|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059742 ID=TCONS_00059742|Name=TCONS_00059742|organism=Clytia hemisphaerica|type=transcript|length=758bp
CTTTTGACATATCTCCACCGTACAGgtttgaaatcaaaacattaaaaatt
tcccagaagacgaaaatttgaaaatctgcAGCATCCACACACCACTGAAA
TCATCTCCATCTGTTCATCAGTCCAAGAACTGAAACTAAAGAACAGCAGA
GCAGACCATGTCAATAAAAACAGTTGTTACATATTCTTGCATGATTTTTA
GCATTATTATTTTAATAATCTCATTAGCAACAAACTATTGGCACGAGTAT
GAGATTCCCGATGGAaagacACCTCTCACAGTAACTTACTTCAATGTAGG
ATTATTTGAGAAATGTACAGAGATTCACTATCGTTGGGGATGGCGCAATA
CAACAGTGGAAGATCTTGGGTGTGAAGATTATGAACCTCCCCTCTCGCTA
GATGATTGGGAAaTGCGACGAGACACGTTAGTTGTGATGTTTGTATTAGC
TGTCATTTTCACCCTGATCAGTTTCATCTTCATCACTGTTTATTGCGCTA
CTGGAAAATACTACTTCCCTGTTGGACGAACTGCTATCTGCTTCATTTTA
GCTGCAATTTGTGTAATGATAGGTTTGATAGTCTACACAAACACTTTCAT
CAACCACGATGTTGCATTCTCATGGTCTTACGGCGCTGGATGGTCAGCCG
TTGCAATGTACATCATCACGACTATCTTGATCTACGCTGATAAATAGAGA
AATCCCCAATTTtattgggtggaaattttttagGAAGATACGTTCCATGA
CAGTCCAT Run BLAST on NCBI protein sequence of TCONS_00059742-protein >TCONS_00059742-protein ID=TCONS_00059742-protein|Name=TCONS_00059742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MSIKTVVTYSCMIFSIIILIISLATNYWHEYEIPDGKTPLTVTYFNVGLF
EKCTEIHYRWGWRNTTVEDLGCEDYEPPLSLDDWEMRRDTLVVMFVLAVI
FTLISFIFITVYCATGKYYFPVGRTAICFILAAICVMIGLIVYTNTFINH
DVAFSWSYGAGWSAVAMYIITTILIYADK Run BLAST on NCBI transcript from alignment at scaffold_330:418506..424874- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059742 ID=TCONS_00059742|Name=TCONS_00059742|organism=Clytia hemisphaerica|type=transcript|length=6369bp|location=Sequence derived from alignment at scaffold_330:418506..424874- (Clytia hemisphaerica)
CTTTTGACATATCTCCACCGTACAGGTTTGAAATCAAAACATTAAAAATT
TCCCAGAAGACGAAAATTTGAAAATCTGCAGCATCCACACACCACTGAAA
TCATCTCCATCTGTTCATCAGTCCAAGAACTGAAACTAAAGAACAGCAGA
GCAGACCATGTCAATAAAAACAGTTGTTACATATTCTTGCATGATTTTTA
GCATTATTATTTTAATAATCTCATTAGCAACAAACTATTGGCACGAGTAT
GAGATTCCCGATGGAAAGGTATGATTTTTTTTCATATTTTTTTTTCTTTT
CGTCCTTCCATAGTTTTCCATATTTTGCTGTAGCCAGTTTTTTGGCCAAT
TACACCATGAATATTCTTGTAGAGTACCGCAGGTTGGTCTAATGTCAACA
CCCCCTCTTCTATACGTTTGATACCCTCATTTAGACACTGGAGATAGGAA
TAATAACATGGTGCATTCTTCAAAAAAATGTGTTCAAATCACAAAGGGAA
TAGGAAAGAAATATGCAATATATAACGGCCTGCTACTAGGGATGTTGATA
GAATTAATCAATACGATTGATTTGGAGCAGGGATCCATCTTTAAAAAAAT
ACAAATAGCCAAAAATAAGAAAAATTCAAAACAATGAAAAATGTCTCCAA
