgtcaaata
aaacaataaaatatttgacgtcacaaACAacatattaaaaaaacgtgATG
CCAAAAAATCGATAACACTTTGCACTTACGATATCATGGAAATCATCTCA
TGTCTCTTCAATGGCCGATGAGAACCAACAAACTTCTAAACAACACAAGA
GAAAATCGCTTCTTAATAACTTCAATCTTCGTAATATTTTTCGTAAACCG
ACCAACAATATGTCTCAACCATCCAGCAAAACCACCGTAAACGGAGCTAG
CGCAAACAGTGAACCACCGAAAGATACACCAGCTACCAATACTCAAACAC
CTAAGAAGGAGTCTACTACTAAACCAACAACCGCTACTGACAATGCAACA
GCAGGAGCTACCGCTGGACAAGCAGCAACGTCTAGCAGCTCCAAACAAGA
TGCTGCTCAAGCCGCACCAAAGCCTCAGCCTCAAACGGCATTCGATTCGG
CTGCAGCTTTGCTTGCTCAATACGGTTATGGGTTAGGAGAACAACTTGGC
AAAGGTAGTTACGCTATTGTAAGAGCTGCCACATCTAAAAAACACAAACG
TCGTGTCGCTATCAAAATTATTTCGAAGAAAAAGGCACCCGAGGACTATT
TGACTAAATTTTTACCACGCGAGATACAAGTCTTAAAACGTTTGCGTCAC
CCGAATTGTATTTCCTTATTGGAGGCCATCGAAACCAACACCCGTATCTA
TTTGATCATGAACCTTGCCGAGAACGGTGACCTCTTGGAGTATATACGTG
AACGTGGTCCAATGCCAGATGAAGATGCCCGAAAATACTTTCGAAACTTG
ATTACGGCTATTGAGTATTTCCATTCCCTTGGAATCGTTCACAGAGattt
aaaatgtgaaaatcttttacttGATTTGAATTTCCATGTTGTTGTTTCCG
ACTTTGGATTCGCTCGTGGACAAATGGTCAACCCGGAAACAGGAAAGCGG
AGACTTAGTCAAACCTTTTGTGGATCTTACGCTTATGCACCTCCTGAAAT
TCTAAGAGgtATCGCTTATGATGGTACTATTGCAGATATATGGAGTATTG
GTGTAATCTTATATACCATGGTCAGTGCAAGTCTACCTTTCGATGATTCT
AATCTTAAAACTTTATTGGAACAAGTTATGCGTCCTGTCCATTTTTCAAG
CCGTAAGAAGATTACACCAGAAGCTAAAGATCTTATATGTCGAATGCTTG
AGCCATCGGTTGAGAAACGATTCACTGTTAAAGATATTAAAGAGCACTGT
TGGTTCAAAGGTGAAAAACTACCCGCAGACGCCGAGATCGCAACTGGTGG
TGCCCAACAACCAGCACCTGCCGCAGCAACTTCCTAATTTTTTCCCCTCG
CAATATCAAACAGGCTGGTCCTGTAGATTTTGTAAAATATCCTATCTCCT
ATATTATATtcagaaataaaaat
Run BLAST on NCBI

protein sequence of TCONS_00059890-protein

>TCONS_00059890-protein ID=TCONS_00059890-protein|Name=TCONS_00059890-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MADENQQTSKQHKRKSLLNNFNLRNIFRKPTNNMSQPSSKTTVNGASANS
EPPKDTPATNTQTPKKESTTKPTTATDNATAGATAGQAATSSSSKQDAAQ
AAPKPQPQTAFDSAAALLAQYGYGLGEQLGKGSYAIVRAATSKKHKRRVA
IKIISKKKAPEDYLTKFLPREIQVLKRLRHPNCISLLEAIETNTRIYLIM
NLAENGDLLEYIRERGPMPDEDARKYFRNLITAIEYFHSLGIVHRDLKCE
NLLLDLNFHVVVSDFGFARGQMVNPETGKRRLSQTFCGSYAYAPPEILRG
IAYDGTIADIWSIGVILYTMVSASLPFDDSNLKTLLEQVMRPVHFSSRKK
ITPEAKDLICRMLEPSVEKRFTVKDIKEHCWFKGEKLPADAEIATGGAQQ
PAPAAATS
Run BLAST on NCBI

transcript from alignment at scaffold_331:359013..360796-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059890 ID=TCONS_00059890|Name=TCONS_00059890|organism=Clytia hemisphaerica|type=transcript|length=1784bp|location=Sequence derived from alignment at scaffold_331:359013..360796- (Clytia hemisphaerica)
TGGGCGTTCAGTGTATCGTGCGCATGATGGAAGTTTTTGTCCAAGCAGGA
