|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059847 ID=TCONS_00059847|Name=TCONS_00059847|organism=Clytia hemisphaerica|type=transcript|length=1411bp
ATAATGATCTTACTGTACAAAACATTGTGAAGCTTTACTGTAATGTAAAA
TGCCTCGTACACTTTAAACTTCCCCTATTGAATCGCATACCGAAATCGAC
CATTATCCTTTGTTAAATTATTGTAATGAACAATTAGAACTGATTAACCA
TGTCATTACTGTACACTATCAATCTGATAGAAGcctgatagttgaaagat
tgcAAGCTCTATTGTAATAaggaaaaaatttcatgtttttctaAAAGTGC
CCAACTATCAACCAGTGTCAACCGTCAAGGTAGAAGTGTAAAATTCCCTT
TGATTCTAGAAGTGTATTTAAGCCACAAAGGAAAAATGGCGACTCAAAAG
TCATTTAGGGAAGATATATTCAGACATGAACAAGAACAAGATGAAGTTAT
TCTTATTGGTCTCCTTAACTTTATTCGCAGTACATAcACGAACATGCAAC
GGTGGTCTAGCAAAGAAACTACGCACTTTGGCGCTTGAATATCAATCAGG
CAAAACATTGGCTTATGAAGCACTGGAAAAGCTGGAGACGGACGTggaaa
ttaagcaaaaatatttcccgAAAGACTTCAGTGCGTGGAAAGTAACTCAT
CAGCAttatttttggatgaaatttgtcaagaaaGCTTTGGAAATCTTTCA
AAGCAAGCTAGCAGGTGGCTTCAATCCCTCCTTTCGAAACGAAACACGGG
GGTTGTTCTATGTGATGCTTCGAAATCAAATCGGCAACGTCACAAAGATG
GCAGAGGTCTATCGGCGGAAACGCACTCTATCGTTctccaaaaagtttga
aaagagcATGAATAGGAATCTGaatgactttaaaatttcattcaaaaaag
aCTTGCTTCAAAAGTATCTAAACGTTGGTACAAGCGACGAAACGAGGTAT
CGTATTTTACTGCAAGAGTTGGTCACGTTTTTCAATGTCTTTATTTCACA
TAACAAGAAAGGAATCAAACGTCTCAAAAGATTTGGTTGAGTAAATTTTG
GAATTAATGTTACTATACGAGGAAAATCAAGTACTCTTGGGCTTCAAGAC
AATCTTTCAATTGAGTGCATGGGGTCCATGAtcagctatctatgaactga
acggattATTGGAACGGCCAATCCttggtttgagacgctgacaGTTTaat
cacagatctgtaaagcccgaagggctagatccacggcctttatcgaaaag
tggagcaagttttggtaggattttctaccaaagaaatcacgtgacaacaa
gcaatttcactggtttgagaaatgcgaaatagcgtttgccgccgaATCTA
ATTAAAATGCTACATCCTATCCATCGGCcctaaatttaaaaagtcaaatt
tttgattcacttttttttgctggagaaagcttattTGAATTAAATCGTTG
TCATATTTATA Run BLAST on NCBI protein sequence of TCONS_00059847-protein >TCONS_00059847-protein ID=TCONS_00059847-protein|Name=TCONS_00059847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MNKNKMKLFLLVSLTLFAVHTRTCNGGLAKKLRTLALEYQSGKTLAYEAL
EKLETDVEIKQKYFPKDFSAWKVTHQHYFWMKFVKKALEIFQSKLAGGFN
PSFRNETRGLFYVMLRNQIGNVTKMAEVYRRKRTLSFSKKFEKSMNRNLN
DFKISFKKDLLQKYLNVGTSDETRYRILLQELVTFFNVFISHNKKGIKRL
KRFG Run BLAST on NCBI transcript from alignment at scaffold_331:917740..920536+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059847 ID=TCONS_00059847|Name=TCONS_00059847|organism=Clytia hemisphaerica|type=transcript|length=2797bp|location=Sequence derived from alignment at scaffold_331:917740..920536+ (Clytia hemisphaerica)
ATAATGATCTTACTGTACAAAACATTGTGAAGCTTTACTGTAATGTAAAA
TGCCTCGTACACTTTAAACTTCCCCTATTGAATCGCATACCGAAATCGAC
