TCONS_00059674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059674
Unique NameTCONS_00059674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059674 ID=TCONS_00059674|Name=TCONS_00059674|organism=Clytia hemisphaerica|type=transcript|length=864bp
AACAATATGGTTTCTCTTTACAAGAATCTCTTGTGAAGTCACGGAGTCAA
CCATTGTTGGAAAACAAAAAGATACACATCACCAAATCGGTGAAACCGGA
ACCTAAACATATGAAGGAAATGGTTGAATGTTGCGGTGGACAGTACATTA
CAAAGTCAACGAAGCttgctgatgacgtcattgtcaTCTCATGTGATGAA
GACGCAAAGGATCATGGGAAATTTGCTAAGAATGTGATATGTTCCAATGA
ACTGTTGCTGACGGGCATCCTCAAGCAACAACTGGACGTGGAACAATACA
GGCTGAATGCTGGTCAACAACCATCAACAGCGAATGACGGCAAACGAAAG
AGAGCAAGTGTTGCAACTGCTTCAAATGGAAAGAAGTCTAAGAAAAAGTA
GACTAAATCTCAAGGGGCTCCCCTATCACAGCTTTAACGAGTTTCCACTC
TGTTTTCAAAATCTCCGAATCTATTTTAGTAAACTCTTTCAGAAATCTTC
AGCTCTAGAGTTTTCCTTAAATAATACCATTCCAGTCGAAATAACGTTTG
AGAAGTAAAGCTGCCGACCATATGCAAAGAAACTCTCGATTATGACCCTA
TCCTGACGTGTCGACAAAAAAATCGAGCCTTAAAAAGGATTATAAAAAGA
GGCAGAGCATTATGTGTTTTCGTAATATAGATGTGACGTGACGTgacttt
tttaaaaagtattttatttaaatttaatttgttaCTTTGCGAGGGTATGA
AAATGTAGTCTAATATTTTTAGCTTAGCTTTATTACTTACTCACAACTTA
TCTTTATAGAGCTTTCAATGTAAATaacttgtaaacaaaaaatcaaaaac
gatTTATATTAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_330:192412..194879+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059674 ID=TCONS_00059674|Name=TCONS_00059674|organism=Clytia hemisphaerica|type=transcript|length=2468bp|location=Sequence derived from alignment at scaffold_330:192412..194879+ (Clytia hemisphaerica)
AACAATATGGTTTCTCTTTACAAGAGTAAGTAATAATAAttaataatgct
atacaagttcgcaggccaccatgcgagcacatgggcctctatgaaccgct
ctttgttcgAGTAAGTTCTATGTGCTGTTTGAATTGTTCAAATTTGCCAT
TAGAAGGTCAAGTTTTTCAAGAGCAAACTATTACTCTAAtatgatttaga
ttttataacATCGTTTTGTAAACGTTTCAACTGTACTCGATTGTATAAAG
AAGCCTTACATAGCCGTcaagaaaaattaacatttgcatttttttgcagt
actcaaagtttcacggctatatgactATCATGAGCTACTAAACGTGATtg
catttttttctcaataccATAAGTATTGTAAAACGTGCATAGTTTAATAT
GGTCAAATGTTGATACATTATGTCGCTGTGTTCTTATCCTTAGATCTCTT
GTGAAGTCACGGAGTCAACCATTGTTGGAAAACAAAAAGATACACATCAC
CAAATCGGTGAAACCGGAACCTAAACATATGAAGGGTATGATAGTTTAAC
ACTTTTTTTTAGATTATAAACACGAccatggctccgactggggttctatG
TCCCAGgtccccccgccaaatttaggtcccccctgagaacaaggtccccc
agcctgataaaattttaggtcccagtataggggaaaaattttatggcatt
cacaatgctctatttacatgtgttcacttttagagaatgcaatagaatgt
cttcatttttgcattttaaggatcagatcacactttgcatgaaaacataa
aggtttagagaaattaaaaaccaacaNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGTGGGAGCCATGACGA
TGCTCAAAAGTTATTGCCTAATGAAGAAACGCCTAGGCTTGTAGTTTcca
ttttttcaatgtttgacAATGCTCATTTTGTTTACActaaatgacatcat
tttccGATTTGTTTAGAAATGGTTGAATGTTGCGGTGGACAGgtttttca
ttctttcatttcatttcttttcttcTAGTTAAAAGGCAAATCCTAACGCT
TTCCTTCGAACCCTTTCTAATAAGCCTCCTCTGCTTTCATCAATAGCACT
TTTTGCTGTGTTCCCAAACTTGCACTAATTAGATTTCAAGGGTTTTGAGT
TTTAAGGGTTGAATCTTATTGactcttttttataaagaaTAGAAATAGTC
AAATTTATCAGAAATCTGTTTTTAATTCATTATAGTACATTACAAAGTCA
ACGAAGCttgctgatgacgtcattgtcaTCTCATGTGATGAAGACGCAAA
GGATCATGGGAAATTTGCTAAGAATGTGATATGTTCCAATGAACTGTTGC
TGACGGGCATCCTCAAGCAACAACTGGACGTGGAACAGTAAGGAAGAATT
ATTGGCTcttttagaaaagaaaagatttcctTACTAGTTTCGAAAANAGT
AAGGAAGAATTATTGGCTcttttagaaaagaaaagatatcTTTACTAGTT
TCGAAAACCTTTAAGCGTTTTTTATAAGTTCAGATAAAGTGATGTAGTGA
TGCTTTACtgagaaaattgacttttattgtAAAAGCAACCTCATGCATGC
