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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059727 ID=TCONS_00059727|Name=TCONS_00059727|organism=Clytia hemisphaerica|type=transcript|length=2701bpRun BLAST on NCBI protein sequence of TCONS_00059727-protein >TCONS_00059727-protein ID=TCONS_00059727-protein|Name=TCONS_00059727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=655bp MAVESNTRSSFSFDGNYFALLSIDNRLRIWDVASGKLLREYSSTDDVESTRun BLAST on NCBI transcript from alignment at scaffold_330:249440..275848- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059727 ID=TCONS_00059727|Name=TCONS_00059727|organism=Clytia hemisphaerica|type=transcript|length=26409bp|location=Sequence derived from alignment at scaffold_330:249440..275848- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_330:249440..275848- >TCONS_00059727 ID=TCONS_00059727|Name=TCONS_00059727|organism=Clytia hemisphaerica|type=CDS|length=33456bp|location=Sequence derived from alignment at scaffold_330:249440..275848- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059727 vs. Swiss-Prot (Human)
Match: WDR43 (WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3) HSP 1 Score: 248.44 bits (633), Expect = 2.127e-70 Identity = 178/563 (31.62%), Postives = 291/563 (51.69%), Query Frame = 1
Query: 217 YFALLSIDNRLRIWDVASGKLLREYSSTDDVESTCTCLCWTR---NLDPXXXXXXXXXXXXXXXXQLSSLLIGYRNGGLVAYNSNSDQLEQNY-RDGHSKKVNCIXXXXXXXXXXXXXXXKHIVEWNIHTKELISKWKAGKSAINRVAVTPSGKNLLSAGMVIKLWDLETKKEIMKFDGHASPVSILQFSGYRSPNKTSDDDD--GCYFLSGSLEDRQISSWQINHSQPDKSTVASFVTNEIPLYLSVAL-EKDSKPVKMVVGCQNGTVHFYEFQMNGKVQRXXXXXXXXXXXXX-DGNKNIPAN---LYGGYVENLQGDLTTKIANGSSVQMDFNSFNFTEAGKEESITKDLSSNLFMKEHSKISKKPVELAQIRGKQHVIGSTFTAPAKIPKLDINDNLQDLQKT---DMSMVERLKNL-----KDNEFGQMTNAGSISVLLTQGLHTKDTKLLDEVISKQYHVNVIKNTLKRMSASDAVKLLILIVDQIHHQPKLMVFNNMMAWTKNILAIHLSSILLMSDVGDATGKLFNLLKAQQETYPALFSFQGKVDLLISQVSKT 1848
YFAL S D LR+W+ A+ +L +EY + + TCTCL W + +++ + G Q L +G G ++ Y++ +L GH +VNCI ++ + YSCSDDKHIVEWN+ T ++ KWK S+++ + ++P GK LLSAG IKLW LETK+ F GHA+PVS L F+ R PN++ D G YFLSG++ DR ++ WQ+ +KS V SF + P+Y+ + L E +PVK+ V C++G VH +E +NG ++PL + ++ ++ G K+ P L G+ + ++ + GS Q + +D+S+ K + I+K + K V G A P + ++ +K+ ++S+ ERL + K + TN S VLLTQGL + D ++L++V+ + +VN+IK T+ RM + LL + ++ P V M+ W K +L +H S + + D+ G L+ L++++ +T+ L GK+ LLI+QV+ +
Sbjct: 28 YFALASTDGHLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKLISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFEHILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSD---KMSLLLVYGSWFQPTIERVALNSREPHMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPPQTEQVESKRKSGGNEVSIEERLGAMDIDTHKKGKEDLQTN--SFPVLLTQGLESNDFEMLNKVLQTR-NVNLIKKTVLRMPLHTIIPLLQELTKRLQGHPNSAVL--MVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMESRVKTFQKLSHLHGKLILLITQVTAS 582 The following BLAST results are available for this feature:
BLAST of TCONS_00059727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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