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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059697 ID=TCONS_00059697|Name=TCONS_00059697|organism=Clytia hemisphaerica|type=transcript|length=1987bp
CTTTTAATCCCCACCCAAAATGCTTGAACAGGAGACTTGCATAGCTTTAG
TAGCTTAACCCGTCCTACAATGGACATCCTACAAGGGTTATCAAACCCTC
TGGTGTCAAATTTTAAATATCCTGAAACCCTCCCTTGAAACTCCTATCCT
ATAGGGGTTGAAGCTATGTTATATAACCAATAATAAAAGTTTGAAGTATT
TTCAATGTGTATTTCATTCTCTTTTAGTGATTCAAGAAGAAGCAGTTGAA
TCCAGGTCAGAAGTCAAAGTCTTTGACAAATCTAACCTGAAATCAGTTGA
AACCGTTGAGAAAAACACTCTCCCAACTGCTGCAACCTTAAAAGAAGAAA
CTCGACCAGAGGTCTTGCCTGATGTTTCTGGAGTTGCAGAATTTGATGCT
TCTAAATTGAAACATGTTGAAACAGAAGAAAAAACCGTTTTACCCACTTC
AGATGTTATTCAAGAAGAAGCAGTTGAATCACGTGCAGAGGTCAAAGTCT
TTGACAAATCTAACCTGAAATCAGTTGAAACTGTTGAGAAGAATACTCTC
CCAACTGCTGCAACCTTGAAAGAAGAAACTCGACCAGAAAGTTTGCCAGA
TGTTTCAGGTGTTGCTGAATTTGATGCCTCCAAATTAAAGCATGTAGAAA
CAGAGGAAAAATCTGTTCTCCCCACTGCTGATGTTATTAAGGAGGAATCT
GTTGAATCAAGATCTGAGGTTAAAGCGTTCGataaatcaaaactcaaatc
gGTTGAAACAGAGGAAAAGAACACTTTACCAACTGCTGCAACTCTAAAGG
AGGAAACTCGACCAGAGGTGTTACCAGACGTGTCGGGCGTTGCTGGATTT
GATCCATCCAAATTAAAACATGTAGAAACAGAGGAAAAAACTGTTTTACC
CACCGCAGAAGTGATTAAAGAAGAATCGGTTGAATCTCGGTCAGAAGTTA
AGTCTTTTGATAAATCTAAACTTAAATCTGTAGAAACAGAGGAAAAGAAC
ACTTTGCCAACTGCTGCCACCCTCAAAGAAGAAACGCGACCAGAAAGCTT
GCCTGATGTTTCAGCCGTTGCTGGATTTGATGCCTCTAAATTAAAGCATG
TAGAAACAGAGGAAAAAACTGTTCTCCCCACCGCTGATGTCATTAAAGAG
GAAGCGGTTGAATCAAGATCTGAGGTTAAAGcgtttgataaatcaaaact
taaATCTGTTGAAACAGAGGAAAAAAACACTTTGCCAACTGCTGCAACAT
TAAAGGAGGAAACTCGTCCAGAGGTGTTACCAGACGTGTCAGCTGTTGCA
GGATTTGATGCCTCCAAATTAAAGCATGTAGAAACAGAGGAAAAAACTGT
TTTACCCACCGCAGATGTAATAAAGGAAGAGTCGGTCGAATCTCGATCAG
AAGTCAAATCTTTTGATAAATCTAAACTTAAATCTGTTGATACAGAGGAA
AAGAACACTTTACCAACTGCTGCAACCTTAAAAGAAGAAACTCGTCCAGA
GGTGCTGCCAGATGTTTCTGGAGTTGCAGGATTTGATGCTGCTAAATTAA
AACATGtagaaacagaagaaaaaaCCGTTTTACCCACCGCAGAAGTCATT
AAAGAAGAAGCAGTCGAATCACGATCTGAGGTTAAAGCTTTCGATAAATC
AAAACTTAAATCCGTTGATACAGAAGAAAAGAATACTTTACCAACTGCGG
CCACTCTCAAAGAGGAAACTCGCCCAGAGGTCCTTCCAGATGTTTCAGCT
GTTAAAGATTTCGACAAGGGTCAATTGAAAGAATCAAAGACCGAAGAAAA
GGCAGTATTACCAACCAAAGAAGGTGAGTTCACAATTAAActgtttattt
ttataatttaacaTCTTCAGGGCTAGAAATAACTGTCggacccaaatagc
ttcatgtccgacccaaaaatcgtaattttcaagctaaagcaactctgatc
ggacattttgtccgacccacttgaaattgTTATTTCG Run BLAST on NCBI transcript from alignment at scaffold_330:311308..313294+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059697 ID=TCONS_00059697|Name=TCONS_00059697|organism=Clytia hemisphaerica|type=transcript|length=1987bp|location=Sequence derived from alignment at scaffold_330:311308..313294+ (Clytia hemisphaerica)
CTTTTAATCCCCACCCAAAATGCTTGAACAGGAGACTTGCATAGCTTTAG
