TCONS_00059699 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059699
Unique Name	TCONS_00059699
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2300

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_330:408276..415922+

transcript sequence

>TCONS_00059699 ID=TCONS_00059699|Name=TCONS_00059699|organism=Clytia hemisphaerica|type=transcript|length=2300bp
AGAAAGGTATTTATTTTGGTATTTTTCCAAATAAATGGCCAAGGCATCAG
CGGACAAGGATTTCGATCATTTATACAAACTGGTTCTAGTAGGAGATAGT
GGTACAGGAAAAACTGGTCTCGTATCAAGATTCGCACGTGATGAGTCTAA
TGTTAATAAACAGTCAACGATCGGTatagattttaagataagaagcATCA
AAGCTGCTGGAAAAACTATAAAAACACAGATTTGGGATACAGCGGGTGGA
GAGAGATTTCGGACCATCACAAAAGCATATTATCGTGGTGCCGTCGGtgt
ttttattgtttacaaTGTCTCTGTGCAAAAGACTTTTGAGAATGTCCAAC
GTTGGTTAGATGACGTCCGAGAATACTCTGGTCCTGAGGTTGTTCTAATG
CTAGTGGGCAACCAAACTGTGGTTGAAGATTCAGCTGCTAAAGAAGGTTC
TGTCAACACAAAAGAAGCTCAGGAATTTGCtaaacaaaatcatttgatgT
TTATGGAAACTTCAACATTAGATGGCTCGAATGTCGAATTAGCTTTCATC
TCCATGGTTCAGAAGAtttatgaaaaacaaaacaaactggaGAAAGATGA
TGAAGTGGAGCTCTTTCAGGCGCCAGAGAACCTCGAAGATCAAAGAGGAT
ATGAATTTGATACTGTGGGCGATAGCAGACGTCGTGGGCATGAATGCGCC
TTTTGTAATATGATAATCAAGCAATTTACTGAATTACCATGTGGGCATGG
ATTTTGTGGAAGCTGTTTGGAGACTTGGGAACTAAAGGAAGATGAAGGga
aaaatcCGATCTCGTGCATCTTGTGTAAAAAAGAATATGACGTCACAAAG
AAACAGACATCAAATTTTATTGATCGGCAAATAACAGCAGATTTGGAAGT
TTATTGCAAGAAAAAAGACGAAGGATGCAAATGGTCTAGTTTTATCGTTG
ATTTCGAGGGACATTACAAGAATGAATGCCAGTTTGCGATTATCCAGTGC
GTGTTTGATGGATGCGAATTATACTTCAAACGAAAGGACAAGGCGATCCA
CAACAAGAACTGTGTTAAAAGGATTGTACAATGTCCTCATTGCAAACAAG
ATTTTCAATTCTTTAAATTGAATAATCCACATTTCGGAGAATGCGATCAA
TTTCCAGTGGATTGTTTAAATGAAGGATGCGAGGTCAACCTTCCAAGAAT
CGAGatgaaaaataaacatgGTCCAGCATGCAAGTGGGAAAGAGTCGGAT
GTCAGTTTGAAGACTTCGGTTGTCAAACCAAGCTATTACGATCAGAAGAA
GTCAAGCACAACAATGAGTTCAATATTCAACACACCATGTTATTGATGGC
CAAACAGAGAGAAACACTAAACGATCTTCAAACGACCAAAAACGATCTTC
AAACGACCAAAAACGAACTTCAGACAACAACAACCGATCTCCAAACAACG
AAAAACGATCTCCAAACGACGAAAAACGAGCTGCTAGAATCGAAAAAATC
ATTAGAGGAACAAAAGAATCTCAATAAGGAAATAGTCAACAATATCAACA
GATTGCATGTTGCAAATTCTTCCGTCGAAAGCCTTTTATCACTTCTTGTA
AATGGAGACATACCTCGCGCACACACAAAGCCGATTGTATACGATGGTGT
GGAATTTTGCTCTTCATTAGGAAACCACCAACAAATGATGAATACCATTC
TTTCCAAGATGGAATTCGGTAAAACTTACAAAACAGATCTTGGAAAAcgt
ttattttttacatttcgAATGATTCATGACGTCACGTTGTATTTTCAACT
ATACAACAATTATGATCTTGCTTCCACCAGAGAGTCTTACCGAAAACAAA
ATATGTTAGTTGATGGGAGGGACCAACTTATTCTTGTATACTTCGATAAA
AATCGAGGTGATCAATACCAAGTTTGGATGAATAACCGCGACTTCACTAA
AACAAATTCGTCCGTTTTTCTACACAATATGAAAAAGAATGGTGACCGAC
GACAAATTAGGTATCATGTACTTGAGAACATCGCTTGGGATGACTATAGA
AACGAAGATAAAtatgttctttttgaattgatGAAGAAATGATTCAAACT
GGATAATATTTCAAAGAGACGCGTTAGAGTGAACTGGGGACGAGGTTGTC
AAAAAATGAAATGGTCAAGTCATGCATTATGCAACATGTttggaaaaaca
ttttcttaatGATTAAACAATTTGAGTACTATCTATATACATTTACATCT
GAAAAGTTAACAATTAATAATATATTCTACACTATTCTTCTTGCATGAAA

