TCONS_00059720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059720
Unique NameTCONS_00059720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1121

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059720 ID=TCONS_00059720|Name=TCONS_00059720|organism=Clytia hemisphaerica|type=transcript|length=1121bp
TTCAAAACGTGAGTGTTCAGTGTTTTTATGAGCTTTCAGACTTTAAAAAC
GCGCCTAGCCTTGATTAGACATCTTAAAATTGTTCACACTTTGGCTTTTA
ATGCGCGTATGAGCTCAGATTAAGTTCTACGTAATCCCCCTGATTTTACT
TTTATCATTCTTTCAAGTCATTTTATTTCgccatttattttttatataaa
ttcgcatcaatgttttgaaaatatttcagttaaGTGAAAATCGTTGAAAG
TACGTAAGTTTTGTGTACTTGTGGTTTaatattttgctgttaaaaGATGA
CTGAATCATTCACAGACGAACAAGTCGATGATTTCCGCGAAGCCTTTTCA
CTATTCGATAAAGACGGAGATGGCACCATCACGACTGGAGAATTAGGGAT
CGTTATGCGGAGCCTGGGCCAATCACCCACAGAAGCAGAACTACAAGACA
TGATTAATGAAGTCGATATTGATGGGAATGGGACGATCGATTTTTTGGAG
TTTCTGGGAATGATGGCACGGAAGATGCGTTCAACAGATGCAGAAGAAGA
AATTAAAGAAGCGTTCCGTGTCTTCGATAAAGATGGTAATGGTTACATCA
GTTCAGTGGAATTACGTCATATTATGACGACATTGGGTGAGAAATTGACC
AATGAGGAAGTAGAAGAGATGATCAAGGAAGCAGATATGGATGGTGATGG
CACCATCAATTATGAAGAATTCGTCAAGATGATAATGCAAAAATGAGAAG
AGTCTGGATGAGAATGATTCTTGGAGAGcataatattatttttatacTTG
TACATAAGAGAATTGGTATCGCTCTACCGTTTCCATGGAAACAAATGTTG
TTTAACTGAGGGGTATCAATATTGATAATTTGGCTGCTTGAATGCTgctg
aaagaaaaagaagaacgtTCGAAATGAGTGAAAATCGAAACTAACTGAAA
AAAGACATTTATAGGAAAAACTCAAATTCACTGTGATATTTGACATGAGT
CAATTATTCTAAACAGAATATATTGGTTTTGAATTTTGTAACATTATTat
cgaaaactttttgaattatgcttaaaatatttttaacttattTAGTGAAG
ATTAGTAAAAGATAAAAACCC
Run BLAST on NCBI

transcript from alignment at scaffold_330:87017..91080-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059720 ID=TCONS_00059720|Name=TCONS_00059720|organism=Clytia hemisphaerica|type=transcript|length=4064bp|location=Sequence derived from alignment at scaffold_330:87017..91080- (Clytia hemisphaerica)
TTCAAAACGTGAGTGTTCAGTGTTTTTATGAGCTTTCAGACTTTAAAAAC GCGCCTAGCCTTGATTAGACATCTTAAAATTGTTCACACTTTGGCTTTTA ATGCGCGTATGAGCTCAGATTAAGTTCTACGTAATCCCCCTGATTTTACT TTTATCATTCTTTCAAGTCATTTTATTTCGCCATTTATTTTTTATATAAA TTCGCATCAATGTTTTGAAAATATTTCAGTTAAGTGAAAATCGTTGAAAG TACGTAAGTTTTGTGTACTTGTGGTTTAATATTTTGCTGTTAAAAGATGG TAAGCTTGCATTTTTTTCAAGAATCTAAAAATTTCAAACACTTAAACTTT TTGAAAGTGTTTTTTTTCGAAAAATGTGTTTTTATTTATCTAGGTCTTGG AATTTTTTGCTTTTTTGTCAATTTATTTTTCCTACTTTTGTTAGATATTC TTTAAATAACTTTTGGTGCTACCGTGACACGAAGACATCGCATCAACGCC ACCAACAACCGTGCCTTTCAACAGCCGAGCGATGTAAGCTTTCGACCAAG TAAAACAGTTATTACCACGAAAGGAAAAATTAGATTTTCTCGGACCCGTT AAAATAAGACGCTTGTAAAACTCTGGAATTTCATTTCTCCCGAGTGGGAA GTCATTGAACGGATTTTTAAAACAGAGTCAGTATAGTAAAGGAGGGAATT GAACAAAACATTAAAGCATTCTATAGGATGAATGATGAGAATATCAAGTC CAACCATCTGTTATCATGGCTCTCGGCAGGCTATCAAAACATGACAAAAA TATAGTTTAAAAACTTTAGTAGGTCTAAAAAGAAGTAGAGAAAAGGGGTC GAGAAAGGTAGATTTTCCTCTAGTAGAGTGAGGACACAGTGTACATGCTT GTGGTAGCTTTAGGGTAGTTTAGAGAGAGTGATGTTTAATTACCTGTGGG CATCTTTGCGCTCTCTCGCATTGTCATCAGGAGATGATGGCGATTTGGAA AGTAGTTCAGATTCCAATGAAAGTTATTTCTTCCCAACAAAATTCCGAAG AGGAGTCTTTCGAAGTTTTAAAGAACACATGATACCAGAGGTACAGGATA GTCTGAGAGATCACAGATTTTAACAAAACCGAAGGTAGCATAGAAGCTAT AAGAGCACGAAACCGTTAAGGAATGCCAGGATAGTGGAAGTTGAAGAAAA GCTGGTTTGAAAGTCATGTACATGATTTATGGTGGTCAAAGAAAACGACA CACCTCTTTGATCAATATCTTGGCCGAACTAACGGCTTTCTTCAAGATCA