TCONS_00059784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059784
Unique NameTCONS_00059784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059784 ID=TCONS_00059784|Name=TCONS_00059784|organism=Clytia hemisphaerica|type=transcript|length=312bp
ATTTTCCCAACCTCATTTGCAAGTTGTCCATCTCTTATCGCGTTTTCTAA
TCAAGTACCTTGCCGTCAAATCATTTGTGTCAATCAAGCAATGGAGTCGA
TAAAAATTGCGACAATATTGTTTTCAATTTGCTTAGCTGTGACACAAGGT
TGCCAAGACACACTTCCACAATGTCCATACTATCCTCAAGCATGTACTGA
TGTTCCCGAACTATGTCTCAAAACATGTAGACTGTGCAGTAAGTACCATG
GACTGATAGTGATGTCTTCTACctgtattgggcttttccagaaataaaac
cgtataccccct
Run BLAST on NCBI

transcript from alignment at scaffold_331:151277..152024+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059784 ID=TCONS_00059784|Name=TCONS_00059784|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at scaffold_331:151277..152024+ (Clytia hemisphaerica)
ATTTTCCCAACCTCATTTGCAAGTTGTCCATCTCTTATCGCGTTTTCTAA
TCAAGTACCTTGCCGTCAAATCATTTGTGTCAATCAAGCAATGGAGTCGA
TAAAAATTGCGACAATATTGTTTTCAATTTGCTTAGCTGTGACACAAGGT
GAGTTTAGTGTTTAGTGTGTTTAATAATCCAATCAATACATTTAAGACCG
ACGAATTTAGCGAAGgagtaaaaaaaagtaaatgaaaGAAGTTTTTTTGC
GTTCTCAGGTATCTCAAAGAAATTCTGCTTGGAAAAGTTTCTTAACTTTC
AAGGTCAGGAGagaaaactgttgaaaattgaaagagTTCAGCAAAAATGA
TCTGAAAGNATTCTGCTTAGAAAAGTTTCTTAACTTTCAAGGTCAGGAGa
gaaaactgttgaaaattgaaagagTTCAGCAAAAAGTCATTTTTACCAAA
AGTGTACTCTCTTAAGGCTCAAGGTTTGGGGCGCCAATATACCTTATCCC
ACAAGCAGCTTTGTTAGACCTCCCCCCAAAGGTTGATCTGTCTGTCTTAA
CTGCAATGTAAttcttactcaattttttgaacaGGTTGCCAAGACACACT
TCCACAATGTCCATACTATCCTCAAGCATGTACTGATGTTCCCGAACTAT
GTCTCAAAACATGTAGACTGTGCAGTAAGTACCATGGACTGATAGTGATG
TCTTCTACctgtattgggcttttccagaaataaaaccgtataccccct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037611XLOC_037611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059784-exon-scaffold_331-1491911889:151277..151424TCONS_00059784-exon-scaffold_331-1491911889:151277..151424Clytia hemisphaericaexon
TCONS_00059784-exon-scaffold_331-1510915933:151277..151424TCONS_00059784-exon-scaffold_331-1510915933:151277..151424Clytia hemisphaericaexon
TCONS_00059784-exon-scaffold_331-1575043694:151277..151424TCONS_00059784-exon-scaffold_331-1575043694:151277..151424Clytia hemisphaericaexon
TCONS_00059784-exon-scaffold_331-1491911889:151861..152024TCONS_00059784-exon-scaffold_331-1491911889:151861..152024Clytia hemisphaericaexon
TCONS_00059784-exon-scaffold_331-1510915933:151861..152024TCONS_00059784-exon-scaffold_331-1510915933:151861..152024Clytia hemisphaericaexon
TCONS_00059784-exon-scaffold_331-1575043694:151861..152024TCONS_00059784-exon-scaffold_331-1575043694:151861..152024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:151277..152024 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	67.7844	72.773	0	0.209823	0	0	196.191	197.256	0.332915	0	0	0.35893	0	0	0.944282	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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