Run BLAST on NCBI

transcript from alignment at scaffold_330:408276..415922+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059699 ID=TCONS_00059699|Name=TCONS_00059699|organism=Clytia hemisphaerica|type=transcript|length=7647bp|location=Sequence derived from alignment at scaffold_330:408276..415922+ (Clytia hemisphaerica)
AGAAAGGTATTTATTTTGGTATGTTTATTAAATTGTTCAATCCTTTGTTT
GTTTCAAGGGAGAATCGTCTGTCGATGTGTGCTGCTACGCTGGAAGTCAA
GAACTCACTGGGATTCAAGATAATATCGGTTTAATCTTTTGATTTGTCTA
TTGTTAAGAGCGAAAAACTTTGAGAATGTTCACGAACAAAATTAAATTCG
GTGAAGATGCTTATTTTTTAGTCCAAACAATAGGAAAGACCTGACACAAG
GAATAATTTGAAAACTGATATTTCTTTACCTCTTGATAAGAATTTTGTTT
ATCTTGCAAAAATGTACTTGATGATGTCACCCTGGTGTCTTGCGAAATCA
AAGCATTCCATTGACCGTGTTCATACGCAAAAAACAACAGAGAAAGAAGC
CTACACgcttataagaatattcataaaGAAATTGGCCAAacaattaagaa
tatgctaagaacgTTCACGTTgttatatcttttgtcaaataatGCAATTA
ACGTCAATAATTAATCTTAATACTCTtgaacgcaaaggttgatgggatta
gagctcgtacaaacacatcgagaggaATTATTATGTCAAAAGTAAAATAT
ATTCTTAGTTTCACTATCTACGTATAAATACAGCCATGACAAACTTTCGA
AAGGCAGTAAGCAGTGCTTTTATGCTTTAATGCAAAATGTTTAATATTGT
TTTGTAGAATCTGAACACAAACGGTGACGGTTATACCACCGTAACAAGAT
GTTCAAACATAAGATGATTTTCATGGATTGAGGTTTGGCTAGGGGTAGTT
TTCGATGATTTATTCTTTTAAATTCTATTCAAATTCCTCAATATTTGAAG
GTTTGAAATAAAATGTCTGTGTGTCCAACTTTCATTTTCGCGTTCACTTT
TGTAGATCTTGCAATATGAAAAGTCTTTTTGGCAAAACAAGCTTTCCATC
AGCATCAGTATTCATTtatatattttctattttgttccAGGTAGTTTTCC
AAATAAATGGCCAAGGCATCAGCGGACAAGGATTTCGATCATTTATACAA
ACTGGTTCTAGTAGGAGATAGTGGTACAGGAAAAACTGGTCTCGTATCAA
GATTCGCACGTGATGAGTCTAATGTTAATAAACAGTCAACGATCGGTata
gattttaagataagaagcATCAAAGCTGCTGGAAAAACTATAAAAACACA
GGTAACTCTTTTTTTTCTACTTCTGCTTTACTTTGATAAGTTATTCACAG
TTTTGCCATTTTGGAGAATTCTCCGTTAACACACGTCAACAAAAACTTAA
GCAATTCAAAGATCTGTGTCTCTTGATTCAGCCACTTAACACCGTTTGAC
CACAGTGTGGAAGAAAAGTTAAAGTTAAGGAAATTtggctttgttttttt
tataagcatataaaaatctgaaaacaggctcagagatgcttaggtcgaaa
gcttaataaggctgaaaaaatgctttagggatgcttatatcctaacaTGA
ATTTTTCGAGGATGCTTACAAAAGATAATGAATCAGGCTCAAAATATGCT
TAAATTAGCCTATAGAACTCTTGGCTAAGTTAATGCCCATATAACAAACG
AAAGCGGGGAAAGGGGAAAAAAAGAAACAGGTTTTTGGTTTAGTTTTCGA
TTTGCTTTGCAATggcttcacaaaaaaataaagtagcTATACTACAAAGT
AGCTTATACCTTTTTCATAGGCTCGAggtaatgcttagcatatgcttaat
tttcccCACATCTGAGCTTAGATATGCTCATAAGTGCAatgcttgagaaa