AGCTACTTACATGTAAAGTACAGGAACTCCCCAGAAATGAAAACATGTAC
CCCAAAAGTAAAGAAAAATGCCATCAAAGTCTGTCAAAATAAAATAGAAA
TGTGTGCCACCAGAAATTGAATGTCATGCCAGAAAAGAAACCTAAGCCCT
GTAAAAAATTGAAGCTCTGGCTGACTAAAGAATAAATATAAAAGAATAAT
AAAATCTATTCAAATGAAAAACGTACTAAAACCACTGTAAAAAAAACACC
ACCACAACACCACTCCACAATCTCACTACACTCAAGTCTGCAGAAAAATC
ATCTCAAAATTTAAAAGTATCAAAAACATGAAACAAGGAGAATAAAACGC
CACTGAAAAATGAATAAATCAGAAGTCCAGAAGGTGTCAATCAAACAATT
TCAAAACAAAAATCACGATCAAACTAATCGAAAGTGAAATAGCGATTCGA
TTGTCAATTACATTCCAATGATCTTCATATATGTTCGCTAAGTTAGAGCA
ATTAAATTGGCCCAATCCTGTAGAGCTTTAAGCATGGTGGCCGTCAATAC
ACCATCAGAAAATCAGATAAGAGTGAGGGCACGAGTACGGTATGAGAGGA
TAAAGAGGACAATTGAATCAATCAAACAAAATCAAACATAGTTGAATATA
TACAATCAAACATAATCAAAGCAATTGAACAGCAATACCTGGGTAATATT
TGATTACGATTCTATTGCGTTCTTCAATTAAATTGCAATTATTCTATTAC
GTTTGATTGTGTTCAATTGATTCGACGTTCGATTTGTTCAATTGACACCA
TCTGGAGAAGTCAGATAGGAAAAGGGCCATCCACCACATATACTCTCTTT
TCTGCTGAGAACTTTCTTTTTATTGAGAACCCTTTTTATTTTTAAATTAA
AATGATTACCGTAGGAAATTATAATATATATACACAAAATAATTACTTTA
TAAAAGAAAATGTATATCATAAACAACAGACATAATGAATATCACAGAAA
CAAAGGAAACTAAGAGCAGCAGGAGCGAGACAAAAAGGGACACAAAACAA
AAACAAAAGACTAAAGGTGACATAAAAAAGTAGAAAGCAACCAGGTTTTT
CTGCCCTGTCTCGGCTATTACAGTGCTGGTTGACAAAAATAAACATTAAT
GATTGTCAAAAATATTATCAGAAAAAAGGTTAAGTCTTAAATCAAAAGAA
TTTCGTCTAGAATTTGGCTTAGCCTAAAAACATCTAATTTCAGTATTTTT
AAGTCCTTTTGCTAACAGATCTGAACAGATTTAAAGAATTTAGATTCTTT
TAGTTGTGTGATAGCCAAGCAATACTGATGTCTTTACGTTACTTTAATGG
GATGAATTTTCGTGGGGATTAAATTTTATGCATTTTGCGGATTTGGTTGT
CATCCGCAAAATTACATTTGAAACGAAATGTAAAAATCAACAGAAAATTC
TTGAACTTAAAAAGAAACTAAAATGCAAATTACATTTTTGCGGATTTGGT
TGTCATATCTCGCTACTTCGCTATTTTGCTACTTCTTCTTGCAGCCACTA
TTAGCTTTAGTTGTTTTCATTTTATTAGGTATTTTAAATAACTTTTTATT
TTCAATATCATGATAATGTACGTTAGCGTATTATGTGATTACTTAATAGA
ATAGAATTAAGTTGAAAAGGGGGGGGGTAGCAAGGAAGGGGGGATAGTTT
AAGAAGGGGTGGCTTACATATATATTGTAGATTATTTTCAAGCACAGAAA
AAAAATTTGGTCTTCATGAAAGGAAGTTTTCTGTTAGAGTACAGTCTGAG
TCAAAAAGAACAAAGAAGTTTTTTATTTCACTTTCTCTCTAAGATATTTC
ACCATATGATTGTTACCTATTTTTGTCCAAAATCCTAGGGGATAGGCATT
TTTAAAGGTTAGGGGATGCCAAGAAGGGGGATCAGACCCTTTTCTGCACT
ATGTGTTTATTTCAACAACCAATATGTATAATTTGGAAGTAAAAAAATAA
TCATAAAAATCATGAAAATATTGTCTCCTGATAATGCCAGTCACGAAATT
AAATCTTGAAAAATCTTCAAATTTCCTGGATGACCTCAACCGCAAAATTT
AATCCCCGATAAATTATTATATTATTATTATTATTAAATTATATTAGAGT
ATTTTGACAGCATTTGCTAAGAAATTCCCTTGTATCATTCACTCACGACC
TCACTCAGTACAGTCTAGGGAGAGCCTTATTGGGGCCAATGATACCAGAC
