TCONS_00059739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059739
Unique NameTCONS_00059739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059739 ID=TCONS_00059739|Name=TCONS_00059739|organism=Clytia hemisphaerica|type=transcript|length=473bp
CCCAGAGAGTTTACATTAAAAAGGAAAAGCACAACAAAATTATAATTCAT
ATAGACAAAATGTCACGCCACTTGATGTACAAGAAACATATTGAAAAGAG
ACGAATCAAAGTTGGTGTATTAGCCACACTGTATATCTTGGTAGCAGTTG
TATTCACTTCACATCAATTCTTAAATTCATTCGGTCAAACAGGTTCACAA
GTCTATGAGGAACATTATGTGGGCAGAAAGCTGCTTCAAGTTGCAAATGG
ATCCTCATCTGCCAACGAAACTGAAAAATGTACAGAACCAAGTGTGAAAG
AGTTTCCAAGTGATTTATTCACACAACAGCAAAGAAGATATGGAGCTGTT
ATCCTCCACATACTCATGGCCATATATATGTTTGCGGCATTAGCCTTTGT
GTGTGATGATTACTTCATATCAGCACTCGACAAAATTTGCCAGCGTTTGG
ATTTATCAGAAGACGTGGCTGGN
Run BLAST on NCBI

transcript from alignment at scaffold_330:333403..335981-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059739 ID=TCONS_00059739|Name=TCONS_00059739|organism=Clytia hemisphaerica|type=transcript|length=2579bp|location=Sequence derived from alignment at scaffold_330:333403..335981- (Clytia hemisphaerica)
CCCAGAGAGTTTACATTAAAAAGGAAAAGCACAACAAAATTATAATTCAT
ATAGACAAAATGTCACGCCACTTGATGTACAAGAAACATATTGAAAAGAG
ACGAATCAAAGTTGGTGTATTAGCCACACTGTATATCTTGGTAGCAGTTG
TATTCACTTCACATCAATTCTTAAATTCATTCGGTCAAACAGGTAGGCTA
TAGACCTTTTCATAAATTATGTTACGAACATCACTTGCCTCGTTTTGAAA
TTATTTCCATTGTGATTAACTCCCAGCGGATTTTATTAAAACTACTATTC
GTAAGAAAATCATGTTTATGTCTCAAGGGACGTAATCACCATGGTAATTG
TTTGAATATGAGGTAAGTGATTCGTGATGTAATTTATGAAAAGATTTATT
AATCTATGTTTTGTTTAAAAAGTATAAACATTCGAAATTCTTGCGTTCAG
TGTTACTTCGTAAAAGGACTTTCTTTTGTTTCTTTGCTGTAGTTTTTGTA
AGTTTGAAAGTTCCTGTGCTGTGGTTGATATTGAAGTTATCCTTGATCTT
TTTAGAATTTCTTTTTTTTTTTACTTGAGGTAAAAAAAGCCTTCATTCCT
GAAAAATACCATAGTTCGGAAGGGGGTCACTACCCCCCCCTACCCTAGAG
CTACCCCCCCTACCCTAGGTTCTTCCCCCTTTTAAAATTTGATGCTACCC
CCCTCAAAATTTTAAAATCCTACCATAATTCTACCGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTTTCTGAGATTT
TCTGAACATCGCTACCCCCCCCCTTTATAAAGGGGGGGGGTGCGAACTAT
GAATACCCACTTAAAATTCGAAGGCTTTTATCAAAAAAGTAAAGTAAAAA
ATTGCCTTGGAAAATATTTTTATTGTGGAGTATATTTTTCTCTCTTGTTA
TTTACATTTTTTTACCTTTCAACAGAAAGACAATGGATTCCAATTGGACC
ATCATAACCTGATCTGGATAAATATATAATCGATCTTACCTCCTGATATC
TAACCCTCTTGAATGATTAGGGTGCAAGAATTATATTTTCAACTTAGGTT
TATTGTTTATTTCTTTTTAAGGTTCACAAGTCTATGAGGAACATTATGTG
GGCAGAAAGCTGCTTCAAGTTGCAAATGGATCCTCATCTGCCAACGAAAC
TGAAAAATGTACAGAACCAAGTATGTAAAATAGATTCCATTGTTTTTGAA
CACTTTTTCTTTTTTTAGATTTGAATCTAATTAAGCAAGTCTTAATAAGG
GTTTAATTGAATTTCAATTCTATTTTCATTCTATTTTTCAAAAGTTTTCT
TCGTACTAAACTTGGTACTGTCCCTCATTTGTTGATTTTCTTCATTGTGA
TTGTTTCAAGGTGTGAAAGAGTTTCCAAGTGATTTATTCACACAACAGCA
AAGAAGATATGGAGCTGTTATCCTCCACATACTCATGGTATGACTGTCAC
TTACTTATTCTAAACAGCCAAGAATGTCTACTGTTTGTTTCCAAAGTTTC
TTCTTCTCTCACCCTTGAGACATAATCATGATAATTCTCTTTTTAGATGA
CCTTTTGACTTCGTTAACCCTTCTTTAATTGAACCAGATTGAACACACGT
CGAACAAAGATAACATATCTAACGTGTTCTTATTTTTCTTTGCAGGCCAT
ATATATGTTTGCGGCATTAGCCTTTGTGTGTGATGATTACTTCATATCAG
CACTCGACAAAATTTGCCAGGTTTGTGGAAAAGTTGGTACATAATTTGGT
TATCACTTTAATGCTTTATGCAAGATATATATGCATTAATAAGATGGAGA
CTTTTTAAAACGACCTGACGTTATCTATCAAGTGCAAGTTTTATGTTTAT
TTTGTTGGTTTTCATCAAAGTTTTGTTGTCGTTGGTTTGACATCTTATTC
AACTACACTCTTTGACTCTTAAAGCAAACGGACCTCTCTTTCTTTACAGC