aaaaaacatgtatttcaaatttaattttttgatttgattttaatcGTCTT
TTTGGACCCCAAAGAGGGTTCATTTGAATGCATAGCCTTTTAAgggggtt
ttcaggggtcttaaataccgtcataccgacaataatttgggtcaaatacc
gtaatatcGTCGATGAAAGAAGCCTAATTATCTAAATACCGGTACCGGTA
GAAAAttaaataccgtaatcccgtcgtttttttctggtaataccgattta
ccggggaaaaaaaggcccaataccgtcgtaccgtaaaaattacccccccc
ccccccaaaaaagcccccccccccccccttaaactTTTAAGACAATaagg
tttttttcaaatttttcacttttactaATTCTGGTTGTATACTCTACAAC
CTTGGAAAACACTTAGTGACCCCTGGCCTGGCCTTTTTGGAAGTCTTCAA
AAAACGGTCCATAGTTGTTGGTtgcaaaattcaattttatggCATGTACA
TGTCAAGCGATACATCAGCTCTTTCGCTTTAAGCAAAGCACCCTACATAC
ATATTTACACTActataaatttgaataaaacccTTTTTTGTCTTTAATTT
TCAGATTTGGGATACAGCGGGTGGAGAGAGATTTCGGACCATCACAAAAG
CATATTATCGTGGTGCCGTCGGtgtttttattgtttacaaTGTCTCTGTG
CAAAAGACTTTTGAGAATGTCCAACGTTGGTTAGATGACGTCCGAGAATA
CTCTGGTCCTGAGGTTGTTCTAATGCTAGTGGGCAACCAAACTGTGGTTG
AAGATTCAGCTGCTAAAGAAGGTTCTGTCAACACAAAAGAAGCTCAGGAA
TTTGCtaaacaaaatcatttgatgTTTATGGAAACTTCAACATTAGATGG
CTCGAATGTCGAATTAGCTTTCATCTCCATGGTTCAGAAGAtttatgaaa
aacaaaacaaactggaGAAAGATGATGAAGTGGAGCTCTTTCAGGCGCCA
GAGAACCTCGAAGATCAAAGAGGATATGAATTTGATACTGTGGGCGATAG
CAGACGTCGTGGGCATGAATGCGCCTTTTGTAATATGATAATCAAGCAAT
TTACTGAATTACCATGTGGGCATGGATTTTGTGGAAGCTGTTTGGAGACT
TGGGAACTAAAGGAAGATGAAGGGTAATCatttattttggtaaaattcAT
GAGCTTTAACAGGGAGTttacgggaccttgaaaaccttgaaaatcgtTAA
GAACATTGAAAAGTACTTTTTCTTATTCATCCTAGGTATTTATAGAATAT
CCccatggctgaatttcttggggcaaatggggcaatgCGTGACGAGTTGT
GGCAACATTAGATATAGAAAACTCAGTGATACCCCGTGGCtgacttaggc
aaaaataggtgctgtgTATGTGCGGATGGTAAGGGTcaattttttcacct
ttcaaagtttctctaagggttgcaaaaatctgaaaaaaattagtctctct
aagtgtcggaaaattcacgatttttaggaaatactTTTGATTAagagtga
aaaaattgtaaaaaagtctctaagGCTCTTATCtagggaatttttcaaaa
atcgaagaaaattaagggtcaccttttcagcaaaaatcagtttctctagg
ggtcggtttttggaggtccaatccgcacatacccctcatccgccaaccct
agtaccccctccggGCCTAACTCCTAACTCACCAACTAAAACATTACCTA
TAATTTTTTCTGAATGGGGCAGTGGCTAGAGTTTAAGTTTTTTTCTAGAA
TTAAGGGTTTTAAGTCCTGGGGTTGGTACTTGGGCAAAAAGGAGTACGGA
GATCTTTTTTATTtccatgagtcccaggtagggtcacgATAttaccaaaa
tagaaaaatctttCCCTTGTAAGAGTACCTTTTGGGTTGGGGGATTTCGG
AgaaaaattgggaaattttgagaaaattttgtaatttcagtTCCATTCAA
GataactttttttgcaaattttggcaaaattgttGGTCAGCAAGAGTGGT
AACCCCGTATATACCGTACCGTACTATCCTGGGTAccacaaaaccttgaa
