TCONS_00059720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059720
Unique NameTCONS_00059720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1121

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059720 ID=TCONS_00059720|Name=TCONS_00059720|organism=Clytia hemisphaerica|type=transcript|length=1121bp
TTCAAAACGTGAGTGTTCAGTGTTTTTATGAGCTTTCAGACTTTAAAAAC
GCGCCTAGCCTTGATTAGACATCTTAAAATTGTTCACACTTTGGCTTTTA
ATGCGCGTATGAGCTCAGATTAAGTTCTACGTAATCCCCCTGATTTTACT
TTTATCATTCTTTCAAGTCATTTTATTTCgccatttattttttatataaa
ttcgcatcaatgttttgaaaatatttcagttaaGTGAAAATCGTTGAAAG
TACGTAAGTTTTGTGTACTTGTGGTTTaatattttgctgttaaaaGATGA
CTGAATCATTCACAGACGAACAAGTCGATGATTTCCGCGAAGCCTTTTCA
CTATTCGATAAAGACGGAGATGGCACCATCACGACTGGAGAATTAGGGAT
CGTTATGCGGAGCCTGGGCCAATCACCCACAGAAGCAGAACTACAAGACA
TGATTAATGAAGTCGATATTGATGGGAATGGGACGATCGATTTTTTGGAG
TTTCTGGGAATGATGGCACGGAAGATGCGTTCAACAGATGCAGAAGAAGA
AATTAAAGAAGCGTTCCGTGTCTTCGATAAAGATGGTAATGGTTACATCA
GTTCAGTGGAATTACGTCATATTATGACGACATTGGGTGAGAAATTGACC
AATGAGGAAGTAGAAGAGATGATCAAGGAAGCAGATATGGATGGTGATGG
CACCATCAATTATGAAGAATTCGTCAAGATGATAATGCAAAAATGAGAAG
AGTCTGGATGAGAATGATTCTTGGAGAGcataatattatttttatacTTG
TACATAAGAGAATTGGTATCGCTCTACCGTTTCCATGGAAACAAATGTTG
TTTAACTGAGGGGTATCAATATTGATAATTTGGCTGCTTGAATGCTgctg
aaagaaaaagaagaacgtTCGAAATGAGTGAAAATCGAAACTAACTGAAA
AAAGACATTTATAGGAAAAACTCAAATTCACTGTGATATTTGACATGAGT
CAATTATTCTAAACAGAATATATTGGTTTTGAATTTTGTAACATTATTat
cgaaaactttttgaattatgcttaaaatatttttaacttattTAGTGAAG
ATTAGTAAAAGATAAAAACCC
Run BLAST on NCBI

transcript from alignment at scaffold_330:87017..91080-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059720 ID=TCONS_00059720|Name=TCONS_00059720|organism=Clytia hemisphaerica|type=transcript|length=4064bp|location=Sequence derived from alignment at scaffold_330:87017..91080- (Clytia hemisphaerica)
TTCAAAACGTGAGTGTTCAGTGTTTTTATGAGCTTTCAGACTTTAAAAAC
GCGCCTAGCCTTGATTAGACATCTTAAAATTGTTCACACTTTGGCTTTTA
ATGCGCGTATGAGCTCAGATTAAGTTCTACGTAATCCCCCTGATTTTACT
TTTATCATTCTTTCAAGTCATTTTATTTCGCCATTTATTTTTTATATAAA
TTCGCATCAATGTTTTGAAAATATTTCAGTTAAGTGAAAATCGTTGAAAG
TACGTAAGTTTTGTGTACTTGTGGTTTAATATTTTGCTGTTAAAAGATGG
TAAGCTTGCATTTTTTTCAAGAATCTAAAAATTTCAAACACTTAAACTTT
TTGAAAGTGTTTTTTTTCGAAAAATGTGTTTTTATTTATCTAGGTCTTGG
AATTTTTTGCTTTTTTGTCAATTTATTTTTCCTACTTTTGTTAGATATTC
TTTAAATAACTTTTGGTGCTACCGTGACACGAAGACATCGCATCAACGCC
ACCAACAACCGTGCCTTTCAACAGCCGAGCGATGTAAGCTTTCGACCAAG
TAAAACAGTTATTACCACGAAAGGAAAAATTAGATTTTCTCGGACCCGTT
AAAATAAGACGCTTGTAAAACTCTGGAATTTCATTTCTCCCGAGTGGGAA
GTCATTGAACGGATTTTTAAAACAGAGTCAGTATAGTAAAGGAGGGAATT
GAACAAAACATTAAAGCATTCTATAGGATGAATGATGAGAATATCAAGTC
CAACCATCTGTTATCATGGCTCTCGGCAGGCTATCAAAACATGACAAAAA
TATAGTTTAAAAACTTTAGTAGGTCTAAAAAGAAGTAGAGAAAAGGGGTC
GAGAAAGGTAGATTTTCCTCTAGTAGAGTGAGGACACAGTGTACATGCTT
GTGGTAGCTTTAGGGTAGTTTAGAGAGAGTGATGTTTAATTACCTGTGGG
CATCTTTGCGCTCTCTCGCATTGTCATCAGGAGATGATGGCGATTTGGAA
AGTAGTTCAGATTCCAATGAAAGTTATTTCTTCCCAACAAAATTCCGAAG
AGGAGTCTTTCGAAGTTTTAAAGAACACATGATACCAGAGGTACAGGATA
GTCTGAGAGATCACAGATTTTAACAAAACCGAAGGTAGCATAGAAGCTAT
AAGAGCACGAAACCGTTAAGGAATGCCAGGATAGTGGAAGTTGAAGAAAA
GCTGGTTTGAAAGTCATGTACATGATTTATGGTGGTCAAAGAAAACGACA
