TCONS_00059750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059750
Unique NameTCONS_00059750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059750 ID=TCONS_00059750|Name=TCONS_00059750|organism=Clytia hemisphaerica|type=transcript|length=1438bp
cttgaattctaagggcaaaacattaatttttgcactaagtgaaaaatgtg
tcacagaaataatcattttttagctttttttgtaaaatcagtccaaaaag
taaccaaaaaataggtggcNATCATCGTTCAACTACCTCTTGATACTGAC
GAAGAAATAGATACCACCAAAGTTATCAATTCTGTTCTTCCCACTAAAGA
TGTCGATTGTCTGAACGAGGTCAACACTGGGAAATTAGCACATGGTGATT
TGAAAGGCTTTCTACCTTGCACACCACACGGCTGCATGACCATGATCGAA
GAAAGCGGAATAGAATTACAAGGAAAACGAGCTGTGGTTGTTGGAAGATC
GAAAATTGTGGGTATGCCAATGTCAATGCTGTTAACTTGGGCAAACGCCA
CCGTCACCATTTGTCATTCAAGGACGCAAAATCTAGAAGATATTGTACGA
GAAGCTGATGTCTTAGTAGCAGCCTGTGGCCGTCCAAAGATGATCAAAGG
CTCGTGGATCAAACAAGGAGCGGTTGTTATTGACTGTGGTATTAACTCTA
TTGAAGATGCATCAAGAAAGAGTGGCAGAAGGTTGGTAGGGGATGTTGAC
TATGATGAAGCCAAGAGGAGAGCATCTTACATCACACCTGTACCCGGAGG
TGTTGGTCCAATGACAGTGTGCATGCTGATGAAGAATACGTTGGAAAGTG
CTAAACGACATTTGAATCTGCAGGATGAGAAACGTGAAGAAGCTGCTAAA
TAAAACAACCATCCTGAATTCCTTgggtttgaatattttttgacgtgGCA
AACGAGAAATCATTTTGATTGCCAGAAATTTATCACTATAatattgtatt
agattttagaTGTAAATAGTTTGGTTATAATGTTTTATGTTATTTTCATt
ccttttttatataatatttagCTTAATATTAGctttttgaaacaaatttt
cattataGATTCACTAACTAGCTTCAAATTTGATGTTCTCTAAAGAATAt
gtagaaaatattttgttacaaGCGCAATTGTACAAAGCTCGTTATATATT
TGGGTTTTTGAGCTAAAAACTTAGGCAAAGTTAGATATATCCCCTAGcat
cattaaatttttattttttcaagtaGATTCATAGATAGATTTTTCCAAAG
TTTTCACTAACATGACAGTAATTTTTAATCTAGTGTGATAattccaaata
ttttgatttattataATTTAATCAACTAAAATATTACAATATGTAAAGTA
AATTATATTCAACAAAACCACTAAATTTAGTATGACAACTTTTGTGTctt
atgatttttattttataactttttattattttatgttgaatttagaaaaa
tagAACCAAGACTGCTTCTCCTTCATCATTTCAGCTCCtttttaacaccc
ctgtgtcagtgACCTGGTGAGATGCTTTAGGAATGGGG
Run BLAST on NCBI

transcript from alignment at scaffold_330:542756..546737-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059750 ID=TCONS_00059750|Name=TCONS_00059750|organism=Clytia hemisphaerica|type=transcript|length=3982bp|location=Sequence derived from alignment at scaffold_330:542756..546737- (Clytia hemisphaerica)
CTTGAATTCTAAGGGCAAAACATTAATTTTTGCACTAAGTGAAAAATGTG
TCACAGAAATAATCATTTTTTAGCTTTTTTTGTAAAATCAGTCCAAAAAG
TAACCAAAAAATAGGTGGCNATCATCGTTCAACTACCTCTTGATACTGAC
GAAGAAATAGATACCACCAAAGTTATCAATTCTGTTCTTCCCACTAAAGA
TGTCGATTGGTAAGCACGTGTGATTGACCTAGTGTAATTCATCATATGCA
CCACTGCAATGACTTCATGAAATGTGTAGATATAATGTTTTTGATTTTCG
CTTGCAGCTAATCATTCAATTTCAGAATAGGTGTAGGGGTGCATATTCTA
AATTCCTTTCTCTTAAAACAGGGGTCTCATTTGAAAATTATAAGGGCTTG
