TCONS_00059672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059672
Unique NameTCONS_00059672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059672 ID=TCONS_00059672|Name=TCONS_00059672|organism=Clytia hemisphaerica|type=transcript|length=4015bp
GACTATGACGACGACATTATGGGGACGTATCAATTCGACACAACAGATTT
CGATGGTCGGAAGGACGAAAGTGATCATGAAGAGACTGGTGACGAAGATG
GAAAACAAAAAGATGACGAAGAAAAAGATgacgaagaaaagaaaaagaaa
cttgcaaaacaaaataataaagTTGAACCAGTCAGCAAAGAGACCCCAAC
AGGTGCGTCCGACTTCGAATCACAGGACTCGCAAGAGGTACCTTACAAGT
ACAAGACATCTTCAAGGATCATTGAAAGTTTCCAGTCTTTTGGAACACCG
GCTAGTGCCATCAATTCTTCTGATGCACTTTCATCGCAGGGAGGATCGCA
CCAAAAGACTGAATCTACTATGCCTAAAATGgtTGTGTCAGACAGCGAAG
GGGAGGATGACTTGGAACCAACACAAGCTTATAACATGCCAAGTCCTCAA
AAAGATCCTGCCAAAGACAAAGATGGATTCGTTGTTCCTTCAATGCCGCC
TGCACAAGGTTTGAGAGGTAGTCTACCAGGTGCTTCAACCATTGAGCCAA
AAGATGTTTATGATGCAGTAGATGCTGGAACTCAAATGACCGCCTCTTCA
TCCAGCGACGATGAAGTAATCATACGAAATcggaaaacaaagaaaatcat
tCACGAATCTGACGACGAGGAAACGCAGGCGTACGGCGTCGAAAACACCC
AAGCTTACGCAGGAGAGTCTACCCAAGCTTACGCAACCGAAAGCACCCAA
GCATATGCTGGAGAGGCTACGCAGGCGTACGCGGGTGCATCGACGCAAGC
CTACGCTGGAGAAGCTACTCAGGCTTATACTACTGAAAGTACGCAAGCTT
ATGCGGCTGAAAGTACGCAAGCTTATGCGGCTGAAAGTACGCAAGCTTAT
GCGGCTGAAAACACGCAGGCATACGCCGGTGCTTCAACTCAAGCTTACGG
AGAGGCGACACAGGCTTACGGATACGATGGTGAAGCCACGCAAGTCTACA
TTGGAGAAGCATACGGCGATGCGACACAAGCATACGTTGGCGATGACCTA
CCGACAAATGAAGCGATGGAACAGAAAGATGATTACAGCGATGCTACCTT
GTCTGAAGTTGACGAAGATGAAGCAGAACAGCAAAAACAACTCATTGGCG
ATGCAAAACAACCCAACGAACAAGAGCAACATGTAGAACCGGAGTCGATG
AACACCAAGCCACAAAAGCAAGAAAGTCAAAACTCTACATCGACAGCAGG
CTCTCAGAAGTCAGAAAGTCAAGCATCGACTAAATCTAAAGAAGATAGTG
AGGACACTCGACCAAAACGTAAAGGACGACCACGTAAGAAAGATTCACTC
GACAGTAATGACACTAAACCCAAGAAAACGACGTCAAGGCGTGTGACGAC
GAATAAACGAATGAAGACTACACAAAGTATTATTGAACTTTCTGAAGAAC
ATTCTCCTCACACCAACGAGCCTTCTAATACTGAAAATCCAGAGACAAAT
GATTTAGAATTGGACGGAAATGTCGGTCTTGTAAATAGCGAAGAGTCTGT
GCCTCCAAAGAGGGGCCGAGGTCGACGGAAAACTGGAAAGGCTAATGCAG
CACAGAAAACTATCCCTGAACTTCTCAATGCTGGTGTAAATAAAGAAAAG
GGCGACCTTAAAGCGAACTCTGACGAGACGACGAAAAAGACAGTAAATAA
GAGGGGTAAAAATAAACAATCTGCTGCAACCAATGAAACAAAAACTACAG
AAAATTCACCTGAGAACAATGCAACCAATTCTAAGCGAcgtaaagcaaag
aaaagttcACAAGAGCAAGTTTTACAGGAAGAACAAGcgaaagaaattga
agaagTACCTTCTGAAACAAAAACTAATATCGCTGATGAGCCTGTAAAGG
CTTCTAAAACTGGTAGGAGACGTACGAATAAAGGTTCTCAAAGCTTAAAG
GAGGAGCCAGTGGCTGAAAACTCACCGGAAAGTATAGAAGAACCCAAGAA
GACTAAAAGGGGTCGGCCTAAAAAAGGATCACAGGAACCTGTTGTAGAAC
TTGCTCCCATTAATGCTAAGCCTGATATAAAAGCGAAAAGGGGTGGTAAG
AAGGCTAATGATGTAGAGACTTCGATAGAGAATAAAGATACAATTGAAAG
CGACCCGTTGACATCTAACGCGGGTACTAATGCTAAAACGACACGAAAGG
GTCGGAAAGGGAAATGCGATTTTGAGAATAATACTGAGCATGTCGAGCCT
GTGGTGACTGTTACAGAAACTAAACCATCCAGAAAACGGGGTTCTATTTC
ACAGAAAAACGTGAGAGAAGTAGAATCATTAGAAAGCAAAGAAGTTCCAA
CAGAGCAAGGCATTGAAATATCTGCGGACAATTCTCCTAGCGTAGAAGAA
CACTCCAAACCAAAGCGTGGACGAAAAGCGAAAGTTTCGATTGCTCAACC
CGAGGTCCCAGAAGAGCCGCCCCAAAACTCAAGTACGCCTGATATTCAAA
CGCCGTTACCGGTTACGGGGAAACGCTCACGTAAACAGAAGGTATGGTAC
GGGAGAACGTCAATTGAACCAAGTAAAGAAGATGACACAAAGTCCCTTGA
TAGTGCAGCCACAGGAGGAACGAAAGCCAAGCGAGGAAGGAAAAGTAAGG