TAATTTATATATTTTTGACGTCAAATAAAATCTGTGCGGTTGTGCTCTTG
ACAATGCAACAAAATGGCGAAAACTTCTGAAAATCTTAACACGGAAATTT
CATCAAAATATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCGTGCGCCTACAACTGT
AAAATTGTAAAATGTTAAGCATGATTATTTCATAGAGGTCGATAGACCTG
AGAAATATATTACTGTAAATTAAAAAAAAAATTAAAATTAAAAAATTAAT
TGCTTCAATTTTGTGCTGAAATAACATAATTTGAAATGAAAATCACCAGT
TAGAGCTGTCCTATTTTTTCACAGTTGGAAAGATAGTTTATAGTGTAATA
TAACCATAAAATCACTCGAGGAGTATGAGGTTTGGGAGGTGTAGTGTCAA
TGAATCTTTTTTCTAATCTCCAGTGTCATGTCCTCCACACGCCAAAGTGA
TAACACCTATAGAATTCTGAAAGTTTTAGAAAATACGATTTACTTTTTGT
TTTAGACACCTCTCACAGTAACTTACTTCAATGTAGGATTATTTGAGAAA
TGTACAGAGATTCACTATCGTTGGGGATGGCGCAATACAACAGTGGAAGA
TCTTGGGTGTGAAGATTATGAACCTCCCCTCTCGCTAGATGATTGGGAAA
GTATGTTTTTGTTTTGCAATTGAAAAATGAAAAAATATTTTTTAAATTTT
CATAGAAAAGTTCTAAGAATATCTTTCAACAAAGACCCCCACACACTTTC
GAATTTCGTAACTTATGTTAAGCCGTGGTTACACTACATTAATATCTTTA
AAATTTTTGGAATTTTTTAATCAAAAATAAATAAAAGAAATTAACTATTT
TTGAAATTTTTGTATGTTGTATCAAATCTTCAATCGTTTTTTCTCAACTC
ATTTTCTCACTCAACAAACGAAATGAAGAGTGGAAGGAGGAAGACATCAG
CACGTATTGTGCTAATTCTTATGAAACGAAAATTTGAGAGGAAATATTCG
AAAAAGAAAAGTCGAGCTAAAAGGTCTTGCTGGGTACGCAAGTGGTTAAA
GTTGAGGAACGAAAAAAGTACCTACAACAACATATTTGCTGAACTTCGTC
TTCGTGACCAAGAAGAATTTAGATCTTATTTAGAACTTATCTTATTTAGA
ACTTATCCTATCTTTCACCCCTATTTCATATTACGTTTTAAAAATTTCAA
ACGCTAGAAAATCCATTCATCGAAAAAAATGTACTGAACTATCATGTTGG
TGACTTTGATCTCGATAGAAGTGAAGAGAAAAACTTTAAACTCTTTACCA
AAAAAATGGTAAAGAATCGCAAGAAATAATTTCTTTTTCAAGAATTTATA
CGTCTTTCTTTTCTTTAAGAGAGGGCTGTTACACTTGTACAATTTTTAAT
CAAAAGACTTGATTAAAAAATCTCAGAAATTTAGAAATAAATTAATGTAA
TGTAACCACGCCTTATATTGGCCTTTTCCAGAAAAAAATTGAATATGGGG
AGTGGAGGATGTAACATTTTTTTGAAATTTACCCCCGGCCATTGTGACTT
TTGACCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCC
GAACAGCAGGTCTATCCCCCCGGACAAGCATCAATTGACCCCCTGGACAT
TCAAAATTGCCGTCTAACAGAGAAAAATTACCCCAAGTCAGAATAAGTTT
GCCCCGGGAAAAAATTTTGTAGATTTTTTACGAGAATAGACCTTTTCATA
AATTACATCACGAACATCACTTGCCTCGTATTCAAACAATTTCCATGGTG
ATCATATCCCTTGAGACATTAAATGATTTTTTTATGAATAGAACTTAGTT
GTAATAAAATCCGCTGGGAGTTAATCACCATTGCATTAATTTTAAAACGA
GGCAAGTACATAATTTACGAGGATTGATATGATAATTAATAAATGTTTTG
TCTTTATGTTTCAGTGCGACGAGACACGTTAGTTGTGATGTTTGTATTAG
CTGTCATTTTCACCCTGATCAGTTTCATCTTCATCACTGTTTATTGCGCT
ACTGGAAAATACTACTTCCCTGTTGGACGAACTGCTATCTGCTTCATTTT
AGCTGGTAAGCCTTCAACCCTCTCAATTAGATGGAGTACAATAATTTTAT
TTTCTATAGAGGGTCCCAGCGAGTGTTTTCTCGTTCATTGATTATGCCTG