AAATAAGGGTCGATCACCAGACATGCCCGACCCAAAAATCAACTTTTCAA
GCTAATGCACGCAACTCTGAACAAACATTTTGTACCGACCACTTGAAATC
ATTATGCGCCATGTTTAGCAATTTTACACCGTTTAGTGGGGCTTAATATA
TAGTATTCAAAAGAGAATTGTCTTTTGAATTTCAAATTTTTAAATCACAC
TCTTTTAGTCTGAACGAGGTCAACACTGGGAAATTAGCACATGGTGATTT
GAAAGGCTTTCTACCTTGCACACCACACGGCTGCATGACCATGATCGAAG
AAAGCGGAATAGAATTACAAGGAAAACGAGCTGTGGTTGTTGGAAGATCG
AAAATTGTGGTATGTTATAGAGGTCGACTTTTAAGGTCATGCTGCAAAAC
CACCTTTCCTTAGAAAGTTTTCTGTATCTATTCCAAGATTTGAAAAACAA
GTTTCACTTTTAAACAAGCTTAAACCTCGCGGTTTCAGAAAACTGGATCA
ATATCATTTATTTCAAATTCGAATAACTTAACTTAAAAAAATATAAAAAC
ACATTCATCACCGAGTCTTTAAATAATGCAAAAGATACACAAAAGAAATA
ATTCGAATCTCATGTTTATATTCCAGGGTATGCCAATGTCAATGCTGTTA
ACTTGGGCAAACGCCACCGTCACCATTTGTCATTCAAGGACGCAAAATCT
AGAAGATATTGTAAGTAGTTATGTGTTTTAATGATTGGCTGTTTTGATGA
AATTTCCTCAGAAATGAACCGGAGAACGTTATCACAGATCCAGGCTAAAA
GCTGACATTAGGTTCCCATTTTCAGCACTCAGTTTGAAGTTTAATTTGCA
TTTGATCGACGCTTTATTCCCTCTTTGATTTTTCAAAAATATCATACTTT
GTTTTTGCTCATTCTCTGAACAACCTGAATTTGTTCAAAAGGTACGAGAA
GCTGATGTCTTAGTAGCAGCCTGTGGCCGTCCAAAGATGATCAAAGGCTC
GTGGATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCTCTTCCAAGAGTCTGGGTGGTGGTATGTAAAAATTCGT
AAAAATCCTTTTACTACTCATATATGTCTGAGATTTTACTACCGACCCCC
CCCCCTGGTCTGAGTTCGAATAAGCGAGATCTTAAGATATTTTAAATTAA
ATTGAGATTCGTNCACCGAGTCTTTAAATAATGCAAAAGATACACAAAAG
AAATAATTCGAATCTCATGTTTATATTCCAGGGTATGCCAATGTCAATGC
TGTTAACTTGGGCAAACGCCACCGTCACCATTTGTCATTCAAGGACGCAA
AATCTAGAAGATATTGTAAGTAGTTATGTGTTTTAATGATTGGCTGTTTT
GATGAAATTTCCTCAGAAATGAACCGGAGAACGTTATCACAGATCCAGGC
TAAAAGCTGACATTAGGTTCCCATTTTCAGCACTCAGTTTGAAGTTTAAT
TTGCATTTGATCGACGCTTTATTCCCTCTTTGATTTTTCAAAAATATCAT
ACTTTGTTTTTGCTCATTCTCTGAACAACCTGAATTTGTTCAAAAGGTAC
GAGAAGCTGATGTCTTAGTAGCAGCCTGTGGCCGTCCAAAGATGATCAAA
GGCTCGTGGATCAAACAAGGAGCGGTTGTTATTGACTGTGGTATTAACTC
TATTGAAGGTTCGTGTAAAACAGTTTTATTCTGGATTAACAAGTGAGCAA
GTTCTATTGACATTCCGACCATAGATTGATAATACCCGAAGGATTAGATG
GAGTGCTTTAAAGCTCTTCCAAGCAAAACAAAAGTGAATATCGCAAAAAA
TGTTGCTGCTATTGTTTTCGAAAACCTGCGAAGCTTCTGATTGGTAAAGT
GCTGAAATTCTATTGTAATGTCACGTGACTTAGGTAGGATTTCCTACCTA
ACCTCGGCACACTTTTGAGCAAAAGCAAGATATCTAGCCCTTCGAGCTAC
GATTCCGACACTGTGTTGTAGATTAACGCTTTTTGTCTTTAAAAAGAGTC
TGTTAATTAAGACTTTGCTTTAGTTCTTCTAAAATGTGAGTCCTTTTTTC
ATATGGTTACAGGAGAGAATTAGTATAATATCCCAATAAAAATAAGCTTG
TGTTTAAGTTCTTACGTGCTTTTGGGGTATTCATCCAAGTCCTTTTTTTC
CAGATGCATCAAGAAAGAGTGGCAGAAGGTTGGTAGGGGATGTTGACTAT
GATGAAGCCAAGAGGAGAGCATCTTACATCACACCTGTACCCGGAGGTTC
GATTTTTCATTCATATTACCACAAATTTATTTATTTTCCTACAAAGTGAA
TCGCTATTTCATTAATTAGCTGTTTCATTGCTTTTCTTCAAATGCCCCTC
TTAAGGTTAACATGCAAAAATTAAACTCTCAATATTTTCGTCCCCGTCGT
