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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059799 ID=TCONS_00059799|Name=TCONS_00059799|organism=Clytia hemisphaerica|type=transcript|length=1701bp
gtaactttcAATGACCaacaggattttgagtttgaccaaCAGGATTTCAT
TTttgtcggacatgatgtccaattgactgaaaatatttatttgcagccct
gagTGTATAATATTTTGTAAGCTTAAAAGCATTTGATATACTGATTTGAA
AGAAGGAGggaattgaaaaagaatgtcaAGGAACCAAGCAAAACACACAA
ATAAGTTAAGTATTTCTgcgtaaaaagaaaaatcaagtgagttttttttt
gtcaCTCGCATTTCCACACAATACTATTCTTTTTGGCCTGTAGAGAAATA
ATAacataaagtttttttaaatagtcAACAAAGGTCAAGCTCAATAAGTT
TGTATGTTGAAAATGGCAACACTTCGTAACCTTCAccaatcaataaaatc
aaagatttcAATACAACAATTTAAGCGACAGTTGAGTGTCACTGTGTACT
GTCATCAAGAATTTTTGCGGACTTCTATCAAAGATGATGAGAAGGGAATC
AGGAGAATCACACTAGATGATACAAAGAAAAGGAATGCGCTATCGCTTGC
AATGCTTGATGAATTGAAACAGCATTTACAAGATGTAAATATGAACGAAT
CAGTGAAAGTGGTTGTCCTCTGTCACACTGGATCTGTGTTTTCTGCTGGT
CATGATCTAAAAGAATTGTTAGATGAAACAGGATCAAAGTTCCACTCACA
GATTTTCAATCGATGTACTGAAGTTATGAATCTTGTCCAGGATATTGATG
TACCAGTTATTGCAGAAGTTAGAGGTGTGGCAACTGCTGCAGGATGTCAA
TTGGTTGCCACTTGTGATTTAGCTATTTGTTCTGATACTTCAAAATTTGC
TGTTCCAGGAGTTCTGATTGGTTTATTCTGTTCTACACCTGCTGTTGCTC
TTGCACGCGCAGTGAACAGAAAACAAGCTTTAAAGATGTTGCTCACAGGT
GATCCAATCAATGCAAAGGAAGCATTAGATTGTGGTTTGGTCAACAAAAC
AGTCCCCATTGAAGATGTTGAAAAAACCACACAGGAACTAGCAGAGAGAA
TCACACGACACAGTTCTCGTGTCATCGGTCTTGGCAAAAAGACTTTTTAT
CAGCAAATCAAAGAGAACAGAGATGAAGCCTATTGTATTACAGGTAATGT
AATGGTTGATAATCTTACCTATGAAGATGCACAAGAAGGGATCCGGGCTT
TCTTTGAGAAGCGCCAGCCTGAAtggcaaaataacaaataaCACAACACT
GGAACATGCATAGATACAGCTTTATTAAATTATAATGTAAAATATCCTAA
CTCCTGATTGGCTTTGTAACAACAATGCAAGTAAAAAGTCAGTGCAAATC
TAGATTAATTCACATTATCTGTAATTTTACTGATGGTTTATTTGAAAAAG
GTCTTTATAATTTTGTTATTTAGATAAaactcaaattgttcttaaaattt
atttttgatgggTATTAATTACATTTGGATCCTCTGGAAGATGATTGGAA
agttggaaaatatattttccctCTCACATCTAAGACTAAGTAAAGAAGGT
TATcgataataaataaatttaaaaggCTTTGTGAGAAAAATCCTAACGGT
TCATCTCcgatatattttattgtttgtaGAACTTTTTTACATCATAaatc
tttttatcaaacaattttattttgtagaTAGAGTTTTTTCAGACaatttt
g Run BLAST on NCBI transcript from alignment at scaffold_331:450899..452599+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059799 ID=TCONS_00059799|Name=TCONS_00059799|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at scaffold_331:450899..452599+ (Clytia hemisphaerica)
gtaactttcAATGACCaacaggattttgagtttgaccaaCAGGATTTCAT
TTttgtcggacatgatgtccaattgactgaaaatatttatttgcagccct
gagTGTATAATATTTTGTAAGCTTAAAAGCATTTGATATACTGATTTGAA
AGAAGGAGggaattgaaaaagaatgtcaAGGAACCAAGCAAAACACACAA
ATAAGTTAAGTATTTCTgcgtaaaaagaaaaatcaagtgagttttttttt
gtcaCTCGCATTTCCACACAATACTATTCTTTTTGGCCTGTAGAGAAATA
ATAacataaagtttttttaaatagtcAACAAAGGTCAAGCTCAATAAGTT
TGTATGTTGAAAATGGCAACACTTCGTAACCTTCAccaatcaataaaatc
aaagatttcAATACAACAATTTAAGCGACAGTTGAGTGTCACTGTGTACT
GTCATCAAGAATTTTTGCGGACTTCTATCAAAGATGATGAGAAGGGAATC
AGGAGAATCACACTAGATGATACAAAGAAAAGGAATGCGCTATCGCTTGC