CTAGTACTCAGGAGACAACGGAAGAAATTACTGCAGCTCCAACACCATCT
TCCGTTTCTAAAGgaaaacaaaagaaagagaaaCCACGCCCTCCAAAAGA
GAAATCACCACCTCCAAAAGAGAAATCATCTCCACCACCTCCAAAAGGAG
ACACAGGGGGAGAGACATCACAAGACGAATTGAACACAAGTCAACTGAGT
ACCGCAAGCAGCTCCTCCATTCGGCGCTCAACACTTTCCGCAAGCAAACC
CAAAGTGGTTTTCACCGGCATCAGTGATAATTCAGTCGAAAAGATTGTTT
CCAGTCTTGGAGGTTCCACAGTGGAGCATGTCGACAAAGCCTCGCATCTT
GTTACAGATAAGGTTCGTCGAACAGTGAAGTTCATGTGTGCGCTTGCGAA
AGGAATTCCTATACTGACACCAGAATGGTTGAAAGCTTCCAAAAGTAACA
ACTCCTTTGTCGATTGTCAGGAGCACATACTGAAAGACGAAGCAGCAGAA
AAACAATATGGTTTCTCTTTACAAGAATCTCTTGTGAAGTCACGGAGTCA
ACCATTGTTGGAAAACAAAAAGATACACATCACCAAATCGGTGAAACCGG
AACCTAAACATATGAAGGAAATGGTTGAATGTTGCGGTGGACAGTACATT
ACAAAGTCAACGAAGCttgctgatgacgtcattgtcaTCTCATGTGATGA
AGACGCAAAGGATCATGGGAAATTTGCTAAGAATGTGATATGTTCCAATG
AACTGTTGCTGACGGGCATCCTCAAGCAACAACTGGACGTGGAACAATAC
AGGCTGAATGCTGGTCAACAACCATCAACAGCGAATGACGGCAAACGAAA
GAGAGCAAGTGTTGCAACTGCTTCAAATGGAAAGAAGTCTAAGAAAAAGT
AGACTAAATCTCAAGGGGCTCCCCTATCACAGCTTTAACGAGTTTCCACT
CTGTTTTCAAAATCTCCGAATCTATTTTAGTAAACTCTTTCAGAAATCTT
CAGCTCTAGAGTTTTCCTTAAATAATACCATTCCAGTCGAAATAACGTTT
GAGAAGTAAAGCTGCCGACCATATGCAAAGAAACTCTCGATTATGACCCT
ATCCTGACGTGTCGACAAAAAAATCGAGCCTTAAAAAGGATTATAAAAAG
AGGCAGAGCATTATGTGTTTTCGTAATATAGATGTGACGTGACGTgactt
ttttaaaaagtattttatttaaatttaatttgttaCTTTGCGAGGGTATG
AAAATGTAGTCTAATATTTTTAGCTTAGCTTTATTACTTACTCACAACTT
ATCTTTATAGAGCTTTCAATGTAAATaacttgtaaacaaaaaatcaaaaa
cgatTTATATTAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_330:181516..194879+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059672 ID=TCONS_00059672|Name=TCONS_00059672|organism=Clytia hemisphaerica|type=transcript|length=13364bp|location=Sequence derived from alignment at scaffold_330:181516..194879+ (Clytia hemisphaerica)
GACTATGACGACGACATTATGGGGACGTATCAATTCGACACAACAGATTT
CGATGGTCGGAAGGACGAAAGTGATCATGAAGAGACTGGTGACGAAGATG
GAAAACAAAAAGATGACGAAGAAAAAGATgacgaagaaaagaaaaagaaa
cttgcaaaacaaaataataaaggTATTTCAGAGTACCATGTGTTTGCACA
GAGACCTGGACACTTGTATGACATTATTATATAGCCGGTGCTTTGAGGAG
GCTATGAAACGTTTGGTCTCCTCAATTTTTTTCGCCGGAAGTACTTTGAG
CTTTATCATAACAAAATATTATAACGAAGAAAAGCTGCACTCACAAATAC
CAACATAATGGGACTTGAAGAATAGTTATAGAGCAGTTGATAAGAAACat
cttttcattttcgtttttattGTGTCTGTCGgaaattcaagttttttttt
ctactaGTTGAACCAGTCAGCAAAGAGACCCCAACAGGTGCGTCCGACTT
CGAATCACAGGACTCGCAAGAGGTACCTTACAAGTACAAGACATCTTCAA
GGATCATTGAAAGTTTCCAGTCTTTTGGAACACCGGCTAGTGCCATCAAT
TCTTCTGATGCACTTTCATCGCAGGGAGGATCGCACCAAAAGACTGAATC
TACTATGCCTAAAATGGTAAATTTTCTCACTCTTTCAGCCTTTTTTAAGG
CGCTTTTTTAACTCTGATGGTAAACATTCTGCTAGATCGTTCCCCTAGCC
TAGATCTTTGGCTTGTGAAATTAATGTAGTATTGGAATAAAGAAGGCTGC
CCAATCACGTGTTTGCGAAATCCTTAGGTATCTCTACGAGAGGTCCAACT
TTCGAACACATTCAGATTACTTTTTTGGGCAAGTCGTTCAATTACTTGAC
ACCGTATTTGAGAACATTTACATTTTAGTAAGATTTATACATCTGTTAGA
TTCCTATGACCATTTGaatgtttattttcaaaaaatttgggtttGACACT
TGTTTGGTTGAAGTGCTCGTCTTGGTTTTTTAACAAAACTGGCCCAACAC
CTTGGACTGAAGACATTGCTCAGCTATTTTACATGTTTGCATTTGGTGCC
GaatcttatttcttttttcaaaggtTGTGTCAGACAGCGAAGGGGAGGAT
GACTTGGAACCAACACAAGCTTATAACATGCCAAGTCCTCAAAAAGATCC