GTTTGGATTTATCAGAAGACGTGGCTGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037575XLOC_037575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059739-exon-scaffold_330-1575043694:335790..335981TCONS_00059739-exon-scaffold_330-1575043694:335790..335981Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1575043694:334212..334310TCONS_00059739-exon-scaffold_330-1575043694:334212..334310Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1575043694:333945..334021TCONS_00059739-exon-scaffold_330-1575043694:333945..334021Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1575043694:333662..333736TCONS_00059739-exon-scaffold_330-1575043694:333662..333736Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1575043694:333403..333432TCONS_00059739-exon-scaffold_330-1575043694:333403..333432Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1510915933:335790..335981TCONS_00059739-exon-scaffold_330-1510915933:335790..335981Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1510915933:334212..334310TCONS_00059739-exon-scaffold_330-1510915933:334212..334310Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1510915933:333945..334021TCONS_00059739-exon-scaffold_330-1510915933:333945..334021Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1510915933:333662..333736TCONS_00059739-exon-scaffold_330-1510915933:333662..333736Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1510915933:333403..333432TCONS_00059739-exon-scaffold_330-1510915933:333403..333432Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1491911889:335790..335981TCONS_00059739-exon-scaffold_330-1491911889:335790..335981Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1491911889:334212..334310TCONS_00059739-exon-scaffold_330-1491911889:334212..334310Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1491911889:333945..334021TCONS_00059739-exon-scaffold_330-1491911889:333945..334021Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1491911889:333662..333736TCONS_00059739-exon-scaffold_330-1491911889:333662..333736Clytia hemisphaericaexon
TCONS_00059739-exon-scaffold_330-1491911889:333403..333432TCONS_00059739-exon-scaffold_330-1491911889:333403..333432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:333403..335981 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.42908	0	0	0	0	3.46527	0	0	0	0	0	0	0	0	0	0.00243663	0	2.37831e-09	0	0	0.255132	0	0	0	5.96271e-05	0	0
Blast
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BLAST of TCONS_00059739 vs. Swiss-Prot (Human)
Match: NCKX4 (Sodium/potassium/calcium exchanger 4 OS=Homo sapiens GN=SLC24A4 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 3.034e-29
Identity = 53/116 (45.69%), Postives = 80/116 (68.97%), Query Frame = 3 
Query:  138 LVAVVFTSHQFLNSFGQ----TGSQVYEEHYVGRKLLQVANGSSSANETEKCTEPSVKEFPSDLFTQQQRRYGAVILHILMAIYMFAALAFVCDDYFISALDKICQRLDLSEDVAG 473
            ++A+V  +     S G        +V  + +  RKL+   NG+ +A   + CT+P++ EFP+DLF+ ++R++GAV+LHIL A+YMF ALA VCDD+F+ +L+KIC+RL LSEDVAG
Sbjct:   29 VLALVCCASGLFGSLGHKTASASKRVLPDTWRNRKLMAPVNGTQTA---KNCTDPAIHEFPTDLFSNKERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICERLHLSEDVAG 141
The following BLAST results are available for this feature:
BLAST of TCONS_00059739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX43.034e-2945.69Sodium/potassium/calcium exchanger 4 OS=Homo sapie... [more]
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