AATGCTTGATGAATTGAAACAGCATTTACAAGATGTAAATATGAACGAAT
CAGTGAAAGTGGTTGTCCTCTGTCACACTGGATCTGTGTTTTCTGCTGGT
CATGATCTAAAAGAATTGTTAGATGAAACAGGATCAAAGTTCCACTCACA
GATTTTCAATCGATGTACTGAAGTTATGAATCTTGTCCAGGATATTGATG
TACCAGTTATTGCAGAAGTTAGAGGTGTGGCAACTGCTGCAGGATGTCAA
TTGGTTGCCACTTGTGATTTAGCTATTTGTTCTGATACTTCAAAATTTGC
TGTTCCAGGAGTTCTGATTGGTTTATTCTGTTCTACACCTGCTGTTGCTC
TTGCACGCGCAGTGAACAGAAAACAAGCTTTAAAGATGTTGCTCACAGGT
GATCCAATCAATGCAAAGGAAGCATTAGATTGTGGTTTGGTCAACAAAAC
AGTCCCCATTGAAGATGTTGAAAAAACCACACAGGAACTAGCAGAGAGAA
TCACACGACACAGTTCTCGTGTCATCGGTCTTGGCAAAAAGACTTTTTAT
CAGCAAATCAAAGAGAACAGAGATGAAGCCTATTGTATTACAGGTAATGT
AATGGTTGATAATCTTACCTATGAAGATGCACAAGAAGGGATCCGGGCTT
TCTTTGAGAAGCGCCAGCCTGAAtggcaaaataacaaataaCACAACACT
GGAACATGCATAGATACAGCTTTATTAAATTATAATGTAAAATATCCTAA
CTCCTGATTGGCTTTGTAACAACAATGCAAGTAAAAAGTCAGTGCAAATC
TAGATTAATTCACATTATCTGTAATTTTACTGATGGTTTATTTGAAAAAG
GTCTTTATAATTTTGTTATTTAGATAAaactcaaattgttcttaaaattt
atttttgatgggTATTAATTACATTTGGATCCTCTGGAAGATGATTGGAA
agttggaaaatatattttccctCTCACATCTAAGACTAAGTAAAGAAGGT
TATcgataataaataaatttaaaaggCTTTGTGAGAAAAATCCTAACGGT
TCATCTCcgatatattttattgtttgtaGAACTTTTTTACATCATAaatc
tttttatcaaacaattttattttgtagaTAGAGTTTTTTCAGACaatttt
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059799-exon-scaffold_331-1491911889:450899..452599 | TCONS_00059799-exon-scaffold_331-1491911889:450899..452599 | Clytia hemisphaerica | exon |
| TCONS_00059799-exon-scaffold_331-1510915933:450899..452599 | TCONS_00059799-exon-scaffold_331-1510915933:450899..452599 | Clytia hemisphaerica | exon |
| TCONS_00059799-exon-scaffold_331-1575043694:450899..452599 | TCONS_00059799-exon-scaffold_331-1575043694:450899..452599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:450899..452599 + |
Blast
BLAST of TCONS_00059799 vs. Swiss-Prot (Human)
Match: ECHD3 (Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Homo sapiens GN=ECHDC3 PE=1 SV=2) HSP 1 Score: 270.011 bits (689), Expect = 4.974e-85 Identity = 131/247 (53.04%), Postives = 176/247 (71.26%), Query Frame = 3
Query: 495 GIRRITLDDTKKRNALSLAMLDELKQH-LQDVNMNESVKVVVLCHTGSVFSAGHDLKELLDETGSKFHSQIFNRCTEVMNLVQDIDVPVIAEVRGVATAAGCQLVATCDLAICSDTSKFAVPGVLIGLFCSTPAVALARAVNRKQALKMLLTGDPINAKEALDCGLVNKTVPIEDVEKTTQELAERITRHSSRVIGLGKKTFYQQIKENRDEAYCITGNVMVDNLTYEDAQEGIRAFFEKRQPEWQN 1232
GIR I L + KKRNALSLAML L+ L D + N+ +KV+++ G VFS+GHDLKEL +E G +H+++F C++VM +++ VPVIA V G+A AAGCQLVA+CD+A+ SD S FA PGV +GLFCSTP VALARAV RK AL+ML TG+PI+A+EAL GL++K VP ++++ T +A +I S V+ LGK TFY+Q+ ++ AY +T MVDNL D QEGI AF +KR+P W +
Sbjct: 55 GIRNIVLSNPKKRNALSLAMLKSLQSDILHDADSND-LKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLAAAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWSH 300
The following BLAST results are available for this feature:
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