TGCCAAAGACAAAGATGGATTCGTTGTTCCTTCAATGCCGCCTGCACAAG
GTATAAAATCGAACTGTGAACCAAAATAAGGGCTGGACCAAACTGGACAT
CTCCATAAAGAATTTTATGTAGACCGTCGATTCCAGTTTTTATTTTACAC
GTATTAGCCGgtatttttcaaggttttcgtCTTTTCACTTTTGGGAACAG
TTGTTAGCTCTAGCACCGCCaattaaaaagagctttcaaagcATCTTTTC
GATACTAACCAGCATAGTTTATTAAATTCTGCAATTTGATTACAATACAT
TTACTCAGCCATTCCTTTTAGGTTTGAGAGGTAGTCTACCAGGTGCTTCA
ACCATTGAGCCAAAAGATGTTTATGATGCAGTAGATGCTGGAACTCAAAT
GACCGCCTCTTCATCCAGCGACGATGAAGGTAGGGAGGGTTTGCTATGTG
TCATCCTATGCAGAAAATTTCTTCCCATATGCTAAAGCTCTGAACGTCGG
GAAAAACCTACAATATCTGGACGGTTTAGATTACGAAATTTCGCTAAATC
GCGTCAAGGGTATTGCATTGGGAGGCTTGAACCTGGGCCCTCGTTTTCGG
AGATTTTCCGAAATTgttccgctcctttagagctttagcgtgggcgcgTG
GGTGGCAGCCATTCCGCCATCGGAATGTCAGACCAGGAGGTTTGCTCTAT
CCTTAACGTTGGTAAACTTGAGGCTACACCCTTTATTAGAAGTTAACTTT
TCATATCGATTTACAGAGATGATATCGACGTCTTATACAGTGTTTTTTTG
TGTGCGTAAAGAGCTGACCTGAACCAACAACTTTGGCAATGAAATAGATA
CTATTGCTTTCCAATTCTAGTAATCATACGAAATcggaaaacaaagaaaa
tcattCACGAATCTGACGACGAGGAAACGCAGGCGTACGGCGTCGAAAAC
ACCCAAGCTTACGCAGGAGAGTCTACCCAAGCTTACGCAACCGAAAGCAC
CCAAGCATATGCTGGAGAGGCTACGCAGGCGTACGCGGGTGCATCGACGC
AAGCCTACGCTGGAGAAGCTACTCAGGCTTATACTACTGAAAGTACGCAA
GCTTATGCGGCTGAAAGTACGCAAGCTTATGCGGCTGAAAGTACGCAAGC
TTATGCGGCTGAAAACACGCAGGCATACGCCGGTGCTTCAACTCAAGCTT
ACGGAGAGGCGACACAGGCTTACGGATACGATGGTGAAGCCACGCAAGTC
TACATTGGAGAAGTAATGCTCTTTATCTCCTATATTTGCTTCCTACTTTA
ATAAAATGGTTTAAGACATGCTAATGACGCTTGAGAGGCGAAAGTTCGGA
GGTCTGTACATAGTGAAGAATACAAAGACACTGataaaacagtgaaaaaa
aactcttaaaaagtaTTTGAAGATCATTGATTCATTAGCAAAAGActgta
taaaaaaaaaaagaaaaaaggtacaaaTTAAAGCACAAACTAACTAGCGA
GTGACTTGAAATGTCtaagaaatctttatttttccaaTGTCAGTCAACTA
TTCACACTATTTTTTTTGGATGTCGGAAATCTGtgcaaaaaactttcaac
atcCATGAAACCGTATATAAGTAACGGTCCTTCACAGAGAGTATACGtac
aatttttggacctacctgcgtccgtccgttcgtccgtccgtccgtccgtc
tgttaccagcttttctcgagctgtactttatatttttttatgaaattttg
cacactgatgcaatatgacaatacctaaaatgtgacggagcccgattttc
gaaaaaaaatttttccggccgaaaatgccggaaatatgccggaaaaactg
gttttttacattttctcgaattttcatttttagttttttctgattttttt
tgtagaaagatgcgtattcgcaatgctcaaaacatggctgagtctcgatt
tttgagaaatttttttttccggttgaaaatgccggaaatcgccatttttg
cagattttcattagatttttttccttgtatttctatgtttttgacacaaa
aacattattgataacaatgctcaccatcaagcatgattcaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCCTCTCCccttatcaac
aatcaatgatgaatttattgcgttatgcattttcgctaaacgctatattt
tctgactgatttttttctcctcgcattactatctaactttcatcatcagg
taggtccattcagcatctagcttgttataCAACTTTTTATCCATTTCCAT
CAGGCATACGGCGATGCGACACAAGCATACGTTGGCGATGACCTACCGAC
AAATGAAGCGATGGAACAGAAAGATGATTACAGCGATGCTACCTTGTCTG
AAGTTGACGAAGATGAAGCAGAACAGCAAAAACAACTCATTGGCGGTAAA
GGGCGCTTACTTTTACCCATTTAATTTCATAATATGTTAACTTTTTATCT
GTTATAGTTGGGTTATTTCCGACCACTACGCAAGTGGAATGATATTctga
cacttttttcaaaatatgttttcttCTCGTGACAGATATTTCAACAAAGA
AAGTGATTACTATAATTCAATAATGAAAGTGCTTTTTCtcgttttaaaaa
aaagttttccgcaaaaaagaggttttattttgacataagtgattctgttt
catatcagacacgtattttatatcaggacagtgtcttgctattgttatat
tatgcagtcctgctccacatccgtgtcaatccaatgtgaaaaagcttgtg
aattacaATTGATGAGtaggcaaacgatatcactctcatttaaaaacaaa
aatgcttctGGTTATTCTATTTGTCATTAAGCTGTTAGCCCAACGAAACA
