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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059720 ID=TCONS_00059720|Name=TCONS_00059720|organism=Clytia hemisphaerica|type=transcript|length=1121bp TTCAAAACGTGAGTGTTCAGTGTTTTTATGAGCTTTCAGACTTTAAAAAC GCGCCTAGCCTTGATTAGACATCTTAAAATTGTTCACACTTTGGCTTTTA ATGCGCGTATGAGCTCAGATTAAGTTCTACGTAATCCCCCTGATTTTACT TTTATCATTCTTTCAAGTCATTTTATTTCgccatttattttttatataaa ttcgcatcaatgttttgaaaatatttcagttaaGTGAAAATCGTTGAAAG TACGTAAGTTTTGTGTACTTGTGGTTTaatattttgctgttaaaaGATGA CTGAATCATTCACAGACGAACAAGTCGATGATTTCCGCGAAGCCTTTTCA CTATTCGATAAAGACGGAGATGGCACCATCACGACTGGAGAATTAGGGAT CGTTATGCGGAGCCTGGGCCAATCACCCACAGAAGCAGAACTACAAGACA TGATTAATGAAGTCGATATTGATGGGAATGGGACGATCGATTTTTTGGAG TTTCTGGGAATGATGGCACGGAAGATGCGTTCAACAGATGCAGAAGAAGA AATTAAAGAAGCGTTCCGTGTCTTCGATAAAGATGGTAATGGTTACATCA GTTCAGTGGAATTACGTCATATTATGACGACATTGGGTGAGAAATTGACC AATGAGGAAGTAGAAGAGATGATCAAGGAAGCAGATATGGATGGTGATGG CACCATCAATTATGAAGAATTCGTCAAGATGATAATGCAAAAATGAGAAG AGTCTGGATGAGAATGATTCTTGGAGAGcataatattatttttatacTTG TACATAAGAGAATTGGTATCGCTCTACCGTTTCCATGGAAACAAATGTTG TTTAACTGAGGGGTATCAATATTGATAATTTGGCTGCTTGAATGCTgctg aaagaaaaagaagaacgtTCGAAATGAGTGAAAATCGAAACTAACTGAAA AAAGACATTTATAGGAAAAACTCAAATTCACTGTGATATTTGACATGAGT CAATTATTCTAAACAGAATATATTGGTTTTGAATTTTGTAACATTATTat cgaaaactttttgaattatgcttaaaatatttttaacttattTAGTGAAG ATTAGTAAAAGATAAAAACCC Run BLAST on NCBI transcript from alignment at scaffold_330:87017..91080- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059720 ID=TCONS_00059720|Name=TCONS_00059720|organism=Clytia hemisphaerica|type=transcript|length=4064bp|location=Sequence derived from alignment at scaffold_330:87017..91080- (Clytia hemisphaerica) TTCAAAACGTGAGTGTTCAGTGTTTTTATGAGCTTTCAGACTTTAAAAAC
GCGCCTAGCCTTGATTAGACATCTTAAAATTGTTCACACTTTGGCTTTTA
ATGCGCGTATGAGCTCAGATTAAGTTCTACGTAATCCCCCTGATTTTACT
TTTATCATTCTTTCAAGTCATTTTATTTCGCCATTTATTTTTTATATAAA
TTCGCATCAATGTTTTGAAAATATTTCAGTTAAGTGAAAATCGTTGAAAG
TACGTAAGTTTTGTGTACTTGTGGTTTAATATTTTGCTGTTAAAAGATGG
TAAGCTTGCATTTTTTTCAAGAATCTAAAAATTTCAAACACTTAAACTTT
TTGAAAGTGTTTTTTTTCGAAAAATGTGTTTTTATTTATCTAGGTCTTGG
AATTTTTTGCTTTTTTGTCAATTTATTTTTCCTACTTTTGTTAGATATTC
TTTAAATAACTTTTGGTGCTACCGTGACACGAAGACATCGCATCAACGCC
ACCAACAACCGTGCCTTTCAACAGCCGAGCGATGTAAGCTTTCGACCAAG
TAAAACAGTTATTACCACGAAAGGAAAAATTAGATTTTCTCGGACCCGTT
AAAATAAGACGCTTGTAAAACTCTGGAATTTCATTTCTCCCGAGTGGGAA
GTCATTGAACGGATTTTTAAAACAGAGTCAGTATAGTAAAGGAGGGAATT
GAACAAAACATTAAAGCATTCTATAGGATGAATGATGAGAATATCAAGTC
CAACCATCTGTTATCATGGCTCTCGGCAGGCTATCAAAACATGACAAAAA
TATAGTTTAAAAACTTTAGTAGGTCTAAAAAGAAGTAGAGAAAAGGGGTC
GAGAAAGGTAGATTTTCCTCTAGTAGAGTGAGGACACAGTGTACATGCTT
GTGGTAGCTTTAGGGTAGTTTAGAGAGAGTGATGTTTAATTACCTGTGGG
CATCTTTGCGCTCTCTCGCATTGTCATCAGGAGATGATGGCGATTTGGAA
AGTAGTTCAGATTCCAATGAAAGTTATTTCTTCCCAACAAAATTCCGAAG
AGGAGTCTTTCGAAGTTTTAAAGAACACATGATACCAGAGGTACAGGATA
GTCTGAGAGATCACAGATTTTAACAAAACCGAAGGTAGCATAGAAGCTAT
AAGAGCACGAAACCGTTAAGGAATGCCAGGATAGTGGAAGTTGAAGAAAA
GCTGGTTTGAAAGTCATGTACATGATTTATGGTGGTCAAAGAAAACGACA
CACCTCTTTGATCAATATCTTGGCCGAACTAACGGCTTTCTTCAAGATCA