TGATGATATATTTTCATTGTCTCTTTTCAATTAAAATCAAAGGGAGTTTG
TTTTTGACACTGTTTTTAGTCTTTTATACCCCGCCTTGAAGTACAAAGGT
CAAGAATTTTACACCTGAATCACCATAATACTTCATTAAAGTGATTAAAT
GCAATTCTCAAAACATTCTGAGTTGTTTTGATGAATCATGAGATAGCCTT
AGAACATACTAAAAGTTTTTGACCATTTTGAATTTTATTCTAGGTGTTGG
TCCAATGACAGTGTGCATGCTGATGAAGAATACGTTGGAAAGTGCTAAAC
GACATTTGAATCTGCAGGATGAGAAACGTGAAGAAGCTGCTAAATAAAAC
AACCATCCTGAATTCCTTGGGTTTGAATATTTTTTGACGTGGCAAACGAG
AAATCATTTTGATTGCCAGAAATTTATCACTATAATATTGTATTAGATTT
TAGATGTAAATAGTTTGGTTATAATGTTTTATGTTATTTTCATTCCTTTT
TTATATAATATTTAGCTTAATATTAGCTTTTTGAAACAAATTTTCATTAT
AGATTCACTAACTAGCTTCAAATTTGATGTTCTCTAAAGAATATGTAGAA
AATATTTTGTTACAAGCGCAATTGTACAAAGCTCGTTATATATTTGGGTT
TTTGAGCTAAAAACTTAGGCAAAGTTAGATATATCCCCTAGCATCATTAA
ATTTTTATTTTTTCAAGTAGATTCATAGATAGATTTTTCCAAAGTTTTCA
CTAACATGACAGTAATTTTTAATCTAGTGTGATAATTCCAAATATTTTGA
TTTATTATAATTTAATCAACTAAAATATTACAATATGTAAAGTAAATTAT
ATTCAACAAAACCACTAAATTTAGTATGACAACTTTTGTGTCTTATGATT
TTTATTTTATAACTTTTTATTATTTTATGTTGAATTTAGAAAAATAGAAC
CAAGACTGCTTCTCCTTCATCATTTCAGCTCCTTTTTAACACCCCTGTGT
CAGTGACCTGGTGAGATGCTTTAGGAATGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037580XLOC_037580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059750-exon-scaffold_330-1575043694:546529..546737TCONS_00059750-exon-scaffold_330-1575043694:546529..546737Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1575043694:545979..546129TCONS_00059750-exon-scaffold_330-1575043694:545979..546129Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1575043694:544873..544956TCONS_00059750-exon-scaffold_330-1575043694:544873..544956Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1575043694:544530..544641TCONS_00059750-exon-scaffold_330-1575043694:544530..544641Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1575043694:543942..544034TCONS_00059750-exon-scaffold_330-1575043694:543942..544034Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1575043694:542756..543544TCONS_00059750-exon-scaffold_330-1575043694:542756..543544Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1510915933:546529..546737TCONS_00059750-exon-scaffold_330-1510915933:546529..546737Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1510915933:545979..546129TCONS_00059750-exon-scaffold_330-1510915933:545979..546129Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1510915933:544873..544956TCONS_00059750-exon-scaffold_330-1510915933:544873..544956Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1510915933:544530..544641TCONS_00059750-exon-scaffold_330