CATTATCCTTTGTTAAATTATTGTAATGAACAATTAGAACTGATTAACCA
TGTCATTACTGTACACTATCAATCTGATAGAAGcctgatagttgaaagat
tgcAAGCTCTATTGTAATAaggaaaaaatttcatgtttttctaAAAGTGC
CCAACTATCAACCAGTGTCAACCGTCAAGGTAGAAGTGTAAAATTCCCTT
TGATTCTAGAAGTGTATTTAAGCCACAAAGGAAAAATGGCGACTCAAAAG
TCATTTAGGGAAGATATATTCAGACATGAACAAGAACAAGATGAAGTTAT
TCTTATTGGTCTCCTTAACTTTATTCGCAGTACATAGTAGGTTACTTTTT
GTTGAAATAAACATAGTGAATTCCACTGAATATTCGAACCACACTTTAGC
CAAGCATTATTTTGATACGTTTTGTTATGGCTGATTACTCTAGCTCACTC
TCTAGTTCGATCTTCGGTTATTAGTCACAATTCAAGTCTGTAAAACTTTC
AACTTAAGGGAACTATTTTGCTTTATTTCGAATTTAAAACAAGATGACAA
GATAGTCATTCATAGCCACAATTCCTCCAAAAGACTTCAgcaattttctt
ttctcttttagcACGAACATGCAACGGTGGTCTAGCAAAGAAACTACGCA
CTTTGGCGCTTGAATATCAATCAGGCAAAACATTGGCTTATGAAGCACTG
GAAAAGCTGGTAAGTGCATTAATCacaatcaatcaatttttgaatgcACC
TTcttgaccgtagtcgcgcggccAGGTGCGTGCCACTTTATAATCTAATT
ATCCCCCTGAGCTCGATCCAATCCTcttttacacctttttttattgtCTA
TAAGTGCGAAAAATGCTTAATCTTAATATGAAGTGCTCTACATCTTCAAA
TCTTTGGATATTGAAACCCGTAAAAAAGGAGATGGCGGTGGTGATGAAAC
GCAGGAGATGACAGTGATATATTGCCCCTCATATATACGAGATAAGATTA
TGTATTGGAGGCTGCCCAAACTGTAGTACCAtatatttataaagcccgaa
gggctacaTGACGTGCTTTTGCTGAACTGCGTACTTTTCtcgggtttttg
aaaacaatattttttccgatattcacttttttttgcctgcaatGGCTTag
agcacgacatctagcccttcgggctttacaaatcAATGGTAGTACCCTAC
AGTAACCACTGATAAATTTGATTAATGGTTGAGTGTACTAGTCTgagaac
tttctaaaaatatttattttcatcttctttcTATAGGAGACGGACGTgga
aattaagcaaaaatatttcccgAAAGACTTCAGTGCGTGGAAAGTAACTC
ATCAGCAttatttttggatgaaatttgtcaagaaaGCTTTGGAAATCTTT
CAAAGCAAGCTAGCAGGTGGCTTCAATCCCTCCTTTCGAAACGAAACACG
GGGGTTGTTCTATGTGATGCTTCGAAATCAAATCGGCAACGTCACAAAGA
TGGCAGAGGTATGTTAACTCCCACAACACCTTTTTATGTTCATTTTTATG
AGCCAAATGATTAAAACAACGAGTTGagttttttcgcaaaaaaatgaTGC
ATGATAAAAAGGATTTTGAAAGCAACGTAGGACTTCCTCTTTTGGATGGC
TTTTTTATCGGAAGTAAATATGATAATTTAAAATCCGCCGTCAATAGCTA
TGTCTAAAATAACCAAAACCAGAACGGGTAAATTAAGCCCAATTCAAGGA
CTTGTAATTTCAAGTGTAAAATAGATATAATGGTTTGTAATTAAGCGATA
AATCAACGAAGCTGAAAGTTAACGCATGAATATTTTTGGcccaataaaaa
ataaaaatattcattttcatATCATTCTTGATCTTTTCAAAAGAAGCTTT
AGAACTGTCCACTCATAATTACCTTTTTTCAACGAGGCATTTCTTATCTA
TAATGTAAAACTGTAAATATGTATTTACAACGAGTATTTAGAGAATAAAA
ATAAGTTATATCTTCAAGTTTTAATACCATTATTTTTTGCAGGTCTATCG
GCGGAAACGCACTCTATCGTTctccaaaaagtttgaaaagagcATGAATA
GGAATCTGaatgactttaaaatttcattcaaaaaagaCTTGCTTCAAAAG
TATCTAAACGTTGGTACAAGCGACGAAACGAGGTATCGTATTTTACTGCA
AGAGTTGGTCACGTTTTTCAATGTCTTTATTTCACATAACAAGAAAGGAA
TCAAACGTCTCAAAAGATTTGGTTGAGTAAATTTTGGAATTAATGTTACT
ATACGAGGAAAATCAAGTACTCTTGGGCTTCAAGACAATCTTTCAATTGA
GTGCATGGGGTCCATGAtcagctatctatgaactgaacggattATTGGAA