AAACAAAGGCTTTTTATTGGCCAAATATGTAGATGTGCTGTAGATGCTAG
AGAAAATAGTCGAACGAAGATGTCGAGTGTAGTTTTGGTTAAGGAAAGAA
TAGATTTTCGAAATAAGAAGGTTTCTTGAGGGAACATGTTTCTACAATCC
TCAACCTTTTTCGGAATGGTAATGAGGCTGTAATATTGGAAAAGAGCTTT
CTATATACCATTTTTTTTTAGACTGAATCATTCACAGACGAACAAGTCGA
TGGTAAGAACACCTTTACATCTATCTAATATTAGCCTCGACAAAAGTGGG
AAAGAATGTAATTTTCGAGAAGTTAGACTTTCTTCTCTTTTTCCATTTTT
ACCCTCAACCTCTTCATCCTTACAATTCTTACAGTTGTGCCTTAACCTCT
GTTTATCACAATCATAAAGCAATGTAAGACTAAAAAATGTGAGAACCAAG
ACATTTTCCAATTAATCTATATCATTGATTAAAGGAACAGTAGACAAAAG
CTCCTCGATCATTGCCTTCTAATCACCAGTAAGATCAAAATCCAAAGAAA
ACCATCATAGGTCGTATCTAAAACCACACGGACTATGTTTAAAGTCAGGA
TTTGAAGGCTTTCATACTTTGAGCTATAGGAGGAAAGTGAATGAAACTTT
TCGATGGAGGATGAGTAGAAACATAAATTTCACCTTCAATTGACAGATTT
CCGCGAAGCCTTTTCACTATTCGATAAAGACGGAGATGGCACCATCACGA
CTGGAGAATTAGGGATCGTTATGCGGAGCCTGGGCCAATCACCCACAGAA
GCAGAACTACAAGACATGATTAATGAAGTCGATATTGATGGTAGGTTGAT
TCTAAGCATCATTACGTAAAGCTTTGGTTTGAACCATTTTGGGACCATTT
TTCAAATTGAAAAGGATTTGTTATACAGTCTCATTCATGAATAAATTCAT
GATGTAATCTGAAAGCAACCAGTTGATGGTTGAATATCAATTAGACGTTT
TAGGGCCTGGTGAAATACAGTGAAAAAGACATTCTCACAAAAAGAAGAAA
GCAGAATTTTTTGAAGTGAATTTCAAAATCGAAAATTTCACTAACACCTC
CTATCACAATCCTTTATAGGGAATGGGACGATCGATTTTTTGGAGTTTCT
GGGAATGATGGCACGGAAGATGCGTTCAACAGATGCAGAAGAAGAAATTA
AAGAAGCGTTCCGTGTCTTCGATAAAGATGGTGAGTTGGATGGAAGCTTG
TAGAAAGTTTCCTTATGACTCGGTTGACTGATTGATCGTCTCCATAGACC
CTTTTTCAGAGACATACTAGGTTTTTCACAAAGTCTATTTTAATTGACTC
TGTTGTATTTTCAAGGTTTTCCAGGGACAATACACTAGACATAAAACCGA
CACAGACTTTCGTCTGGATCGCCAAAACTTCTTCTCCTCGTACGAAATAT
TTATTTGTTATTCCTAACAGGTAATGGTTACATCAGTTCAGTGGAATTAC
GTCATATTATGACGACATTGGGTGAGAAATTGACCAATGAGGAAGTAGAA
GAGATGATCAAGGAAGCAGATATGGATGGTGATGGCACCATCAATTATGA
AGGTGAGATTTCATAATTGTTCCTAATCTGGAAAAACGTTCATACAATAT
CGTTTAAAGTCGTTCCAAAACAAAATAATCTATTGTGTTGGTTCATCTTT
TGGAGTGACATCATTTCTAACCAACACCTATTCGTCTCGGAGATAAATAG
AGCGCAAAGACAGAGATGGTTAATAGAAAGTAAGTAAGTCTGCGACCGCA
CTTACTTCGATAGCTATTCACCCGAAGGTAGGGGAAGGCGCCACCCTTTC
TCCCTGGATTGCTCCACTTACCCTTGATCCTTCACTTAGTAGCCGAGCAT
CAAGCAGAGAGGCATCAAGTACCATTTTGGAAATCTTTGGTATGACCCGG
CTGGGGGTGAACCCACAACCATGCTTTACTACTCAGACTACTGCACTACG
GTCACAAGAGATAGATATGGAATTGATGAACAAGTTATATCGGCAAGGCC
TGTTAATCTCTAAGACGACCAAAGAAAGAAATGTCTACATTTATTACATT
GAATATGCAAGATGTTAGAAGTACCAAACAATATCCAAGTATTGATAAAA
AGGGTTCTTACTAGACAGATTTTAATAATTCCGATATCACGTTTTAACAC
TCCGAGTATCTTTCTTTTTTTACTGGGAGAAGTATCTTGGGGGCGGCTCC
CCTTAAAATCATAAGGTTGACAAATGCTATGAACTTAAAATTTTGAAAAG
TGGCAGATATGGACAATTGAAGGTGATTCTGTTAATCTCTATGTGTTCAT
TCTCTTTAAGAATTCGTCAAGATGATAATGCAAAAATGAGAAGAGTCTGG
ATGAGAATGATTCTTGGAGAGCATAATATTATTTTTATACTTGTACATAA
GAGAATTGGTATCGCTCTACCGTTTCCATGGAAACAAATGTTGTTTAACT
GAGGGGTATCAATATTGATAATTTGGCTGCTTGAATGCTGCTGAAAGAAA
AAGAAGAACGTTCGAAATGAGTGAAAATCGAAACTAACTGAAAAAAGACA
TTTATAGGAAAAACTCAAATTCACTGTGATATTTGACATGAGTCAATTAT
TCTAAACAGAATATATTGGTTTTGAATTTTGTAACATTATTATCGAAAAC
TTTTTGAATTATGCTTAAAATATTTTTAACTTATTTAGTGAAGATTAGTA
AAAGATAAAAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059720-exon-scaffold_330-1575043694:90782..91080 | TCONS_00059720-exon-scaffold_330-1575043694:90782..91080 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1575043694:89529..89559 | TCONS_00059720-exon-scaffold_330-1575043694:89529..89559 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1575043694:88941..89084 | TCONS_00059720-exon-scaffold_330-1575043694:88941..89084 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1575043694:88551..88661 | TCONS_00059720-exon-scaffold_330-1575043694:88551..88661 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1575043694:88179..88310 | TCONS_00059720-exon-scaffold_330-1575043694:88179..88310 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1575043694:87017..87420 | TCONS_00059720-exon-scaffold_330-1575043694:87017..87420 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1510915933:90782..91080 | TCONS_00059720-exon-scaffold_330-1510915933:90782..91080 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1510915933:89529..89559 | TCONS_00059720-exon-scaffold_330-1510915933:89529..89559 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1510915933:88941..89084 | TCONS_00059720-exon-scaffold_330-1510915933:88941..89084 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1510915933:88551..88661 | TCONS_00059720-exon-scaffold_330-1510915933:88551..88661 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1510915933:88179..88310 | TCONS_00059720-exon-scaffold_330-1510915933:88179..88310 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1510915933:87017..87420 | TCONS_00059720-exon-scaffold_330-1510915933:87017..87420 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1491911889:90782..91080 | TCONS_00059720-exon-scaffold_330-1491911889:90782..91080 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1491911889:89529..89559 | TCONS_00059720-exon-scaffold_330-1491911889:89529..89559 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1491911889:88941..89084 | TCONS_00059720-exon-scaffold_330-1491911889:88941..89084 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1491911889:88551..88661 | TCONS_00059720-exon-scaffold_330-1491911889:88551..88661 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1491911889:88179..88310 | TCONS_00059720-exon-scaffold_330-1491911889:88179..88310 | Clytia hemisphaerica | exon |
TCONS_00059720-exon-scaffold_330-1491911889:87017..87420 | TCONS_00059720-exon-scaffold_330-1491911889:87017..87420 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_330 | supercontig | scaffold_330:87017..91080 - |
Blast
BLAST of TCONS_00059720 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 2.124e-78 Identity = 116/149 (77.85%), Postives = 134/149 (89.93%), Query Frame = 3
Query: 297 MTESFTDEQVDDFREAFSLFDKDGDGTITTGELGIVMRSLGQSPTEAELQDMINEVDIDGNGTIDFLEFLGMMARKMRSTDAEEEIKEAFRVFDKDGNGYISSVELRHIMTTLGEKLTNEEVEEMIKEADMDGDGTINYEEFVKMIMQK 743
M + T+EQ+ +F+EAFSLFDKDGDGTITT ELG VMRSLGQ+PTEAELQDMINEVD DGNGTIDF EFL MMARKM+ TD+EEEI+EAFRVFDKDGNGYIS+ ELRH+MT LGEKLT+EEV+EMI+EAD+DGDG +NYEEFV+M+ K
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
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