-1510915933:544530..544641Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1510915933:543942..544034TCONS_00059750-exon-scaffold_330-1510915933:543942..544034Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1510915933:542756..543544TCONS_00059750-exon-scaffold_330-1510915933:542756..543544Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1491911889:546529..546737TCONS_00059750-exon-scaffold_330-1491911889:546529..546737Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1491911889:545979..546129TCONS_00059750-exon-scaffold_330-1491911889:545979..546129Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1491911889:544873..544956TCONS_00059750-exon-scaffold_330-1491911889:544873..544956Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1491911889:544530..544641TCONS_00059750-exon-scaffold_330-1491911889:544530..544641Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1491911889:543942..544034TCONS_00059750-exon-scaffold_330-1491911889:543942..544034Clytia hemisphaericaexon
TCONS_00059750-exon-scaffold_330-1491911889:542756..543544TCONS_00059750-exon-scaffold_330-1491911889:542756..543544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:542756..546737 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43777	1.45164	0.434543	0.566545	37.5391	28.3696	17.5362	17.2604	0.962844	8.78831e-09	0.00316923	1.10781	0.628642	2.3374	2.18967	2.21874	9.64932	6.25921	1.21757	1.68087	3.8768	4.1325	6.61057	5.60752	5.61148	1.14721	16.8125	8.46448	39.1696	25.681
Blast
[Close]
BLAST of TCONS_00059750 vs. Swiss-Prot (Human)
Match: C1TC (C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 9.255e-78
Identity = 121/199 (60.80%), Postives = 157/199 (78.89%), Query Frame = 1 
Query:  121 IIVQLPLDTDEEIDTTKVINSVLPTKDVDCLNEVNTGKLAHGDLKG-FLPCTPHGCMTMIEESGIELQGKRAVVVGRSKIVGMPMSMLLTWANATVTICHSRTQNLEDIVREADVLVAACGRPKMIKGSWIKQGAVVIDCGINSIEDASRKSGRRLVGDVDYDEAKRRASYITPVPGGVGPMTVCMLMKNTLESAKRHL 714
             +VQLPLD++  I+T +VIN++ P KDVD L  +N G+LA GDL   F+PCTP GC+ +I+E+G+ + G+ AVVVGRSKIVG PM  LL W NATVT CHS+T +L++ V + D+LV A G+P+M+KG WIK GA+VIDCGIN + D  + +GR++VGDV YDEAK RAS+ITPVPGGVGPMTV MLM++T+ESAKR L
Sbjct:   97 FLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFL 295
The following BLAST results are available for this feature:
BLAST of TCONS_00059750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
C1TC9.255e-7860.80C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo... [more]
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