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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059682 ID=TCONS_00059682|Name=TCONS_00059682|organism=Clytia hemisphaerica|type=transcript|length=2793bpRun BLAST on NCBI protein sequence of TCONS_00059682-protein >TCONS_00059682-protein ID=TCONS_00059682-protein|Name=TCONS_00059682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=570bp MSSIISLRTIRRLQKYVPLLSRCHSSLSPQHTDYAYLTEDNIVKSTIQLDRun BLAST on NCBI transcript from alignment at scaffold_330:233195..242482+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059682 ID=TCONS_00059682|Name=TCONS_00059682|organism=Clytia hemisphaerica|type=transcript|length=9288bp|location=Sequence derived from alignment at scaffold_330:233195..242482+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_330:233195..242482+ >TCONS_00059682 ID=TCONS_00059682|Name=TCONS_00059682|organism=Clytia hemisphaerica|type=CDS|length=13704bp|location=Sequence derived from alignment at scaffold_330:233195..242482+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059682 vs. Swiss-Prot (Human)
Match: ACSF2 (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2) HSP 1 Score: 148.673 bits (374), Expect = 3.211e-37 Identity = 127/493 (25.76%), Postives = 220/493 (44.62%), Query Frame = 1
Query: 688 GDRLAIHTPNCLEYSFATMGSLASGLTLNTVNSAYTNFELKNLLNSSTPRALVTSS---------------AQLEQARR-CIDGTNTDLLICVDDVACNDSGVFNLSDILNNGDENFNKD--------LSKLDPNKETAFLLYSSGTTGLPKGVMISHHAF--SSNIIQLTGALEGMLPKKTLCFLP--IYHIYG-LNYIMMLHLYNRSQLHVVPGFDPVQFLSLIQEKKIERVSIVPPVAVFLLNHPLVDQYDLSSLRSITVGAAPIDEIAINQFNTKFPNVILQQGYGMTETN-ITHSQCIYPQ---LQKAGSCGTVLPDVMCKVISLDDGEALGPNEQGEVCTGGNQLMTGYYNNEEATRNTIDEEGWVHSGDLGYYDDDLNFFIIDRLKELIKYKGLQVAPAELEDLLLGHDQITDACVIGVPCDRTGELPRAYVVKRPDSTLTTKDVEDYVADKLSDHKKLRGGVEFIEQLPKSAAGKLLRRVLKDQF 2067
GDRL + PN + + + +G+ L +VN AY EL+ +L +ALV ++E A+ + L V V G L +++ G + D LS DP + ++SGTTG PKG +SH+ +SNI+ L P++ LP +YH G + MM +Y + + P F+ + L I ++ + P + V +LN P YD+S++ + +P I K L YG TE + +T + +P+ QKA S G ++P ++++++ G N GE+C G +M GY+ + T +D++ W +GD+ ++ I+ R K++I G + PAELED H ++ + V+GV DR GE A + + T ++++ + K+S H K+ + F+ P + +GK+ + L++Q
Sbjct: 124 GDRLGMWGPNSYAWVLMQLATAQAGIILVSVNPAYQAMELEYVLKKVGCKALVFPKQFKTQQYYNVLKQICPEVENAQPGALKSQRLPDLTTVISVDAPLPGTLLLDEVVAAGSTRQHLDQLQYNQQFLSCHDPIN----IQFTSGTTGSPKGATLSHYNIVNNSNILGERLKLHEKTPEQLRMILPNPLYHCLGSVAGTMMCLMYGATLILASPIFNGKKALEAISRERGTFLYGTPTMFVDILNQPDFSSYDISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENSPVTFAH--FPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFCKGKIS-HFKIPKYIVFVTNYPLTISGKIQKFKLREQM 609 The following BLAST results are available for this feature:
BLAST of TCONS_00059682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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