CATTtcaattaaaaacaaaacctttaattcttTCTTTGGTTCAGCCTGCA
AGTGTAGACCTCGAATATTGTCGAACTTTGCTGAAACCTGGCATACTTTA
TAACTTGGGGAACACTTTTCGGGAAAAAGTTTTACTTTTCAAGCCTTGGA
TGAGTTTTTCACTACTGCTTTAATAATTTAGCTTCCATATAGTCGAATGA
CTACAGAAGGCACAGTTCACCGAACATGCTGGACTATTTGTTAGGGTTTC
GAAATATGTGGAAATTCAAGTTCTTGTttatatttcaaagtttttgaacc
TTTTTGCAAAAAGGAGGCAACGCTTTATTAAGGTCAGCTTGTAAGCATAC
AGACTTCGAACCTTCGTCTGACTGGCACACTTATTCCTTTGGGAAACCCT
TTTGAGAAGTTGTTTTTGCTTGAGCTTTTTACTACCCAGTGACCAGTGTA
CCGACGCCTATTTGTTAGGGTTTCAACAAATGATCTGTCCTTCTAATTTT
CTCTAGATGCAAAACAACCCAACGAACAAGAGCAACATGTAGAACCGGAG
TCGATGAACACCAAGCCACAAAAGCAAGAAAGTCAAAACTCTACATCGAC
AGCAGGCTCTCAGAAGTCAGAAAGTCAAGCATCGACTAAATCTAAAGAAG
ATAGTGAGGACACTCGACCAAAACGTAAAGGACGACCACGTAAGAAAGAT
TCACTCGACAGTAATGACACTAAACCCAAGAAAACGACGTCAAGGCGTGT
GACGACGAATAAACGAATGAAGACTACACAAAGTATTATTGAACTTTCTG
AAGAACATTCTCCTCACACCAACGAGCCTTCTAATACTGAAAATCCAGAG
ACAAATGATTTAGAATTGGACGGAAATGTCGGTCTTGTAAATAGCGAAGA
GTCTGTGCCTCCAAAGAGGGGCCGAGGTCGACGGAAAACTGGAAAGGCTA
ATGCAGCACAGAAAACTATCCCTGAACTTCTCAATGCTGGTGTAAATAAA
GAAAAGGGCGACCTTAAAGCGAACTCTGACGAGACGACGAAAAAGACAGT
AAATAAGAGGGGTAAAAATAAACAATCTGCTGCAACCAATGAAACAAAAA
CTACAGAAAATTCACCTGAGAACAATGCAACCAATTCTAAGCGAcgtaaa
gcaaagaaaagttcACAAGAGCAAGTTTTACAGGAAGAACAAGcgaaaga
aattgaagaagTACCTTCTGAAACAAAAACTAATATCGCTGATGAGCCTG
TAAAGGCTTCTAAAACTGGTAGGAGACGTACGAATAAAGGTTCTCAAAGC
TTAAAGGAGGAGCCAGTGGCTGAAAACTCACCGGAAAGTATAGAAGAACC
CAAGAAGACTAAAAGGGGTCGGCCTAAAAAAGGATCACAGGAACCTGTTG
TAGAACTTGCTCCCATTAATGCTAAGCCTGATATAAAAGCGAAAAGGGGT
GGTAAGAAGGCTAATGATGTAGAGACTTCGATAGAGAATAAAGATACAAT
TGAAAGCGACCCGTTGACATCTAACGCGGGTACTAATGCTAAAACGACAC
GAAAGGGTCGGAAAGGGAAATGCGATTTTGAGAATAATACTGAGCATGTC
GAGCCTGTGGTGACTGTTACAGAAACTAAACCATCCAGAAAACGGGGTTC
TATTTCACAGAAAAACGTGAGAGAAGTAGAATCATTAGAAAGCAAAGAAG
TTCCAACAGAGCAAGGCATTGAAATATCTGCGGACAATTCTCCTAGCGTA
GAAGAACACTCCAAACCAAAGCGTGGACGAAAAGCGAAAGTTTCGATTGC
TCAACCCGAGGTCCCAGAAGAGCCGCCCCAAAACTCAAGTACGCCTGATA
TTCAAACGCCGTTACCGGTTACGGGGAAACGCTCACGTAAACAGAAGGTA
TGGTACGGGAGAACGTCAATTGAACCAAGTAAAGAAGATGACACAAAGTC
CCTTGATAGTGCAGCCACAGGAGGAACGAAAGCCAAGCGAGGAAGGAAAA
GTAAGGCTAGTACTCAGGAGACAACGGAAGAAATTACTGCAGCTCCAACA
CCATCTTCCGTTTCTAAAGGTGAgtatgaataaaaataattgaCGAAACT
TTCCCTCTCTGCTATCTTTTTGTGAAATGTAGGAAAGAAGATAGCAATTT
CACCAATCAGTAagtacagttgacactctcccATTCGAATTTTTTAAGGG
GAATGAAATGTTTATCGAATACGGGAGcgtgtcgaatagtagagcgtcgt
gctTCTCGTTGACGatgaatttcaatattataGAATAATGGAGTGAACCA
AATAGTAGAACGTGTCAAATGTAATGGCATAAATCTTCATTTATTTTAAA
CTTCGTGttaggaaaacaaaagaaagagaaaCCACGCCCTCCAAAAGAGA
AATCACCACCTCCAAAAGAGAAATCATCTCCACCACCTCCAAAAGGAGAC
ACAGGGGGAGAGACATCACAAGACGAATTGAACACAAGTCAACTGAGTAC
CGCAAGCAGCTCCTCCATTCGGCGCTCAACACTTTCCGCAAGCAAACCCA
AAGTGGTTTTCACCGGCATCAGTGATAATTCAGTCGAAAAGGTTAGATTC
GTTTGTTGTGTGTTTCGGTATAGGCTTGACTGAAgtccggggggggcact
cgatttctaaacgacggcatgtgccgccaaaaatttggctttcataatcg
gacccttacagtgcagctcttgagtattgaaaaggtacccttacattGCA
TTTTATCGAACGTTtgtgacccttacagtgcaatttgttttcatatctta
ttttgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTC
CAGAAACatgtcaggaatcaccaaaaaaaagccCCACCCTCAGGAAGATG
