|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059840 ID=TCONS_00059840|Name=TCONS_00059840|organism=Clytia hemisphaerica|type=transcript|length=1403bp
agaagaagaagatgatgaAGATGACGTTGACGGGATCCCGTTGACGAAGG
ATGTTTCGGAAATTGATGGCCTTCCTCTTGTCAAACAAGAAGATGATATT
GATGGTGTCCCAATCAAAGGTACATAGTGTTGATCGAGTATTCGAAAAAG
AGGAGTGCTCCCAGTCTTGAGGGCTACGTACACTACACAATGTTGTCAGC
CAATGTACCGTGTAGTCTAACTAGCCCTTTGATGACTGACTCTGACAAGA
ATTCAGTTAGTCTGGGGGTGGTCTTGGTTTACCCTTACAAGTACCATAAA
AGAATAAAGACCCGTACATACTACTTTATAAAGGTTGAAAAAAGACCATT
TCACTGCCAGACTAAATAAAGTTCAGAGTGCTTCCGCCTCAAGCTTTTCT
CCCGTTCAGCGAGGAGTTATAAGAATTCTtgaaagatgtattttgtttaG
GCAAATCAGAAGACCCTGTCGCTCTCTCACGTTGGGAGCGTATAGAGGAT
AGTACAGAAGATGAGCAAAcgaaagaaaataaaagcaaaTGGGAAAAAGT
GGAGGGTGTCAAGATGGGGAAGAGCGTCAAAGAAGAAGAGATGGACAGTG
AGGAAGAGCCACCACGGAGGAGGGATAGAAGTCCTACACGCGATAAGAGT
GACAGGCGTTCGCGCGACAACTCGCCAGACGAAGAAGACAGGCAACGTTT
GAGGGATGTTGAATTGAAAGTCGTGCGGTTTATCGACAAGCTAGAACAAC
GTGGTGGGAACAAGAGCGGTCTCAACATTCAGAAAGAAGCAGCCAAGTTT
AGAGAACAATTACTTCAACAATATGAAAATGCACGAGAGAAGAAACGGAA
GAGCAACAAATCATCGGATCGCAAACGAGAGCGTAGCCCGTCACCGGTAC
CTGATAGTAAACGAAAGAAAAGTTCCAAAAGGAGAAGCTCCTTATCGCCG
TCTCCTcCACGTTCACGAAGACGCGGAAGATCACGTTCTCGTTCCCGTTC
ATTTTCGCCCAATCGCAACCGCTCATATTCCCGATCACCTGATCGGTTCA
AGGATTCACCGATATTCAAAACCGATCGATCACGTAGTCGCCGATCATAT
TCTCGCAGCCCTGATTCTCGTTCTCGTTCACCACCAATGCGTCGAAGTCG
TTCACCGAGAAGGAGTCGGACGCCCCCGAGAAGAAGTCGTTCACCATCGT
ATTCACCGAGACGAAACTCGTCGAGCTCtaagaaaaagagcaaaaaaagt
aaacgaTGATTTTTGAGCGGGCCTAACCATCTTTTTGTACATAGACTTTT
TTGGAACGtaaattttttaagaataataAATTTAATGAATCATTCATTGA
TTATCACGGAATAATCGAATTCATAATAACTCTTAATTCCAGCCTCGTTC
CAG Run BLAST on NCBI transcript from alignment at scaffold_331:858690..863094+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059840 ID=TCONS_00059840|Name=TCONS_00059840|organism=Clytia hemisphaerica|type=transcript|length=4405bp|location=Sequence derived from alignment at scaffold_331:858690..863094+ (Clytia hemisphaerica)
agaagaagaagatgatgaAGATGACGTTGACGGGATCCCGTTGACGAAGG
ATGTTTCGGAAATTGATGGCCTTCCTCTTGTCAAACAAGAAGATGATATT
GATGGTGTCCCAATCAAAGGTACATAGTGTTGATCGAGTATTCGAAAAAG
AGGAGTGCTCCCAGTCTTGAGGGCTACGTACACTACACAATGTTGTCAGC
CAATGTACCGTGTAGTCTAACTAGCCCTTTGATGACTGACTCTGACAAGA
ATTCAGTTAGTCTGGGGGTGGTCTTGGTTTACCCTTACAAGTACCATAAA
AGAATAAAGACCCGTACATACTACTTTATAAAGGTTGAAAAAAGACCATT
TCACTGCCAGACTAAATAAAGTTCAGAGTGCTTCCGCCTCAAGCTTTTCT
CCCGTTCAGCGAGGAGTTATAAGAATTCTtgaaagatgtattttgtttaG
GCAAATCAGAAGACCCTGTCGCTCTCTCACGTTGGGAGCGTATAGAGGAT
AGTACAGAAGATGAGCAAAcgaaagaaaataaaagcaaaTGGGAAAAAGT
GGAGGGTGTCAAGATGGGGAAGAGCGTCAAAGAAGAAGAGATGGACAGTG
AGGAAGAGCCACCACGGAGGAGGGATAGAAGGTATGGaacactttgaaaa
ttttaaggacAAGCGTAGGGCATATTTTGTGTTGCCACTTGGGTTATCTT
GCTTGTTTCATGGCTCTAATCAATAACGCTACATTAAATCAGAAACCGAG