aagtaccattatttttgccaaaaatttttggaaaaccaCCTAAAAATGTT
GATGAACATGCGTAGACACCCTGTATGTCACACAAATAATCTGTAAGTGA
ATAAATGACTCTCGAAATGACTTGTTAAACAGAGGAAATATATGACGCTT
GTCATCCAGGGTAGATTGTcaatttttataggaaaaatcCGATCTCGTGC
ATCTTGTGTAAAAAAGAATATGACGTCACAAAGGTTTGTTGTTTGAGATT
TTTTATCGTGTTTCTTCCTGAAATGGcctgaaaatatttaaatcatTTAT
TCCACACTCTTCAAAATAAAGGAAATTGCAAGATCATTTATTTTAACTTA
TTCTGTACATTGTGTATTTTTGTAAGTTTTCATGCATCCGCTAGCGTAGA
ACAGTTCTGGACACAACGAATATGTTATTAGATGAAAAATATAGGGGTAA
CCCTTCCTTCTTCAGAAACAGACATCAAATTTTATTGATCGGCAAATAAC
AGCAGATTTGGAAGTTTATTGCAAGAAAAAAGACGAAGGATGCAAATGGT
CTAGTTTTATCGTTGATTTCGAGGTACCACATGTCATGCTTTTTAGAGTC
GGATTTTAGTGTTTTATTTGATACTGGCCGAGTTTTAAAACCTGTCaaat
tttaaatgatcaataTCAATAAGCGTAAAAAGCACCGATAGCGTGAAGTA
TAATGTAAAAAGATTATTCAAACCTCTTTTTTCATATCTAGGGACATTAC
AAGAATGAATGCCAGTTTGCGATTATCCAGTGCGTGTTTGATGGATGCGA
ATTATACTTCAAACGAAAGGACAAGGCGATCCACAACAAGAACTGTGTTA
AAAGGATTGTACAATGTCCTCATTGCAAACAAGATTTTCAATTCTTTAAA
TTGAATAATGTAAATATCTCATATTACTGTCCGACATATAAAATCTTCAC
GGTTCTAGCTGAATTAACCCTGGTAGTTTTTGAATTCTTGTGGAAGGATT
TTTTCTTTCTACTCAACATTTTATGTAAAATGCACTGTAGGGTACCTTTT
CATTGTTCAAGGGCTGcacgattttgaaagccattgTTTTGGCGGCACGT
gacgtcgtttagaaatcgagtgcctcCCCCCACCGGGACTGCCTCAAATA
GATTCTCATCAAATGTTCGATTTCTTCGATTTTTCAGCCACATTTCGGAG
AATGCGATCAATTTCCAGTGGATTGTTTAAATGAAGGATGCGAGGTCAAC
CTTCCAAGAATCGAGGTATTCCTCGTTTGATATTGCTCTTATTTCTTTAC
TggttaaattttcattatttacaTGCTTACCGGTGCTCTTACGTACGTAC
CCAcattaataaaacaaaaaatcacaaatattaTTATTTCAACAATAACT
TAGGGGAATATTTTCACGGAATTCAATTTCGCGGTTGAGTGAACATTTTA
TTTAtaatatggcctattttgccctaaaatagTTTAAAAACGAAAACGAC
GAAAATTTGTTCCACGAATATTTCTTCACTTATGGTAAAACTTTGAGTTT
TTGTTAGACATCTAGTCTCTATCAAACGTTCAATTTTCTAAGGATCGCGA
AACCCAGCATCCATCAACCCTACACCACCCTCCAAGCATTCCAGTGTTAT
ACAACCAGGTTTTTCATCTCAAAAACAAAACTACAGAAAATTGTCacatt
ttttgggattttctttCCAAGAAGTCTGCTTTATAGGCGTATTTGCGATT
TTTTCAAAGCTATCAAGTACCAATCTAACGTCCTCCTCCATTTTCACCTC
GTTCTTGAAATAAAGTATAACCTCGCAGGTTCAAGAACATTCTTCCTCAT
TTTGGAATATTCAATTGTAACATTCTGATGCTACCCCAGCTATTTCCTTC
CTCGTCGAATTCGAGGGACTGTTCATTCAACGCCTCCCTTTATCAGACGC
CAGAGTAATCCCTTTACAGGTTAtataaactttttcatttatttcagatg
aaaaataaacatgGTCCAGCATGCAAGTGGGAAAGAGTCGGATGTCAGTT
TGAAGACTTCGGTTGTCAAACCAAGGTATCAAATCATTTTTGTCATTGCA