CGGCCAATCCttggtttgagacgctgacaGTTTaatcacagatctgtaaa
gcccgaagggctagatccacggcctttatcgaaaagtggagcaagttttg
gtaggattttctaccaaagaaatcacgtgacaacaagcaatttcactggt
ttgagaaatgcgaaatagcgtttgccgccgaATCTAATTAAAATGCTACA
TCCTATCCATCGGCcctaaatttaaaaagtcaaatttttgattcactttt
ttttgctggagaaagcttattTGAATTAAATCGTTGTCATATTTATA Coding sequence (CDS) from alignment at scaffold_331:917740..920536+ >TCONS_00059847 ID=TCONS_00059847|Name=TCONS_00059847|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_331:917740..920536+ (Clytia hemisphaerica)
ATGAACAAGAACAAGATGAAGTTATTCTTATTGGTCTCCTTAACTTTATT
CGCAGTACATAcACGAACATGCAACGGTGGTCTAGCAAAGAAACTACGCA
CTTTGGCGCTTGAATATCAATCAGGCAAAACATTGGCTTATGAAGCACTG
GAAAAGCTGGAGACGGACGTggaaattaagcaaaaatatttcccgAAAGA
CTTCAGTGCGTGGAAAGTAACTCATCAGCAttatttttggatgaaatttg
tcaagaaaGCTTTGGAAATCTTTCAAAGCAAGCTAGCAGGTGGCTTCAAT
CCCTCCTTTCGAAACGAAACACGGGGGTTGTTCTATGTGATGCTTCGAAA
TCAAATCGGCAACGTCACAAAGATGGCAGAGGTCTATCGGCGGAAACGCA
CTCTATCGTTctccaaaaagtttgaaaagagcATGAATAGGAATCTGaat
gactttaaaatttcattcaaaaaagaCTTGCTTCAAAAGTATCTAAACGT
TGGTACAAGCGACGAAACGAGGTATCGTATTTTACTGCAAGAGTTGGTCA
CGTTTTTCAATGTCTTTATTTCACATAACAAGAAAGGAATCAAACGTCTC
AAAAGATTTGGTTGAATGAACAAGAACAAGATGAAGTTATTCTTATTGGT
CTCCTTAACTTTATTCGCAGTACATAcACGAACATGCAACGGTGGTCTAG
CAAAGAAACTACGCACTTTGGCGCTTGAATATCAATCAGGCAAAACATTG
GCTTATGAAGCACTGGAAAAGCTGGAGACGGACGTggaaattaagcaaaa
atatttcccgAAAGACTTCAGTGCGTGGAAAGTAACTCATCAGCAttatt
tttggatgaaatttgtcaagaaaGCTTTGGAAATCTTTCAAAGCAAGCTA
GCAGGTGGCTTCAATCCCTCCTTTCGAAACGAAACACGGGGGTTGTTCTA
TGTGATGCTTCGAAATCAAATCGGCAACGTCACAAAGATGGCAGAGGTCT
ATCGGCGGAAACGCACTCTATCGTTctccaaaaagtttgaaaagagcATG
AATAGGAATCTGaatgactttaaaatttcattcaaaaaagaCTTGCTTCA
AAAGTATCTAAACGTTGGTACAAGCGACGAAACGAGGTATCGTATTTTAC
TGCAAGAGTTGGTCACGTTTTTCAATGTCTTTATTTCACATAACAAGAAA
GGAATCAAACGTCTCAAAAGATTTGGTTGAATGAACAAGAACAAGATGAA
GTTATTCTTATTGGTCTCCTTAACTTTATTCGCAGTACATAcACGAACAT
GCAACGGTGGTCTAGCAAAGAAACTACGCACTTTGGCGCTTGAATATCAA
TCAGGCAAAACATTGGCTTATGAAGCACTGGAAAAGCTGGAGACGGACGT
ggaaattaagcaaaaatatttcccgAAAGACTTCAGTGCGTGGAAAGTAA
CTCATCAGCAttatttttggatgaaatttgtcaagaaaGCTTTGGAAATC
TTTCAAAGCAAGCTAGCAGGTGGCTTCAATCCCTCCTTTCGAAACGAAAC
ACGGGGGTTGTTCTATGTGATGCTTCGAAATCAAATCGGCAACGTCACAA
AGATGGCAGAGGTCTATCGGCGGAAACGCACTCTATCGTTctccaaaaag
tttgaaaagagcATGAATAGGAATCTGaatgactttaaaatttcattcaa
aaaagaCTTGCTTCAAAAGTATCTAAACGTTGGTACAAGCGACGAAACGA
GGTATCGTATTTTACTGCAAGAGTTGGTCACGTTTTTCAATGTCTTTATT
TCACATAACAAGAAAGGAATCAAACGTCTCAAAAGATTTGGTTGAATGAA
CAAGAACAAGATGAAGTTATTCTTATTGGTCTCCTTAACTTTATTCGCAG