GTGTACGCGGCACGTGATTAGACAAAAGAAGTTCTCGTTGACGTCAAATA
AAACAATAAAATATTTGACGTCACAAACAACATATTAAAAAAACGTGATG
CCAAAAAATCGATAACACTTTGCACTTACGATATCATGGAAATCATCTCA
TGTCTCTTCAATGGCCGATGAGAACCAACAAACTTCTAAACAACACAAGA
GAAAATCGCTTCTTAATAACTTCAATCTTCGTAATATTTTTCGTAAACCG
ACCAACAATATGTCTCAACCATCCAGCAAAACCACCGTAAACGGAGCTAG
CGCAAACAGTGAACCACCGAAAGATACACCAGCTACCAATACTCAAACAC
CTAAGAAGGAGTCTACTACTAAACCAACAACCGCTACTGACAATGCAACA
GCAGGAGCTACCGCTGGACAAGCAGCAACGTCTAGCAGCTCCAAACAAGA
TGCTGCTCAAGCCGCACCAAAGCCTCAGCCTCAAACGGCATTCGATTCGG
CTGCAGCTTTGCTTGCTCAATACGGTTATGGGTTAGGAGAACAACTTGGC
AAAGGTAGTTACGCTATTGTAAGAGCTGCCACATCTAAAAAACACAAACG
TCGTGTCGCTATCAAAATTATTTCGAAGAAAAAGGCACCCGAGGACTATT
TGACTAAATTTTTACCACGCGAGATACAAGTCTTAAAACGTTTGCGTCAC
CCGAATTGTATTTCCTTATTGGAGGCCATCGAAACCAACACCCGTATCTA
TTTGATCATGAACCTTGCCGAGAACGGTGACCTCTTGGAGTATATACGTG
AACGTGGTCCAATGCCAGATGAAGATGCCCGAAAATACTTTCGAAACTTG
ATTACGGCTATTGAGTATTTCCATTCCCTTGGAATCGTTCACAGAGATTT
AAAATGTGAAAATCTTTTACTTGATTTGAATTTCCATGTTGTTGTTTCCG
ACTTTGGATTCGCTCGTGGACAAATGGTCAACCCGGAAACAGGAAAGCGG
AGACTTAGTCAAACCTTTTGTGGATCTTACGCTTATGCACCTCCTGAAAT
TCTAAGAGGTAATGATTTTGAAATTTATATTATTTATTTGTCTTTACTCC
TTCAATCTTCAATTAAAATCTGTACTAACTTGAAGACTAGCTAGTGTTTC
ACTTGCTATGAGACTTAACTGTTCTTGCATCCCTGTAATACCCAAATGGC
AAAGATATTTCATTGCATATATATTTCAGATGCCTTTAATAGTTGAACGA
ACTCTTGTTAACTCCATAACTTTTTAATCTACTCTTCTACTTACTATAAT
AACTTTATTTTTGTTTTAGGTATCGCTTATGATGGTACTATTGCAGATAT
ATGGAGTATTGGTGTAATCTTATATACCATGGTCAGTGCAAGTCTACCTT
TCGATGATTCTAATCTTAAAACTTTATTGGAACAAGTTATGCGTCCTGTC
CATTTTTCAAGCCGTAAGAAGATTACACCAGAAGCTAAAGATCTTATATG
TCGAATGCTTGAGCCATCGGTTGAGAAACGATTCACTGTTAAAGATATTA
AAGAGCACTGTTGGTTCAAAGGTGAAAAACTACCCGCAGACGCCGAGATC
GCAACTGGTGGTGCCCAACAACCAGCACCTGCCGCAGCAACTTCCTAATT
TTTTCCCCTCGCAATATCAAACAGGCTGGTCCTGTAGATTTTGTAAAATA
TCCTATCTCCTATATTATATTCAGAAATAAAAAT

Coding sequence (CDS) from alignment at scaffold_331:359013..360796-

>TCONS_00059890 ID=TCONS_00059890|Name=TCONS_00059890|organism=Clytia hemisphaerica|type=CDS|length=2454bp|location=Sequence derived from alignment at scaffold_331:359013..360796- (Clytia hemisphaerica)
GTATCGCTTATGATGGTACTATTGCAGATATATGGAGTATTGGTGTAATC
TTATATACCATGGTCAGTGCAAGTCTACCTTTCGATGATTCTAATCTTAA
AACTTTATTGGAACAAGTTATGCGTCCTGTCCATTTTTCAAGCCGTAAGA
AGATTACACCAGAAGCTAAAGATCTTATATGTCGAATGCTTGAGCCATCG
GTTGAGAAACGATTCACTGTTAAAGATATTAAAGAGCACTGTTGGTTCAA
AGGTGAAAAACTACCCGCAGACGCCGAGATCGCAACTGGTGGTGCCCAAC
AACCAGCACCTGCCGCAGCAACTTCCTAAATGGCCGATGAGAACCAACAA