GGGACCccctcaaatccataatggcggtagggtacttttttctacaatta
atcaaggagggacccttgataactgattttgaattgttttcaaatgtcaa
aaataactagacAGGGAGATTCCTCTCGAagagtagataaagaaaatggg
gtcacttttgaaatttggaccacgTGGTCCCGAGATATGGcctctaaagt
ccaaaaaatgacgattttgatgacgtcagcttTTTTACTGAGAGCAATAA
ATTGGAACATCGACAAGCTCATCATGTAACCCTGATTAtgggctttcaga
aaaatatatggtttaatATATTTAGATCAGCCGTTGGCGAGATATAACGa
ttttgaaatcgaaaaaaagtgcTAACTCAGCAAAAATAAGCGTTTTAAAC
GNTATCTTTTTGTGAAATGTAGGAAAGAAGATAGCAATTTCACCAATCAG
TAagtacagttgacactctcccATTCGAATTTTTTAAGGGGAATGAAATG
TTTATCGAATACGGGAGcgtgtcgaatagtagagcgtcgtgctTCTCGTT
GACGatgaatttcaatattataGAATAATGGAGTGAACCAAATAGTAGAA
CGTGTCAAATGTAATGGCATAAATCTTCATTTATTTTAAACTTCGTGtta
ggaaaacaaaagaaagagaaaCCACGCCCTCCAAAAGAGAAATCACCACC
TCCAAAAGAGAAATCATCTCCACCACCTCCAAAAGGAGACACAGGGGGAG
AGACATCACAAGACGAATTGAACACAAGTCAACTGAGTACCGCAAGCAGC
TCCTCCATTCGGCGCTCAACACTTTCCGCAAGCAAACCCAAAGTGGTTTT
CACCGGCATCAGTGATAATTCAGTCGAAAAGGTTAGATTCGTTTGTTGTG
TGTTTCGGTATAGGCTTGACTGAAGTCCGNCAAATCTACTCTGAATTATT
ATGACTGGAAGAAAACTATTATTCAGACTATTACTTTGCAATTGTGAAAT
CCCTTGTATAATCAGCAAAAGCATTCCACTTGCATCTTTCATGTTCATTA
CTATGTGCTCATCTTTTTTAGATTGTTTCCAGTCTTGGAGGTTCCACAGT
GGAGCATGTCGACAAAGCCTCGCATCTTGTTACAGATAAGGTATACTTCT
CTCCCGAACGATGCGAATTTCAAGTTGACACTTCCTAATTTGGTCTTTAA
GGGGATTAGGATTTTCATCAAATACTGGAGTGTATCGAATAGTTGAAATT
CCCCCTAACCCGTTTAGCACCAATAAATATCAATTTATAGAGGCTGTGGA
CGTTGTTTTAACCTGAAGCTCTCTCAAAGGAATCGTCGATATTTTTCTGC
TTTGGATTGATTCGAATTTTATCCACACTGCTTTCGACATTTCAAAACAT
CTTCTCTTATACGATTTTTCTTTTCTACCAGGTTCGTCGAACAGTGAAGT
TCATGTGTGCGCTTGCGAAAGGAATTCCTATACTGACACCAGAATGGTTG
AAAGCTTCCAAAAGTAACAACTCCTTTGTCGGTACGTTTAGTTTATTTGG
TCTGCTTCGAAAAGAAATATTTGCGTCAAAATATTGGAGTAGGAGGTTTA
GTGTCTATAAGTAAAAAACGGAGACGATCTGATGGGATCTATTAACCGTG
AAAGGGATGGCCAAGATATATTTCAGGCTGTTAAAAAGACTCGTTAAATG
CTTTTAAAGTGTGGGGCTGGGAAAGTATTGATCCATGTAAACGATTGGGA
AAGGGTACTGTGGTTACCTCTAATGCTTACCTGCGAATGAATATTGTTCC
CTTCTAGATTGTCAGGAGCACATACTGAAAGACGAAGCAGCAGAAAAACA
ATATGGTTTCTCTTTACAAGAGTAAGTAATAATAAttaataatgctatac
aagttcgcaggccaccatgcgagcacatgggcctctatgaaccgctcttt
gttcNTTTTCTGCTGAGAATATCCTATAATAATGTTAAGTAAACCTAGGT
CTCAAACAAAGTTCGAACAAAATTAGAAATAttcagatgaaaaaatttct
tttattttgcctaaaaaatgagtttattttacaaaaaataaggtTTGTTT
TTGCGTTCGAACTtttagtcaggtagaattaggtcATAAACCGCCAAAAC
CGGGACAAGAATGGTGTacagatgaaattttgcacagaggtccagaaaca
tgtcaggaatcaccaaaaaaaagccCCACCCTCAGGAAGATGGGANAACA
ATATGGTTTCTCTTTACAAGAGTAAGTAATAATAAttaataatgctatac
aagttcgcaggccaccatgcgagcacatgggcctctatgaaccgctcttt
gttcgAGTAAGTTCTATGTGCTGTTTGAATTGTTCAAATTTGCCATTAGA
AGGTCAAGTTTTTCAAGAGCAAACTATTACTCTAAtatgatttagatttt
ataacATCGTTTTGTAAACGTTTCAACTGTACTCGATTGTATAAAGAAGC
CTTACATAGCCGTcaagaaaaattaacatttgcatttttttgcagtactc
aaagtttcacggctatatgactATCATGAGCTACTAAACGTGATtgcatt
tttttctcaataccATAAGTATTGTAAAACGTGCATAGTTTAATATGGTC
AAATGTTGATACATTATGTCGCTGTGTTCTTATCCTTAGATCTCTTGTGA
AGTCACGGAGTCAACCATTGTTGGAAAACAAAAAGATACACATCACCAAA
TCGGTGAAACCGGAACCTAAACATATGAAGGGTATGATAGTTTAACACTT
TTTTTTAGATTATAAACACGAccatggctccgactggggttctatGTCCC
AGgtccccccgccaaatttaggtcccccctgagaacaaggtcccccagcc