TACATAcACGAACATGCAACGGTGGTCTAGCAAAGAAACTACGCACTTTG
GCGCTTGAATATCAATCAGGCAAAACATTGGCTTATGAAGCACTGGAAAA
GCTGGAGACGGACGTggaaattaagcaaaaatatttcccgAAAGACTTCA
GTGCGTGGAAAGTAACTCATCAGCAttatttttggatgaaatttgtcaag
aaaGCTTTGGAAATCTTTCAAAGCAAGCTAGCAGGTGGCTTCAATCCCTC
CTTTCGAAACGAAACACGGGGGTTGTTCTATGTGATGCTTCGAAATCAAA
TCGGCAACGTCACAAAGATGGCAGAGGTCTATCGGCGGAAACGCACTCTA
TCGTTctccaaaaagtttgaaaagagcATGAATAGGAATCTGaatgactt
taaaatttcattcaaaaaagaCTTGCTTCAAAAGTATCTAAACGTTGGTA
CAAGCGACGAAACGAGGTATCGTATTTTACTGCAAGAGTTGGTCACGTTT
TTCAATGTCTTTATTTCACATAACAAGAAAGGAATCAAACGTCTCAAAAG
ATTTGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059847-exon-scaffold_331-1491911889:917740..918175 | TCONS_00059847-exon-scaffold_331-1491911889:917740..918175 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1510915933:917740..918175 | TCONS_00059847-exon-scaffold_331-1510915933:917740..918175 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1575043694:917740..918175 | TCONS_00059847-exon-scaffold_331-1575043694:917740..918175 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1491911889:918451..918548 | TCONS_00059847-exon-scaffold_331-1491911889:918451..918548 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1510915933:918451..918548 | TCONS_00059847-exon-scaffold_331-1510915933:918451..918548 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1575043694:918451..918548 | TCONS_00059847-exon-scaffold_331-1575043694:918451..918548 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1491911889:919126..919347 | TCONS_00059847-exon-scaffold_331-1491911889:919126..919347 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1510915933:919126..919347 | TCONS_00059847-exon-scaffold_331-1510915933:919126..919347 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1575043694:919126..919347 | TCONS_00059847-exon-scaffold_331-1575043694:919126..919347 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1491911889:919882..920536 | TCONS_00059847-exon-scaffold_331-1491911889:919882..920536 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1510915933:919882..920536 | TCONS_00059847-exon-scaffold_331-1510915933:919882..920536 | Clytia hemisphaerica | exon |
| TCONS_00059847-exon-scaffold_331-1575043694:919882..920536 | TCONS_00059847-exon-scaffold_331-1575043694:919882..920536 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:917740..920536 + |
Blast
The following BLAST results are available for this feature:
|