TAAAAAACCTCATTGAATGGGAAattaaaaacaaagcaaaccaGACACTG
AAAcccattttcttattttatcttttatcgGGATTGAAGATTGTATAATG
TATATTTTCATCGCTTATAGTCCTACACGCGATAAGAGTGACAGGCGTTC
GCGCGACAACTCGCCAGACGAAGAAGACAGGCAACGTTTGAGGGATGTTG
AATTGAAAGTCGTGCGGTTTATCGACAAGCTAGAACAACGTGGTGGGAAC
AAGAGCGGTCTCAACATTCAGAAAGAAGCAGCCAAGTTTAGAGAACAATT
ACTTCAAGTAAGAAATGAGAAGCGAAATTGTTCTAATTAACTAGCTTTTT
CATCTAGAAGAAATCTCAGAATCTCAAAATCTCCCTGCCGGACACTTTCG
TAAAGTGCATTGGGAATTCGAGAAGCTCCTAATggaatgtttatattttt
attatgaCGTATTCAATATGGTGtgaattgtttttataaatttctaaCTT
GTCAAGTAATAAAATAATATTCTCGACTACCTGAAGGAAAATTtcgcggg
aagaaattttcgcggaatttactttcgcggttcacagctcaaaatttggA
GGTTTCGCGGAGTTTAATTTCGCAGTTTGGATTTTGATTACAATATGgct
tattttgccctaaaaagactgattttagagGTGATTTTCCAAATCtgaga
atatttgtgttttgcggaatttaatttcgctgATCCgtcaaaaaaccgcg
aaaatttgttcagcgaaaatttcttcccttgagGTAGTTTATTTTCGATG
TAGGATTTATTGGAAATAtgttttaactttatttttgcTTCTTCTCTCTT
CAGCAATATGAAAATGCACGAGAGAAGAAACGGAAGAGCAACAAATCATC
GGATCGCAAACGAGAGCGTAGCCCGTCACCGGTACCTGATAGTAAACGAA
AGAAAAGTTCCAAAAGGAGAAGCTCCTTATCGCCGTCTCCTGTAAGAAGT
TTTTATTATAAtctgaaatatcaaatttatagGACTAAAAGATTAAATAT
CATTAGAACATTAATTggaaaatattcacaaaaatatATATGACAAGTAC
TTCTTTATATTATGCACTAAACTGGTACTAAACTAAGTAAAATTCCACTT
CGGAAGTCTTCTCGGTGTATTTAAGGGCGAACACACatgtttgaaaaaga
ctttttatATAGATTTTTAAATCGTAAATAAAATTATTCTAATATTCGAT
CTTGACAAAACAAAGTACATATTTGAAGTCTCCATTAAATTTCGCGTTTT
TTGATGTATATATGATCAAGGTAATTATTAAAACATAATTACTAATTTGT
GGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNATCGgactaaaatttcatttttcta
ctGACGTAAGCCTTTATAGAATAACAATTCCATTGTTTGGAGCCGATAAA
ACCTTTGCGAAttgttaaaattcttattttactTTACACtactttttgtt
gaaagcgaaATTTTCCGAGAGACTTTGATATTATCCATGCAATAACGATT
TAAAGGTAATTTGGTAGCATTTTGTTGCTGATAAGATTTTACAGACCAAC
CTTCCAGATCTCTTTTTGACGTAACGAGCAAACAATATTTTCAATAGATA
ATAGAACTATAGAGTTAAATGGAACCTATAGGATATAAAAGACCTATTTA
ATTAAATTAAGTAGCAAATGTTCAATAGATATAATGAACCTTTAGTAGAT
AGATAATGAATTTCCTTTGATAAATGGCTTTTAAAAACAGTATTGTTCAA
GGGGTGTTCAAGATTAAAGTGCGCCCAAAactgggagtttctaaacatcg
accagaaatggcgaccacgaccagcgaccacgaccggcgaccaggtaaag
ttgggttatcgagtttttcctctttctccaccgtagagtctttctcttat
gatcatttttttattgaattgaggagtaaagctcacccctgtctcaccta
cagtgattataaagccacgtgcaagcagccatttcaacgctcttggagct
tgaatagagtgtcaatttatatccttttgtatttttggcATCAAATTAAT
AAGTGACAAAATTTGTGCTGGAATTTATttaggaagctttatatttgatc
atcagatcattattttgtcaaaattagtcattttgacaatgtaaggacaa
tagaataattaatgagattgaaatctctaaaactggtcttcccagctttt
tcctactgacaatttctacctattcatactaaaggcatctcattcggtac
aattaaaatatttggtgtaataaagtttacaggcatcacTCTTAATTGca
ctgtcaatatttttgtcaaaaagtgtcactttgtctagaaaatgactggt
aacgtcaaaagtcacttttagtattctctagttagagtaattctcagcca
cgtgctcagtggttcatttgaaagccacatcaggactcgatttggatgtt
ctctacggtggcgagagcaggtaaactcgataacccaaatttatctggtc
gtcggtcgtggtcgctggtcgtggtcgccatttctggtcgatgtttagaa