ACTTCTAAACAACACAAGAGAAAATCGCTTCTTAATAACTTCAATCTTCG
TAATATTTTTCGTAAACCGACCAACAATATGTCTCAACCATCCAGCAAAA
CCACCGTAAACGGAGCTAGCGCAAACAGTGAACCACCGAAAGATACACCA
GCTACCAATACTCAAACACCTAAGAAGGAGTCTACTACTAAACCAACAAC
CGCTACTGACAATGCAACAGCAGGAGCTACCGCTGGACAAGCAGCAACGT
CTAGCAGCTCCAAACAAGATGCTGCTCAAGCCGCACCAAAGCCTCAGCCT
CAAACGGCATTCGATTCGGCTGCAGCTTTGCTTGCTCAATACGGTTATGG
GTTAGGAGAACAACTTGGCAAAGGTAGTTACGCTATTGTAAGAGCTGCCA
CATCTAAAAAACACAAACGTCGTGTCGCTATCAAAATTATTTCGAAGAAA
AAGGCACCCGAGGACTATTTGACTAAATTTTTACCACGCGAGATACAAGT
CTTAAAACGTTTGCGTCACCCGAATTGTATTTCCTTATTGGAGGCCATCG
AAACCAACACCCGTATCTATTTGATCATGAACCTTGCCGAGAACGGTGAC
CTCTTGGAGTATATACGTGAACGTGGTCCAATGCCAGATGAAGATGCCCG
AAAATACTTTCGAAACTTGATTACGGCTATTGAGTATTTCCATTCCCTTG
GAATCGTTCACAGAGATTTAAAATGTGAAAATCTTTTACTTGATTTGAAT
TTCCATGTTGTTGTTTCCGACTTTGGATTCGCTCGTGGACAAATGGTCAA
CCCGGAAACAGGAAAGCGGAGACTTAGTCAAACCTTTTGTGGATCTTACG
CTTATGCACCTCCTGAAATTCTAAGAGGTATCGCTTATGATGGTACTATT
GCAGATATATGGAGTATTGGTGTAATCTTATATACCATGGTCAGTGCAAG
TCTACCTTTCGATGATTCTAATCTTAAAACTTTATTGGAACAAGTTATGC
GTCCTGTCCATTTTTCAAGCCGTAAGAAGATTACACCAGAAGCTAAAGAT
CTTATATGTCGAATGCTTGAGCCATCGGTTGAGAAACGATTCACTGTTAA
AGATATTAAAGAGCACTGTTGGTTCAAAGGTGAAAAACTACCCGCAGACG
CCGAGATCGCAACTGGTGGTGCCCAACAACCAGCACCTGCCGCAGCAACT
TCCTAAATGGCCGATGAGAACCAACAAACTTCTAAACAACACAAGAGAAA
ATCGCTTCTTAATAACTTCAATCTTCGTAATATTTTTCGTAAACCGACCA
ACAATATGTCTCAACCATCCAGCAAAACCACCGTAAACGGAGCTAGCGCA
AACAGTGAACCACCGAAAGATACACCAGCTACCAATACTCAAACACCTAA
GAAGGAGTCTACTACTAAACCAACAACCGCTACTGACAATGCAACAGCAG
GAGCTACCGCTGGACAAGCAGCAACGTCTAGCAGCTCCAAACAAGATGCT
GCTCAAGCCGCACCAAAGCCTCAGCCTCAAACGGCATTCGATTCGGCTGC
AGCTTTGCTTGCTCAATACGGTTATGGGTTAGGAGAACAACTTGGCAAAG
GTAGTTACGCTATTGTAAGAGCTGCCACATCTAAAAAACACAAACGTCGT
GTCGCTATCAAAATTATTTCGAAGAAAAAGGCACCCGAGGACTATTTGAC
TAAATTTTTACCACGCGAGATACAAGTCTTAAAACGTTTGCGTCACCCGA
ATTGTATTTCCTTATTGGAGGCCATCGAAACCAACACCCGTATCTATTTG
ATCATGAACCTTGCCGAGAACGGTGACCTCTTGGAGTATATACGTGAACG
TGGTCCAATGCCAGATGAAGATGCCCGAAAATACTTTCGAAACTTGATTA
CGGCTATTGAGTATTTCCATTCCCTTGGAATCGTTCACAGAGATTTAAAA
TGTGAAAATCTTTTACTTGATTTGAATTTCCATGTTGTTGTTTCCGACTT
TGGATTCGCTCGTGGACAAATGGTCAACCCGGAAACAGGAAAGCGGAGAC
TTAGTCAAACCTTTTGTGGATCTTACGCTTATGCACCTCCTGAAATTCTA
AGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037661XLOC_037661Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059890-proteinTCONS_00059890-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059890-exon-scaffold_331-1575043694:359689..360796TCONS_00059890-exon-scaffold_331-1575043694:359689..360796Clytia hemisphaericaexon