tgataaaattttaggtcccagtataggggaaaaattttatggcattcaca
atgctctatttacatgtgttcacttttagagaatgcaatagaatgtcttc
atttttgcattttaaggatcagatcacactttgcatgaaaacataaaggt
ttagagaaattaaaaaccaacaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGTGGGAGCCATGACGATGCT
CAAAAGTTATTGCCTAATGAAGAAACGCCTAGGCTTGTAGTTTccatttt
ttcaatgtttgacAATGCTCATTTTGTTTACActaaatgacatcattttc
cGATTTGTTTAGAAATGGTTGAATGTTGCGGTGGACAGgtttttcattct
ttcatttcatttcttttcttcTAGTTAAAAGGCAAATCCTAACGCTTTCC
TTCGAACCCTTTCTAATAAGCCTCCTCTGCTTTCATCAATAGCACTTTTT
GCTGTGTTCCCAAACTTGCACTAATTAGATTTCAAGGGTTTTGAGTTTTA
AGGGTTGAATCTTATTGactcttttttataaagaaTAGAAATAGTCAAAT
TTATCAGAAATCTGTTTTTAATTCATTATAGTACATTACAAAGTCAACGA
AGCttgctgatgacgtcattgtcaTCTCATGTGATGAAGACGCAAAGGAT
CATGGGAAATTTGCTAAGAATGTGATATGTTCCAATGAACTGTTGCTGAC
GGGCATCCTCAAGCAACAACTGGACGTGGAACAGTAAGGAAGAATTATTG
GCTcttttagaaaagaaaagatttcctTACTAGTTTCGAAAANAGTAAGG
AAGAATTATTGGCTcttttagaaaagaaaagatatcTTTACTAGTTTCGA
AAACCTTTAAGCGTTTTTTATAAGTTCAGATAAAGTGATGTAGTGATGCT
TTACtgagaaaattgacttttattgtAAAAGCAACCTCATGCATGCGAGT
CATacatggcaaaaatgatcatGGTTTGATCTTTCTTTCTTCCAGATACA
GGCTGAATGCTGGTCAACAACCATCAACAGCGAATGACGGCAAACGAAAG
AGAGCAAGTGTTGCAACTGCTTCAAATGGAAAGAAGTCTAAGAAAAAGTA
GACTAAATCTCAAGGGGCTCCCCTATCACAGCTTTAACGAGTTTCCACTC
TGTTTTCAAAATCTCCGAATCTATTTTAGTAAACTCTTTCAGAAATCTTC
AGCTCTAGAGTTTTCCTTAAATAATACCATTCCAGTCGAAATAACGTTTG
AGAAGTAAAGCTGCCGACCATATGCAAAGAAACTCTCGATTATGACCCTA
TCCTGACGTGTCGACAAAAAAATCGAGCCTTAAAAAGGATTATAAAAAGA
GGCAGAGCATTATGTGTTTTCGTAATATAGATGTGACGTGACGTgacttt
tttaaaaagtattttatttaaatttaatttgttaCTTTGCGAGGGTATGA
AAATGTAGTCTAATATTTTTAGCTTAGCTTTATTACTTACTCACAACTTA
TCTTTATAGAGCTTTCAATGTAAATaacttgtaaacaaaaaatcaaaaac
gatTTATATTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037550XLOC_037550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059672-exon-scaffold_330-1491911889:181516..181687TCONS_00059672-exon-scaffold_330-1491911889:181516..181687Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:181516..181687TCONS_00059672-exon-scaffold_330-1510915933:181516..181687Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:181516..181687TCONS_00059672-exon-scaffold_330-1575043694:181516..181687Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:181973..182181TCONS_00059672-exon-scaffold_330-1491911889:181973..182181Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:181973..182181TCONS_00059672-exon-scaffold_330-1510915933:181973..182181Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:181973..182181TCONS_00059672-exon-scaffold_330-1575043694:181973..182181Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:182639..182765TCONS_00059672-exon-scaffold_330-1491911889:182639..182765Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:182639..182765TCONS_00059672-exon-scaffold_330-1510915933:182639..182765Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:182639..182765TCONS_00059672-exon-scaffold_330-1575043694:182639..182765Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:183