ATGTACTGAATATTTCTGTTCAAAATATATCTCAAATCTTATTTGATATA
ATACTTTCACAGGGAATCGAAGCTTCAATTGAGGGACAAGAGGTTAGGGT
TACTGGCGACATTTTGTGGGTAGTCACTTGATTGCGGTGTGAGAGTGTAA
GAGAAGAAGTTTTGGCAAATGAACCCATCActaattttggtgcaatttag
cgagaattaattttggcgaacgatcaatttttgttcaatattttagctga
aaaagagtgaaaaaagggtttttaggaaaaatagagatactaaaatgaaa
gaaaattgaatttggtGAGaatttattttcgcggatgacctATAATCAAT
TATGataatttaaatttctttcctGACGGTATTTCCTAAGCCCTCTGATG
TTCATTTCACCTGCCTTGGCTATTGTACAAAGGTATACACCCTCTGAGTC
GAGTCTGTTCTACCTCTATGAGTGACCCAAGTATATCAGCCACGTTTGTA
TATAGCACTTGATCAATACACATGGTCGAACGGTacccttttcttttttt
gccgacgaCTAGTTTGCAAGCTTTcatgttcaaatttttttctctcattg
TTAATGTTTTCTAATCATCCCTGTTATAGCTATTACGATCAGAAGAAGTC
AAGCACAACAATGAGTTCAATATTCAACACACCATGTTATTGATGGCCAA
ACAGAGAGAAACACTAAACGATCTTCAAACGACCAAAAACGATCTTCAAA
CGACCAAAAACGAACTTCAGACAACAACAACCGATCTCCAAACAACGAAA
AACGATCTCCAAACGACGAAAAACGAGCTGCTAGAATCGAAAAAATCATT
AGAGGAACAAAAGAATCTCAATAAGGAAATAGTCAACAATATCAACAGAT
TGCATGTTGCAAATTCTTCCGTCGAAAGCCTTTTATCACTTCTTGTAAAT
GGAGACATACCTCGCGCACACACAAAGCCGATTGTATACGATGGTGTGGA
ATTTTGCTCTTCATTAGGAAACCACCAACAAATGATGAATACCATTCTTT
CCAAGATGGAATTCGGTAAAACTTACAAAACAGATCTTGGAAAAcgttta
ttttttacatttcgAATGATTCATGACGTCACGTTGTATTTTCAACTATA
CAACAATTATGATCTTGCTTCCACCAGAGAGTCTTACCGAAAACAAAATA
TGTTAGTTGATGGGAGGGACCAACTTATTCTTGTATACTTCGATAAAAAT
CGAGGTGATCAATACCAAGTTTGGATGAATAACCGCGACTTCACTAAAAC
AAATTCGTCCGTTTTTCTACACAATATGAAAAAGAATGGTGACCGACGAC
AAATTAGGTATCATGTACTTGAGAACATCGCTTGGGATGACTATAGAAAC
GAAGATAAAtatgttctttttgaattgatGAAGAAATGATTCAAACTGGA
TAATATTTCAAAGAGACGCGTTAGAGTGAACTGGGGACGAGGTTGTCAAA
AAATGAAATGGTCAAGTCATGCATTATGCAACATGTttggaaaaacattt
tcttaatGATTAAACAATTTGAGTACTATCTATATACATTTACATCTGAA
AAGTTAACAATTAATAATATATTCTACACTATTCTTCTTGCATGAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037558	XLOC_037558	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_330	supercontig	scaffold_330:408276..415922 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0725597	0.0414045	0	0.0148204	0.603418	0.699165	0.580496	1.62841	2.79767e-05	0.703967	0.383954	5.26651	0.6114	5.41302	5.73875	0.900241	2.32918	0.00116553	4.51966	0.272569	0.0235612	0.901649	0.735315	1.7853	2.90242	0	0	0.209756	4.11332