AAACAAAGGCTTTTTATTGGCCAAATATGTAGATGTGCTGTAGATGCTAG AGAAAATAGTCGAACGAAGATGTCGAGTGTAGTTTTGGTTAAGGAAAGAA TAGATTTTCGAAATAAGAAGGTTTCTTGAGGGAACATGTTTCTACAATCC TCAACCTTTTTCGGAATGGTAATGAGGCTGTAATATTGGAAAAGAGCTTT CTATATACCATTTTTTTTTAGACTGAATCATTCACAGACGAACAAGTCGA TGGTAAGAACACCTTTACATCTATCTAATATTAGCCTCGACAAAAGTGGG AAAGAATGTAATTTTCGAGAAGTTAGACTTTCTTCTCTTTTTCCATTTTT ACCCTCAACCTCTTCATCCTTACAATTCTTACAGTTGTGCCTTAACCTCT GTTTATCACAATCATAAAGCAATGTAAGACTAAAAAATGTGAGAACCAAG ACATTTTCCAATTAATCTATATCATTGATTAAAGGAACAGTAGACAAAAG CTCCTCGATCATTGCCTTCTAATCACCAGTAAGATCAAAATCCAAAGAAA ACCATCATAGGTCGTATCTAAAACCACACGGACTATGTTTAAAGTCAGGA TTTGAAGGCTTTCATACTTTGAGCTATAGGAGGAAAGTGAATGAAACTTT TCGATGGAGGATGAGTAGAAACATAAATTTCACCTTCAATTGACAGATTT CCGCGAAGCCTTTTCACTATTCGATAAAGACGGAGATGGCACCATCACGA CTGGAGAATTAGGGATCGTTATGCGGAGCCTGGGCCAATCACCCACAGAA GCAGAACTACAAGACATGATTAATGAAGTCGATATTGATGGTAGGTTGAT TCTAAGCATCATTACGTAAAGCTTTGGTTTGAACCATTTTGGGACCATTT TTCAAATTGAAAAGGATTTGTTATACAGTCTCATTCATGAATAAATTCAT GATGTAATCTGAAAGCAACCAGTTGATGGTTGAATATCAATTAGACGTTT TAGGGCCTGGTGAAATACAGTGAAAAAGACATTCTCACAAAAAGAAGAAA GCAGAATTTTTTGAAGTGAATTTCAAAATCGAAAATTTCACTAACACCTC CTATCACAATCCTTTATAGGGAATGGGACGATCGATTTTTTGGAGTTTCT GGGAATGATGGCACGGAAGATGCGTTCAACAGATGCAGAAGAAGAAATTA AAGAAGCGTTCCGTGTCTTCGATAAAGATGGTGAGTTGGATGGAAGCTTG TAGAAAGTTTCCTTATGACTCGGTTGACTGATTGATCGTCTCCATAGACC CTTTTTCAGAGACATACTAGGTTTTTCACAAAGTCTATTTTAATTGACTC TGTTGTATTTTCAAGGTTTTCCAGGGACAATACACTAGACATAAAACCGA CACAGACTTTCGTCTGGATCGCCAAAACTTCTTCTCCTCGTACGAAATAT TTATTTGTTATTCCTAACAGGTAATGGTTACATCAGTTCAGTGGAATTAC GTCATATTATGACGACATTGGGTGAGAAATTGACCAATGAGGAAGTAGAA GAGATGATCAAGGAAGCAGATATGGATGGTGATGGCACCATCAATTATGA AGGTGAGATTTCATAATTGTTCCTAATCTGGAAAAACGTTCATACAATAT CGTTTAAAGTCGTTCCAAAACAAAATAATCTATTGTGTTGGTTCATCTTT TGGAGTGACATCATTTCTAACCAACACCTATTCGTCTCGGAGATAAATAG AGCGCAAAGACAGAGATGGTTAATAGAAAGTAAGTAAGTCTGCGACCGCA CTTACTTCGATAGCTATTCACCCGAAGGTAGGGGAAGGCGCCACCCTTTC TCCCTGGATTGCTCCACTTACCCTTGATCCTTCACTTAGTAGCCGAGCAT CAAGCAGAGAGGCATCAAGTACCATTTTGGAAATCTTTGGTATGACCCGG CTGGGGGTGAACCCACAACCATGCTTTACTACTCAGACTACTGCACTACG GTCACAAGAGATAGATATGGAATTGATGAACAAGTTATATCGGCAAGGCC TGTTAATCTCTAAGACGACCAAAGAAAGAAATGTCTACATTTATTACATT GAATATGCAAGATGTTAGAAGTACCAAACAATATCCAAGTATTGATAAAA AGGGTTCTTACTAGACAGATTTTAATAATTCCGATATCACGTTTTAACAC TCCGAGTATCTTTCTTTTTTTACTGGGAGAAGTATCTTGGGGGCGGCTCC CCTTAAAATCATAAGGTTGACAAATGCTATGAACTTAAAATTTTGAAAAG TGGCAGATATGGACAATTGAAGGTGATTCTGTTAATCTCTATGTGTTCAT TCTCTTTAAGAATTCGTCAAGATGATAATGCAAAAATGAGAAGAGTCTGG ATGAGAATGATTCTTGGAGAGCATAATATTATTTTTATACTTGTACATAA GAGAATTGGTATCGCTCTACCGTTTCCATGGAAACAAATGTTGTTTAACT GAGGGGTATCAATATTGATAATTTGGCTGCTTGAATGCTGCTGAAAGAAA AAGAAGAACGTTCGAAATGAGTGAAAATCGAAACTAACTGAAAAAAGACA TTTATAGGAAAAACTCAAATTCACTGTGATATTTGACATGAGTCAATTAT TCTAAACAGAATATATTGGTTTTGAATTTTGTAACATTATTATCGAAAAC TTTTTGAATTATGCTTAAAATATTTTTAACTTATTTAGTGAAGATTAGTA AAAGATAAAAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037566XLOC_037566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059720-exon-scaffold_330-1575043694:90782..91080TCONS_00059720-exon-scaffold_330-1575043694:90782..91080Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:89529..89559TCONS_00059720-exon-scaffold_330-1575043694:89529..89559Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:88941..89084TCONS_00059720-exon-scaffold_330-1575043694:88941..89084Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:88551..88661TCONS_00059720-exon-scaffold_330-1575043694:88551..88661Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:88179..88310TCONS_00059720-exon-scaffold_330-1575043694:88179..88310Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1575043694:87017..87420TCONS_00059720-exon-scaffold_330-1575043694:87017..87420Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:90782..91080TCONS_00059720-exon-scaffold_330-1510915933:90782..91080Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:89529..89559TCONS_00059720-exon-scaffold_330-1510915933:89529..89559Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:88941..89084TCONS_00059720-exon-scaffold_330-1510915933:88941..89084Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:88551..88661TCONS_00059720-exon-scaffold_330-1510915933:88551..88661Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:88179..88310TCONS_00059720-exon-scaffold_330-1510915933:88179..88310Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1510915933:87017..87420TCONS_00059720-exon-scaffold_330-1510915933:87017..87420Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:90782..91080TCONS_00059720-exon-scaffold_330-1491911889:90782..91080Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:89529..89559TCONS_00059720-exon-scaffold_330-1491911889:89529..89559Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:88941..89084TCONS_00059720-exon-scaffold_330-1491911889:88941..89084Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:88551..88661TCONS_00059720-exon-scaffold_330-1491911889:88551..88661Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:88179..88310TCONS_00059720-exon-scaffold_330-1491911889:88179..88310Clytia hemisphaericaexon
TCONS_00059720-exon-scaffold_330-1491911889:87017..87420TCONS_00059720-exon-scaffold_330-1491911889:87017..87420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:87017..91080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.10492 0.0829095 0.100027 0.046822 0 0.0406047 0 0.0259079 0 0.0806045 0.0441786 0 57.7268 57.4442 0 0 54.0145 54.9326 24.3051 20.5353 11.044 19.9225 0 0 0 0
Blast
BLAST of TCONS_00059720 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.124e-78
Identity = 116/149 (77.85%), Postives = 134/149 (89.93%), Query Frame = 3
Query:  297 MTESFTDEQVDDFREAFSLFDKDGDGTITTGELGIVMRSLGQSPTEAELQDMINEVDIDGNGTIDFLEFLGMMARKMRSTDAEEEIKEAFRVFDKDGNGYISSVELRHIMTTLGEKLTNEEVEEMIKEADMDGDGTINYEEFVKMIMQK 743
            M +  T+EQ+ +F+EAFSLFDKDGDGTITT ELG VMRSLGQ+PTEAELQDMINEVD DGNGTIDF EFL MMARKM+ TD+EEEI+EAFRVFDKDGNGYIS+ ELRH+MT LGEKLT+EEV+EMI+EAD+DGDG +NYEEFV+M+  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
The following BLAST results are available for this feature:
BLAST of TCONS_00059720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM32.124e-7877.85Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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