037..183144TCONS_00059672-exon-scaffold_330-1491911889:183037..183144Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:183037..183144TCONS_00059672-exon-scaffold_330-1510915933:183037..183144Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:183037..183144TCONS_00059672-exon-scaffold_330-1575043694:183037..183144Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:183586..183977TCONS_00059672-exon-scaffold_330-1491911889:183586..183977Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:183586..183977TCONS_00059672-exon-scaffold_330-1510915933:183586..183977Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:183586..183977TCONS_00059672-exon-scaffold_330-1575043694:183586..183977Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:185169..185310TCONS_00059672-exon-scaffold_330-1491911889:185169..185310Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:185169..185310TCONS_00059672-exon-scaffold_330-1510915933:185169..185310Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:185169..185310TCONS_00059672-exon-scaffold_330-1575043694:185169..185310Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:186272..187834TCONS_00059672-exon-scaffold_330-1491911889:186272..187834Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:186272..187834TCONS_00059672-exon-scaffold_330-1510915933:186272..187834Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:186272..187834TCONS_00059672-exon-scaffold_330-1575043694:186272..187834Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:190817..191046TCONS_00059672-exon-scaffold_330-1491911889:190817..191046Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:190817..191046TCONS_00059672-exon-scaffold_330-1510915933:190817..191046Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:190817..191046TCONS_00059672-exon-scaffold_330-1575043694:190817..191046Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:191237..191305TCONS_00059672-exon-scaffold_330-1491911889:191237..191305Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:191237..191305TCONS_00059672-exon-scaffold_330-1510915933:191237..191305Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:191237..191305TCONS_00059672-exon-scaffold_330-1575043694:191237..191305Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:191597..191696TCONS_00059672-exon-scaffold_330-1491911889:191597..191696Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:191597..191696TCONS_00059672-exon-scaffold_330-1510915933:191597..191696Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:191597..191696TCONS_00059672-exon-scaffold_330-1575043694:191597..191696Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:191973..192036TCONS_00059672-exon-scaffold_330-1491911889:191973..192036Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:191973..192036TCONS_00059672-exon-scaffold_330-1510915933:191973..192036Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:191973..192036TCONS_00059672-exon-scaffold_330-1575043694