AGCTGGTGTATTTTTTCGATTTTAAAATTCTCAGATGCTCTCCTTAAATG
TTATTCCAAGATGCTCCAAGCCTGAAATCCTTTAATTGCTCTTATGCATT
TCTTTCTTGTTTTAGCAATTTGTGTAATGATAGGTTTGATAGTCTACACA
AACACTTTCATCAACCACGATGTTGCATTCTCATGGTCTTACGGCGCTGG
ATGGTCAGCCGTTGCAATGTACATCATCACGACTATCTTGATCTACGCTG
ATAAATAGAGAAATCCCCAATTTTATTGGGTGGAAATTTTTTAGGAAGAT
ACGTTCCATGACAGTCCAT Coding sequence (CDS) from alignment at scaffold_330:418506..424874- >TCONS_00059742 ID=TCONS_00059742|Name=TCONS_00059742|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_330:418506..424874- (Clytia hemisphaerica)
CAATTTGTGTAATGATAGGTTTGATAGTCTACACAAACACTTTCATCAAC
CACGATGTTGCATTCTCATGGTCTTACGGCGCTGGATGGTCAGCCGTTGC
AATGTACATCATCACGACTATCTTGATCTACGCTGATAAATAGTGCGACG
AGACACGTTAGTTGTGATGTTTGTATTAGCTGTCATTTTCACCCTGATCA
GTTTCATCTTCATCACTGTTTATTGCGCTACTGGAAAATACTACTTCCCT
GTTGGACGAACTGCTATCTGCTTCATTTTAGCTGACACCTCTCACAGTAA
CTTACTTCAATGTAGGATTATTTGAGAAATGTACAGAGATTCACTATCGT
TGGGGATGGCGCAATACAACAGTGGAAGATCTTGGGTGTGAAGATTATGA
ACCTCCCCTCTCGCTAGATGATTGGGAAAATGTCAATAAAAACAGTTGTT
ACATATTCTTGCATGATTTTTAGCATTATTATTTTAATAATCTCATTAGC
AACAAACTATTGGCACGAGTATGAGATTCCCGATGGAAAGCAATTTGTGT
AATGATAGGTTTGATAGTCTACACAAACACTTTCATCAACCACGATGTTG
CATTCTCATGGTCTTACGGCGCTGGATGGTCAGCCGTTGCAATGTACATC
ATCACGACTATCTTGATCTACGCTGATAAATAGTGCGACGAGACACGTTA
GTTGTGATGTTTGTATTAGCTGTCATTTTCACCCTGATCAGTTTCATCTT
CATCACTGTTTATTGCGCTACTGGAAAATACTACTTCCCTGTTGGACGAA
CTGCTATCTGCTTCATTTTAGCTGACACCTCTCACAGTAACTTACTTCAA
TGTAGGATTATTTGAGAAATGTACAGAGATTCACTATCGTTGGGGATGGC
GCAATACAACAGTGGAAGATCTTGGGTGTGAAGATTATGAACCTCCCCTC
TCGCTAGATGATTGGGAAAATGTCAATAAAAACAGTTGTTACATATTCTT
GCATGATTTTTAGCATTATTATTTTAATAATCTCATTAGCAACAAACTAT
TGGCACGAGTATGAGATTCCCGATGGAAAGCAATTTGTGTAATGATAGGT
TTGATAGTCTACACAAACACTTTCATCAACCACGATGTTGCATTCTCATG
GTCTTACGGCGCTGGATGGTCAGCCGTTGCAATGTACATCATCACGACTA
TCTTGATCTACGCTGATAAATAGTGCGACGAGACACGTTAGTTGTGATGT
TTGTATTAGCTGTCATTTTCACCCTGATCAGTTTCATCTTCATCACTGTT
TATTGCGCTACTGGAAAATACTACTTCCCTGTTGGACGAACTGCTATCTG
CTTCATTTTAGCTGACACCTCTCACAGTAACTTACTTCAATGTAGGATTA
TTTGAGAAATGTACAGAGATTCACTATCGTTGGGGATGGCGCAATACAAC
AGTGGAAGATCTTGGGTGTGAAGATTATGAACCTCCCCTCTCGCTAGATG
ATTGGGAAAATGTCAATAAAAACAGTTGTTACATATTCTTGCATGATTTT
TAGCATTATTATTTTAATAATCTCATTAGCAACAAACTATTGGCACGAGT
ATGAGATTCCCGATGGAAAGCAATTTGTGTAATGATAGGTTTGATAGTCT
ACACAAACACTTTCATCAACCACGATGTTGCATTCTCATGGTCTTACGGC