TAGCTTAACCCGTCCTACAATGGACATCCTACAAGGGTTATCAAACCCTC
TGGTGTCAAATTTTAAATATCCTGAAACCCTCCCTTGAAACTCCTATCCT
ATAGGGGTTGAAGCTATGTTATATAACCAATAATAAAAGTTTGAAGTATT
TTCAATGTGTATTTCATTCTCTTTTAGTGATTCAAGAAGAAGCAGTTGAA
TCCAGGTCAGAAGTCAAAGTCTTTGACAAATCTAACCTGAAATCAGTTGA
AACCGTTGAGAAAAACACTCTCCCAACTGCTGCAACCTTAAAAGAAGAAA
CTCGACCAGAGGTCTTGCCTGATGTTTCTGGAGTTGCAGAATTTGATGCT
TCTAAATTGAAACATGTTGAAACAGAAGAAAAAACCGTTTTACCCACTTC
AGATGTTATTCAAGAAGAAGCAGTTGAATCACGTGCAGAGGTCAAAGTCT
TTGACAAATCTAACCTGAAATCAGTTGAAACTGTTGAGAAGAATACTCTC
CCAACTGCTGCAACCTTGAAAGAAGAAACTCGACCAGAAAGTTTGCCAGA
TGTTTCAGGTGTTGCTGAATTTGATGCCTCCAAATTAAAGCATGTAGAAA
CAGAGGAAAAATCTGTTCTCCCCACTGCTGATGTTATTAAGGAGGAATCT
GTTGAATCAAGATCTGAGGTTAAAGCGTTCGataaatcaaaactcaaatc
gGTTGAAACAGAGGAAAAGAACACTTTACCAACTGCTGCAACTCTAAAGG
AGGAAACTCGACCAGAGGTGTTACCAGACGTGTCGGGCGTTGCTGGATTT
GATCCATCCAAATTAAAACATGTAGAAACAGAGGAAAAAACTGTTTTACC
CACCGCAGAAGTGATTAAAGAAGAATCGGTTGAATCTCGGTCAGAAGTTA
AGTCTTTTGATAAATCTAAACTTAAATCTGTAGAAACAGAGGAAAAGAAC
ACTTTGCCAACTGCTGCCACCCTCAAAGAAGAAACGCGACCAGAAAGCTT
GCCTGATGTTTCAGCCGTTGCTGGATTTGATGCCTCTAAATTAAAGCATG
TAGAAACAGAGGAAAAAACTGTTCTCCCCACCGCTGATGTCATTAAAGAG
GAAGCGGTTGAATCAAGATCTGAGGTTAAAGcgtttgataaatcaaaact
taaATCTGTTGAAACAGAGGAAAAAAACACTTTGCCAACTGCTGCAACAT
TAAAGGAGGAAACTCGTCCAGAGGTGTTACCAGACGTGTCAGCTGTTGCA
GGATTTGATGCCTCCAAATTAAAGCATGTAGAAACAGAGGAAAAAACTGT
TTTACCCACCGCAGATGTAATAAAGGAAGAGTCGGTCGAATCTCGATCAG
AAGTCAAATCTTTTGATAAATCTAAACTTAAATCTGTTGATACAGAGGAA
AAGAACACTTTACCAACTGCTGCAACCTTAAAAGAAGAAACTCGTCCAGA
GGTGCTGCCAGATGTTTCTGGAGTTGCAGGATTTGATGCTGCTAAATTAA
AACATGtagaaacagaagaaaaaaCCGTTTTACCCACCGCAGAAGTCATT
AAAGAAGAAGCAGTCGAATCACGATCTGAGGTTAAAGCTTTCGATAAATC
AAAACTTAAATCCGTTGATACAGAAGAAAAGAATACTTTACCAACTGCGG
CCACTCTCAAAGAGGAAACTCGCCCAGAGGTCCTTCCAGATGTTTCAGCT
GTTAAAGATTTCGACAAGGGTCAATTGAAAGAATCAAAGACCGAAGAAAA
GGCAGTATTACCAACCAAAGAAGGTGAGTTCACAATTAAActgtttattt
ttataatttaacaTCTTCAGGGCTAGAAATAACTGTCggacccaaatagc
ttcatgtccgacccaaaaatcgtaattttcaagctaaagcaactctgatc
ggacattttgtccgacccacttgaaattgTTATTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059697-exon-scaffold_330-1491911889:311308..313294 | TCONS_00059697-exon-scaffold_330-1491911889:311308..313294 | Clytia hemisphaerica | exon |
| TCONS_00059697-exon-scaffold_330-1510915933:311308..313294 | TCONS_00059697-exon-scaffold_330-1510915933:311308..313294 | Clytia hemisphaerica | exon |
| TCONS_00059697-exon-scaffold_330-1575043694:311308..313294 | TCONS_00059697-exon-scaffold_330-1575043694:311308..313294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:311308..313294 + |
Blast
The following BLAST results are available for this feature:
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