actccccccAAAACTGTTCATAAATGAAAACTCTTATTTATGTCTTATTG
ATTTATATTGTATAATAACCTCTTTATTTCGAAAACCTATACGAAAAAGC
CAAGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCATTGATTTGGTT
CTCGTTGTCATAGATACACCCGAATCGAAATTTTAgccagaaagagagaa
aaactcAAAGAATCAGCCCTTAGATACACCGAGTTTGCATTAGATACTTA
GATCCCTTAAGCTCTATGGTAGTCACTAGCTAAGCTTTCACTTTACACCT
TTACACCTTTACACACACTCACGATGTTCATcctcattttcttttctttt
catttcagcCACGTTCACGAAGACGCGGAAGATCACGTTCTCGTTCCCGT
TCATTTTCGCCCAATCGCAACCGCTCATATTCCCGATCACCTGATCGGTT
CAAGGATTCACCGATATTCAAAACCGATCGATCACGTAGTCGCCGATCAT
ATTCTCGCAGCCCTGATTCTCGTTCTCGTTCACCACCAATGCGTCGAAGT
CGTTCACCGAGAAGGAGTCGGACGCCCCCGAGAAGAAGTCGTTCACCATC
GTATTCACCGAGACGAAACTCGTCGAGCTCtaagaaaaagagcaaaaaaa
gtaaacgaTGATTTTTGAGCGGGCCTAACCATCTTTTTGTACATAGACTT
TTTTGGAACGtaaattttttaagaataataAATTTAATGAATCATTCATT
GATTATCACGGAATAATCGAATTCATAATAACTCTTAATTCCAGCCTCGT
TCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059840-exon-scaffold_331-1491911889:858690..859320 | TCONS_00059840-exon-scaffold_331-1491911889:858690..859320 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1510915933:858690..859320 | TCONS_00059840-exon-scaffold_331-1510915933:858690..859320 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1575043694:858690..859320 | TCONS_00059840-exon-scaffold_331-1575043694:858690..859320 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1491911889:859560..859746 | TCONS_00059840-exon-scaffold_331-1491911889:859560..859746 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1510915933:859560..859746 | TCONS_00059840-exon-scaffold_331-1510915933:859560..859746 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1575043694:859560..859746 | TCONS_00059840-exon-scaffold_331-1575043694:859560..859746 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1491911889:860293..860430 | TCONS_00059840-exon-scaffold_331-1491911889:860293..860430 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1510915933:860293..860430 | TCONS_00059840-exon-scaffold_331-1510915933:860293..860430 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1575043694:860293..860430 | TCONS_00059840-exon-scaffold_331-1575043694:860293..860430 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1491911889:862648..863094 | TCONS_00059840-exon-scaffold_331-1491911889:862648..863094 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1510915933:862648..863094 | TCONS_00059840-exon-scaffold_331-1510915933:862648..863094 | Clytia hemisphaerica | exon |
| TCONS_00059840-exon-scaffold_331-1575043694:862648..863094 | TCONS_00059840-exon-scaffold_331-1575043694:862648..863094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:858690..863094 + |
Blast
The following BLAST results are available for this feature:
|