GAGTCATacatggcaaaaatgatcatGGTTTGATCTTTCTTTCTTCCAGA
TACAGGCTGAATGCTGGTCAACAACCATCAACAGCGAATGACGGCAAACG
AAAGAGAGCAAGTGTTGCAACTGCTTCAAATGGAAAGAAGTCTAAGAAAA
AGTAGACTAAATCTCAAGGGGCTCCCCTATCACAGCTTTAACGAGTTTCC
ACTCTGTTTTCAAAATCTCCGAATCTATTTTAGTAAACTCTTTCAGAAAT
CTTCAGCTCTAGAGTTTTCCTTAAATAATACCATTCCAGTCGAAATAACG
TTTGAGAAGTAAAGCTGCCGACCATATGCAAAGAAACTCTCGATTATGAC
CCTATCCTGACGTGTCGACAAAAAAATCGAGCCTTAAAAAGGATTATAAA
AAGAGGCAGAGCATTATGTGTTTTCGTAATATAGATGTGACGTGACGTga
cttttttaaaaagtattttatttaaatttaatttgttaCTTTGCGAGGGT
ATGAAAATGTAGTCTAATATTTTTAGCTTAGCTTTATTACTTACTCACAA
CTTATCTTTATAGAGCTTTCAATGTAAATaacttgtaaacaaaaaatcaa
aaacgatTTATATTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037550XLOC_037550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059674-exon-scaffold_330-1491911889:192412..192436TCONS_00059674-exon-scaffold_330-1491911889:192412..192436Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1510915933:192412..192436TCONS_00059674-exon-scaffold_330-1510915933:192412..192436Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1575043694:192412..192436TCONS_00059674-exon-scaffold_330-1575043694:192412..192436Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1491911889:192855..192946TCONS_00059674-exon-scaffold_330-1491911889:192855..192946Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1510915933:192855..192946TCONS_00059674-exon-scaffold_330-1510915933:192855..192946Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1575043694:192855..192946TCONS_00059674-exon-scaffold_330-1575043694:192855..192946Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1491911889:193628..193653TCONS_00059674-exon-scaffold_330-1491911889:193628..193653Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1510915933:193628..193653TCONS_00059674-exon-scaffold_330-1510915933:193628..193653Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1575043694:193628..193653TCONS_00059674-exon-scaffold_330-1575043694:193628..193653Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1491911889:193897..194048TCONS_00059674-exon-scaffold_330-1491911889:193897..194048Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1510915933:193897..194048TCONS_00059674-exon-scaffold_330-1510915933:193897..194048Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1575043694:193897..194048TCONS_00059674-exon-scaffold_330-1575043694:193897..194048Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1491911889:194311..194879TCONS_00059674-exon-scaffold_330-1491911889:194311..194879Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1510915933:194311..194879TCONS_00059674-exon-scaffold_330-1510915933:194311..194879Clytia hemisphaericaexon
TCONS_00059674-exon-scaffold_330-1575043694:194311..194879TCONS_00059674-exon-scaffold_330-1575043694:194311..194879Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:192412..194879 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.88497e-08	0.0959492	0.210784	0.39433	0	0	0	0	1.14068	0	1.83201	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2.14335	1.95215	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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