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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059837 ID=TCONS_00059837|Name=TCONS_00059837|organism=Clytia hemisphaerica|type=transcript|length=3069bpRun BLAST on NCBI protein sequence of TCONS_00059837-protein >TCONS_00059837-protein ID=TCONS_00059837-protein|Name=TCONS_00059837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=970bp MSSKPNKFVKGHNALKPKIAKPLTKSKELQKKKAEEAETAAVLNEYLADFRun BLAST on NCBI transcript from alignment at scaffold_331:844913..863094+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059837 ID=TCONS_00059837|Name=TCONS_00059837|organism=Clytia hemisphaerica|type=transcript|length=18182bp|location=Sequence derived from alignment at scaffold_331:844913..863094+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:844913..863094+ >TCONS_00059837 ID=TCONS_00059837|Name=TCONS_00059837|organism=Clytia hemisphaerica|type=CDS|length=66999bp|location=Sequence derived from alignment at scaffold_331:844913..863094+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059837 vs. Swiss-Prot (Human)
Match: SR140 (U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens GN=U2SURP PE=1 SV=2) HSP 1 Score: 515.383 bits (1326), Expect = 1.363e-164 Identity = 328/731 (44.87%), Postives = 442/731 (60.47%), Query Frame = 1
Query: 136 VLNEYLADFQTGAAGGK--TFVRSGTVNPGKGEVPTMDS-GKVYKPKSKMQQLAEEFRKSKEITNEY--------XXXXXXXXXXXXXXXSNLELFKEELQQSQKERDIRRKLRTGDLSGISEEVLNSL-------PPAFFNDKAGE-DEFSYQYGEGGSRDTGDPSTTNLFVSNINPLLNEEQMCKIFGRYGPLASVKIMWPRTDEEKSRNRNCGFVAFMTRKDGERALDDLEGKYVMDFEMKLGWGKNVPIPPQPIYVHPSQSHIVRPPKQSGLPFNCQ------------LPYKQRKESLPFDGNLEITVVKVVIPTERNIVSIINRMVEFVVREGPMFEAMIMNREIANPMYRFLFDNKSNEHVYYRWRLFAMLQGDTTHKWNQKCFRMYVGGSIWQPPSSNPYGSQVXXXXXXXXXXXXXXXXXIVHGNVKVNEEPNPESLAAXXXXXXXXXXXXXXXXTDAKQPPKEKKALSDRNRDKLEDFLRTITTDRTKVGELMFWCIDHAXXXXXXXXXXXXSLSILETPIPLKIARLFLVSDILSNSTAKVHNASAYRKVFQIELLEMMENMHKALATCSTKSQTEKFRKQVLACLAAWQDWSLYPPGFLINLQNVFVGISTAQDIKDEEERVNKESLRAKMSAIDGEPLKXXXXXXXXVDGIPL-TKDVSEIDGLPLVKQEDDIDGVPIKG----KSEDP---VALSRWERIEDSTEDEQTKENKSKWE 2211
+ E+LA F+ G+ G K TFVR G VN K E T + GK+YKP S+ A++ + +NE LKK ++KKKSNLELFKEEL+Q Q+ERD R K + G LS +S P+ N +G D+++ GS D GDPSTTNL++ NINP +NEE +C+ FGR+GPLASVKIMWPRTDEE++R RNCGFVAFM R+D ERAL +L GK +M FEMKLGWGK VPIPP PIY+ PS PP SGLPFN Q LP + KE F+ L +VKVVIPTERN++++I+RM+EFVVREGPMFEAMIMNREI NPM+RFLF+N++ HVYYRW+L+++LQGD+ KW + FRM+ GS W+PP NPY +HG ++EE E+ + P +K AL + RDKLE+ LR +T + +G+ M +C+++AE EEIV+CI ESLSIL+TP+P KIARL+LVSD+L NS+AKV NAS YRK F+ +L ++ +++ T Q+E F+++V+ C AW+DW++YP FLI LQN+F+G+ + K+ E+ + +DG PL+ DVDGIP+ + ++DG+P+ +DD+DGVP+ K +P VA S+WE + D +E E SKWE
Sbjct: 116 IYEEFLAAFE-GSDGNKVKTFVRGGVVNAAKEEHETDEKRGKIYKPSSR---FADQKNPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTK-GRLSRFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDYA-----PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKED--FEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPY----------------------LHG---MSEEQETEAFV---------------------EEPSKKGALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELDGAPLE-------DVDGIPIDATPIDDLDGVPIKSLDDDLDGVPLDATEDSKKNEPIFKVAPSKWEAV-DESELEAQAVTTSKWE 780 The following BLAST results are available for this feature:
BLAST of TCONS_00059837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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