GCTGGATGGTCAGCCGTTGCAATGTACATCATCACGACTATCTTGATCTA
CGCTGATAAATAGTGCGACGAGACACGTTAGTTGTGATGTTTGTATTAGC
TGTCATTTTCACCCTGATCAGTTTCATCTTCATCACTGTTTATTGCGCTA
CTGGAAAATACTACTTCCCTGTTGGACGAACTGCTATCTGCTTCATTTTA
GCTGACACCTCTCACAGTAACTTACTTCAATGTAGGATTATTTGAGAAAT
GTACAGAGATTCACTATCGTTGGGGATGGCGCAATACAACAGTGGAAGAT
CTTGGGTGTGAAGATTATGAACCTCCCCTCTCGCTAGATGATTGGGAAAA
TGTCAATAAAAACAGTTGTTACATATTCTTGCATGATTTTTAGCATTATT
ATTTTAATAATCTCATTAGCAACAAACTATTGGCACGAGTATGAGATTCC
CGATGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059742-exon-scaffold_330-1575043694:424607..424874 | TCONS_00059742-exon-scaffold_330-1575043694:424607..424874 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1575043694:420475..420619 | TCONS_00059742-exon-scaffold_330-1575043694:420475..420619 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1575043694:418920..419060 | TCONS_00059742-exon-scaffold_330-1575043694:418920..419060 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1575043694:418506..418709 | TCONS_00059742-exon-scaffold_330-1575043694:418506..418709 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1510915933:424607..424874 | TCONS_00059742-exon-scaffold_330-1510915933:424607..424874 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1510915933:420475..420619 | TCONS_00059742-exon-scaffold_330-1510915933:420475..420619 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1510915933:418920..419060 | TCONS_00059742-exon-scaffold_330-1510915933:418920..419060 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1510915933:418506..418709 | TCONS_00059742-exon-scaffold_330-1510915933:418506..418709 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1491911889:424607..424874 | TCONS_00059742-exon-scaffold_330-1491911889:424607..424874 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1491911889:420475..420619 | TCONS_00059742-exon-scaffold_330-1491911889:420475..420619 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1491911889:418920..419060 | TCONS_00059742-exon-scaffold_330-1491911889:418920..419060 | Clytia hemisphaerica | exon |
| TCONS_00059742-exon-scaffold_330-1491911889:418506..418709 | TCONS_00059742-exon-scaffold_330-1491911889:418506..418709 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:418506..424874 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