:191973..192036Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:192855..192946TCONS_00059672-exon-scaffold_330-1491911889:192855..192946Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:192855..192946TCONS_00059672-exon-scaffold_330-1510915933:192855..192946Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:192855..192946TCONS_00059672-exon-scaffold_330-1575043694:192855..192946Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:193628..193653TCONS_00059672-exon-scaffold_330-1491911889:193628..193653Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:193628..193653TCONS_00059672-exon-scaffold_330-1510915933:193628..193653Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:193628..193653TCONS_00059672-exon-scaffold_330-1575043694:193628..193653Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:193897..194048TCONS_00059672-exon-scaffold_330-1491911889:193897..194048Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:193897..194048TCONS_00059672-exon-scaffold_330-1510915933:193897..194048Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:193897..194048TCONS_00059672-exon-scaffold_330-1575043694:193897..194048Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1491911889:194311..194879TCONS_00059672-exon-scaffold_330-1491911889:194311..194879Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1510915933:194311..194879TCONS_00059672-exon-scaffold_330-1510915933:194311..194879Clytia hemisphaericaexon
TCONS_00059672-exon-scaffold_330-1575043694:194311..194879TCONS_00059672-exon-scaffold_330-1575043694:194311..194879Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:181516..194879 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.52094	3.75499	1.4278	0.972829	12.0741	9.16362	4.56602	5.1666	2.89856	3.73623	3.19969	2.47392	2.2473	1.91214	2.96412	3.87963	4.64293	4.61182	1.32285	1.5761	2.09543	2.51892	4.26981	3.94504	5.39437	5.59143	1.1193	0.807348	4.14881	4.23226
Blast
[Close]
BLAST of TCONS_00059672 vs. Swiss-Prot (Human)
Match: MDC1 (Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 1.184e-42
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 1 
Query: 2899 PKVVFTGISDNSVEKIVSSLGGSTVEHVDKASHLVTDKVRRTVKFMCALAKGIPILTPEWLKASKSNNSFVDCQEHILKDEAAEKQYGFSLQESLVKSRSQPLLENKKIHITKSVKPEPKHMKEMVECCGGQYITKSTK-LADDVIVISCDEDAKDHGKFAKNV---ICSNELLLTGILKQQLDVEQYRLNAGQQPST 3480
            PKV+FTG+ D   E+ V +LGGS      +ASHLVTD++RRTVKF+CAL +GIPIL+ +WL  S+    F+   E+++ D   EK +GFSLQ++L ++R + LLE  +I++T  V+P P  M E++ CCGG Y+    +      +VI+C +D   H      V   + S E LLTG+LKQ+   E + L+  +  ST
Sbjct: 1893 PKVLFTGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFP-HCSIPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLEMSST 2089
The following BLAST results are available for this feature:
BLAST of TCONS_00059672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDC11.184e-4241.92Mediator of DNA damage checkpoint protein 1 OS=Hom... [more]
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