Blast

[Close]

BLAST of TCONS_00059699 vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 2.185e-57
Identity = 94/193 (48.70%), Postives = 138/193 (71.50%), Query Frame = 2

Query:   53 DKDFDHLYKLVLVGDSGTGKTGLVSRFARDESNVNKQSTIGIDFKIRSIKAAGKTIKTQIWDTAGGERFRTITKAYYRGAVGVFIVYNVSVQKTFENVQRWLDDVREYSGPEVVLMLVGNQTVVEDSAAKEGSVNTKEAQEFAKQNHLMFMETSTLDGSNVELAFISMVQKIYEKQNKLEKDDEVELFQAPEN 631
            D ++D+L+K+VL+GDSG GK+ L+SRF R+E N+  +STIG++F  RSI+  GKTIK QIWDTAG ER+R IT AYYRGAVG  +VY+++   T+ENV+RWL ++R+++   +V+MLVGN++ +    A    V T EA+ FA++N L F+ETS LD +NVE AF +++ +IY   ++ +  D  E   +P N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN 193

The following BLAST results are available for this feature:

BLAST of TCONS_00059699 vs. Swiss-Prot (Human)

BLAST of TCONS_00059699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RB11A	2.185e-57	48.70	Ras-related protein Rab-11A OS=Homo sapiens GN=RAB...	[more]

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TCONS_00059699 (transcript) - C. hemisphaerica