CACCTCTTTGATCAATATCTTGGCCGAACTAACGGCTTTCTTCAAGATCA
AAACAAAGGCTTTTTATTGGCCAAATATGTAGATGTGCTGTAGATGCTAG
AGAAAATAGTCGAACGAAGATGTCGAGTGTAGTTTTGGTTAAGGAAAGAA
TAGATTTTCGAAATAAGAAGGTTTCTTGAGGGAACATGTTTCTACAATCC
TCAACCTTTTTCGGAATGGTAATGAGGCTGTAATATTGGAAAAGAGCTTT
CTATATACCATTTTTTTTTAGACTGAATCATTCACAGACGAACAAGTCGA
TGGTAAGAACACCTTTACATCTATCTAATATTAGCCTCGACAAAAGTGGG
AAAGAATGTAATTTTCGAGAAGTTAGACTTTCTTCTCTTTTTCCATTTTT
ACCCTCAACCTCTTCATCCTTACAATTCTTACAGTTGTGCCTTAACCTCT
GTTTATCACAATCATAAAGCAATGTAAGACTAAAAAATGTGAGAACCAAG
ACATTTTCCAATTAATCTATATCATTGATTAAAGGAACAGTAGACAAAAG
CTCCTCGATCATTGCCTTCTAATCACCAGTAAGATCAAAATCCAAAGAAA
ACCATCATAGGTCGTATCTAAAACCACACGGACTATGTTTAAAGTCAGGA
TTTGAAGGCTTTCATACTTTGAGCTATAGGAGGAAAGTGAATGAAACTTT
TCGATGGAGGATGAGTAGAAACATAAATTTCACCTTCAATTGACAGATTT
CCGCGAAGCCTTTTCACTATTCGATAAAGACGGAGATGGCACCATCACGA
CTGGAGAATTAGGGATCGTTATGCGGAGCCTGGGCCAATCACCCACAGAA
GCAGAACTACAAGACATGATTAATGAAGTCGATATTGATGGTAGGTTGAT
TCTAAGCATCATTACGTAAAGCTTTGGTTTGAACCATTTTGGGACCATTT
TTCAAATTGAAAAGGATTTGTTATACAGTCTCATTCATGAATAAATTCAT
GATGTAATCTGAAAGCAACCAGTTGATGGTTGAATATCAATTAGACGTTT
TAGGGCCTGGTGAAATACAGTGAAAAAGACATTCTCACAAAAAGAAGAAA
GCAGAATTTTTTGAAGTGAATTTCAAAATCGAAAATTTCACTAACACCTC
CTATCACAATCCTTTATAGGGAATGGGACGATCGATTTTTTGGAGTTTCT
GGGAATGATGGCACGGAAGATGCGTTCAACAGATGCAGAAGAAGAAATTA
AAGAAGCGTTCCGTGTCTTCGATAAAGATGGTGAGTTGGATGGAAGCTTG
TAGAAAGTTTCCTTATGACTCGGTTGACTGATTGATCGTCTCCATAGACC
CTTTTTCAGAGACATACTAGGTTTTTCACAAAGTCTATTTTAATTGACTC
TGTTGTATTTTCAAGGTTTTCCAGGGACAATACACTAGACATAAAACCGA
CACAGACTTTCGTCTGGATCGCCAAAACTTCTTCTCCTCGTACGAAATAT
TTATTTGTTATTCCTAACAGGTAATGGTTACATCAGTTCAGTGGAATTAC
GTCATATTATGACGACATTGGGTGAGAAATTGACCAATGAGGAAGTAGAA
GAGATGATCAAGGAAGCAGATATGGATGGTGATGGCACCATCAATTATGA
AGGTGAGATTTCATAATTGTTCCTAATCTGGAAAAACGTTCATACAATAT
CGTTTAAAGTCGTTCCAAAACAAAATAATCTATTGTGTTGGTTCATCTTT
TGGAGTGACATCATTTCTAACCAACACCTATTCGTCTCGGAGATAAATAG
AGCGCAAAGACAGAGATGGTTAATAGAAAGTAAGTAAGTCTGCGACCGCA
CTTACTTCGATAGCTATTCACCCGAAGGTAGGGGAAGGCGCCACCCTTTC
TCCCTGGATTGCTCCACTTACCCTTGATCCTTCACTTAGTAGCCGAGCAT
CAAGCAGAGAGGCATCAAGTACCATTTTGGAAATCTTTGGTATGACCCGG
CTGGGGGTGAACCCACAACCATGCTTTACTACTCAGACTACTGCACTACG
GTCACAAGAGATAGATATGGAATTGATGAACAAGTTATATCGGCAAGGCC
TGTTAATCTCTAAGACGACCAAAGAAAGAAATGTCTACATTTATTACATT
GAATATGCAAGATGTTAGAAGTACCAAACAATATCCAAGTATTGATAAAA
AGGGTTCTTACTAGACAGATTTTAATAATTCCGATATCACGTTTTAACAC
TCCGAGTATCTTTCTTTTTTTACTGGGAGAAGTATCTTGGGGGCGGCTCC
CCTTAAAATCATAAGGTTGACAAATGCTATGAACTTAAAATTTTGAAAAG
TGGCAGATATGGACAATTGAAGGTGATTCTGTTAATCTCTATGTGTTCAT
TCTCTTTAAGAATTCGTCAAGATGATAATGCAAAAATGAGAAGAGTCTGG
ATGAGAATGATTCTTGGAGAGCATAATATTATTTTTATACTTGTACATAA
GAGAATTGGTATCGCTCTACCGTTTCCATGGAAACAAATGTTGTTTAACT
GAGGGGTATCAATATTGATAATTTGGCTGCTTGAATGCTGCTGAAAGAAA
AAGAAGAACGTTCGAAATGAGTGAAAATCGAAACTAACTGAAAAAAGACA
TTTATAGGAAAAACTCAAATTCACTGTGATATTTGACATGAGTCAATTAT
TCTAAACAGAATATATTGGTTTTGAATTTTGTAACATTATTATCGAAAAC
TTTTTGAATTATGCTTAAAATATTTTTAACTTATTTAGTGAAGATTAGTA
AAAGATAAAAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037566XLOC_037566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059720-exon-scaffold_330-1575043694:90782..91080TCONS_00059720-exon-scaffold_330-1575043694:90782..91080Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:89529..89559TCONS_00059720-exon-scaffold_330-1575043694:89529..89559Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:88941..89084TCONS_00059720-exon-scaffold_330-1575043694:88941..89084Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:88551..88661TCONS_00059720-exon-scaffold_330-1575043694:88551..88661Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:88179..88310TCONS_00059720-exon-scaffold_330-1575043694:88179..88310Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:87017..87420TCONS_00059720-exon-scaffold_330-1575043694:87017..87420Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:90782..91080TCONS_00059720-exon-scaffold_330-1510915933:90782..91080Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:89529..89559TCONS_00059720-exon-scaffold_330-1510915933:89529..89559Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:88941..89084TCONS_00059720-exon-scaffold_330-1510915933:88941..89084Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:88551..88661TCONS_00059720-exon-scaffold_330-1510915933:88551..88661Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:88179..88310TCONS_00059720-exon-scaffold_330-1510915933:88179..88310Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:87017..87420TCONS_00059720-exon-scaffold_330-1510915933:87017..87420Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:90782..91080TCONS_00059720-exon-scaffold_330-1491911889:90782..91080Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:89529..89559TCONS_00059720-exon-scaffold_330-1491911889:89529..89559Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:88941..89084TCONS_00059720-exon-scaffold_330-1491911889:88941..89084Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:88551..88661TCONS_00059720-exon-scaffold_330-1491911889:88551..88661Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:88179..88310TCONS_00059720-exon-scaffold_330-1491911889:88179..88310Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:87017..87420TCONS_00059720-exon-scaffold_330-1491911889:87017..87420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:87017..91080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.10492	0.0829095	0.100027	0.046822	0	0.0406047	0	0.0259079	0	0.0806045	0.0441786	0	57.7268	57.4442	0	0	54.0145	54.9326	24.3051	20.5353	11.044	19.9225	0	0	0	0
Blast
[Close]
BLAST of TCONS_00059720 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.124e-78
Identity = 116/149 (77.85%), Postives = 134/149 (89.93%), Query Frame = 3 
Query:  297 MTESFTDEQVDDFREAFSLFDKDGDGTITTGELGIVMRSLGQSPTEAELQDMINEVDIDGNGTIDFLEFLGMMARKMRSTDAEEEIKEAFRVFDKDGNGYISSVELRHIMTTLGEKLTNEEVEEMIKEADMDGDGTINYEEFVKMIMQK 743
            M +  T+EQ+ +F+EAFSLFDKDGDGTITT ELG VMRSLGQ+PTEAELQDMINEVD DGNGTIDF EFL MMARKM+ TD+EEEI+EAFRVFDKDGNGYIS+ ELRH+MT LGEKLT+EEV+EMI+EAD+DGDG +NYEEFV+M+  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
BLAST of TCONS_00059720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM32.124e-7877.85Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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