TCONS_00059890-exon-scaffold_331-1575043694:359013..359427TCONS_00059890-exon-scaffold_331-1575043694:359013..359427Clytia hemisphaericaexon
TCONS_00059890-exon-scaffold_331-1510915933:359689..360796TCONS_00059890-exon-scaffold_331-1510915933:359689..360796Clytia hemisphaericaexon
TCONS_00059890-exon-scaffold_331-1510915933:359013..359427TCONS_00059890-exon-scaffold_331-1510915933:359013..359427Clytia hemisphaericaexon
TCONS_00059890-exon-scaffold_331-1491911889:359689..360796TCONS_00059890-exon-scaffold_331-1491911889:359689..360796Clytia hemisphaericaexon
TCONS_00059890-exon-scaffold_331-1491911889:359013..359427TCONS_00059890-exon-scaffold_331-1491911889:359013..359427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:359013..360796 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161999	0.157974	0.0611411	0.0897256	0.254875	0.0287723	0.0347125	0.0324974	0.0227522	0	0	0.0179817	0	0.0559447	0	0	0	0	0	0	0	0.0381992	0	0	3.56558	4.86385	0	0	0	0.0305323
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00059890 vs. Swiss-Prot (Human)
Match: TSSK1 (Testis-specific serine/threonine-protein kinase 1 OS=Homo sapiens GN=TSSK1B PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.404e-80
Identity = 128/255 (50.20%), Postives = 178/255 (69.80%), Query Frame = 1 
Query:  601 KGSYAIVRAATSKKHKRRVAIKIISKKKAPEDYLTKFLPREIQVLKRLRHPNCISLLEAIET-NTRIYLIMNLAENGDLLEYIRERGPMPDEDARKYFRNLITAIEYFHSLGIVHRDLKCENLLLDLNFHVVVSDFGFARGQMVNPETGKRRLSQTFCGSYAYAPPEILRGIAYDGTIADIWSIGVILYTMVSASLPFDDSNLKTLLE-QVMRPVHFSSRKKITPEAKDLICRMLEPSVEKRFTVKDIKEHCWFK 1359
            +GSYA V++A S++ K  VAIKII +KKAP D+L KFLPREI++L  L H + I   E  ET + ++Y++M LA  GDLLE I+ RG + +++ARK F  L  AI+Y H L +VHRDLKC+NLLLD +F++ +SDF F++ + +  ++G+  LS+TFCGS AYA PE+L+GI Y   + DIWS+GVILY MV  S+P+DDSN+K +L  Q    V+F   K +T E KDLI  ML+P V +R  + +I  HCW +
Sbjct:   20 EGSYAKVKSAYSERLKFNVAIKIIDRKKAPADFLEKFLPREIEILAMLNHCSIIKTYEIFETSHGKVYIVMELAVQGDLLELIKTRGALHEDEARKKFHQLSLAIKYCHDLDVVHRDLKCDNLLLDKDFNIKLSDFSFSK-RCLRDDSGRMALSKTFCGSPAYAAPEVLQGIPYQPKVYDIWSLGVILYIMVCGSMPYDDSNIKKMLRIQKEHRVNFPRSKHLTGECKDLIYHMLQPDVNRRLHIDEILSHCWMQ 273
The following BLAST results are available for this feature:
BLAST of TCONS_00059890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSSK12.404e-8050.20Testis-specific serine/threonine-protein kinase 1 ... [more]
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