TCONS_00059666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059666
Unique NameTCONS_00059666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059666 ID=TCONS_00059666|Name=TCONS_00059666|organism=Clytia hemisphaerica|type=transcript|length=1108bp
TCTACTCAAATGGTTGAAGTAACTGTAGAATGAGTGCTCTCCCCCGGAAA
GTCTGTAAATCGTGTGTACTTCTGCAAAAAACTTTGCCACCTATAAAATA
GATCACAAAAATGAACGGCAAGCACATTCAACTATCCATCACTGAAGAAG
AAAACCAACACAAGGGAACAACTTCCACGAAGAAACACAACAATTAGAAT
CATGAAGACTTTCATCGTGTTAATGTTCATTGGCATGGCAACAGCCTGGG
TCAAAGAGATGGAAAACTCAGCTTTGTACCAAGGAGACATCCTTCTCGAT
CCCGATGAGGACGAGCGTGGTTTGAACGCTACCAACAAGAACACGTTTGC
CAGTATTCGTGGTGGAAGGTGGCCAGGAGCGAGAGTCCCATTCATCTTAC
ACAGAAGTTTGAGTCAAGCAGGTGTGAATGCAATTTACGCTGCTATTAAT
GACTTTCACAAATACACCTGTCTTCGATTCCAAAAACGGACCAACGAACC
ATCATATATCCTCTTTTTCAAAGGCGACGGATGCTTTTCACCAGTAGGAT
ACCGTTATGGACGTCAAAACGATGTTTCCATTGGCTACGGATGCGAATCT
AAAGGAACTGCCATCCATGAAATCGGTCACTCCATTGGACTTCATCACGA
GCAGAACCGACCAGACCGTGACAACTTTATTAGTATCAACTGGAACAACA
TCGAACGGTCCATGCAGTACAACTTCAACAAACAACCTGCACACAACATC
GACTCAAAAGGCACTGGTTATGATTACTACTCCATCATGCATTACGACAA
AGGAGCATTCGCTATGCGATATGGTAAAATCACCATGGTAACCAGAGATC
CAAACATGCAAAATGTCATTGGTCGTGGCAACGGGTTCAGCAAAACTGAT
GTTATCCAAATCAATAGAATGTACTGCAAATAATTTTTACCTACAAAGGA
AAATTACTAATTCGAGATACAACACTGGTTATgtcgtaaaaaaaaacaat
agttTCCACTGATCCGCTTGTAATGTTTGAATAAGCTTAAATAGTGTTTG
AAAGAAACTTATAAAACGAGAACATTTTGTGCTTTTTATTTCCTGGCTTA
CTTCTCCG
Run BLAST on NCBI

transcript from alignment at scaffold_330:110200..113757+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059666 ID=TCONS_00059666|Name=TCONS_00059666|organism=Clytia hemisphaerica|type=transcript|length=3558bp|location=Sequence derived from alignment at scaffold_330:110200..113757+ (Clytia hemisphaerica)
TCTACTCAAATGGTTGAAGTAACTGTAGAATGAGTGCTCTCCCCCGGAAA
GTCTGTAAATCGTGTGTACTTCTGCAAAAAACTTTGCCACCTATAAAATA
GATCACAAAAATGAACGGCAAGCACATTCAACTATCCATCACTGAAGAAG
AAAACCAACACAAGGGAACAACTTCCACGAAGAAACACAACAATTAGAAT
CATGAAGACTTTCATCGTGTTAATGTTCATTGGCATGGCAACAGCCTGGG
TCAAAGAGATGGAAAGTAAGGCATCACACATTCAAACACTTCAGATCCTT
CATCACCAGAACTTTTTTGCTTGATTTACTTTAAGTTGCCCGCATCCCTG
ATATAGTTTAATCATAACAAAACCTTTCAGATAGGATACTAGCAGTCTAG
TTCGTCTACATGTGATATTTAAAGTCTTATTTCCTAGATAAGGTTTTAAA
GAATTCTGTTAAAAGTAGTTTTTCCTTATAACGATTGTCTGAATCAGAAC
GCATACTTAACAACATTATCAAAGTTCACAGAAGAAATAATGTAAAATAA
CACAAACCGATAATCCCATCTCTTTCAGACTCAGCTTTGTACCAAGGAGA
CATCCTTCTCGATCCCGATGAGGACGAGCGTGGTTTGAACGCTACCAACA
AGAACACGTTTGCCAGTATTCGTGGTGGAAGGTGGCCAGGAGCGAGAGTC
CCATTCATCTTACACAGAAGTTTGAGTCAAGCAGGTGTGAATGCAATTTA
CGCTGCTATTAATGACTTTCACAAATACACCTGTCTTCGATTCCAAAAAC
GGACCAACGAACCATCATATATCCTCTTTTTCAAAGGCGACGGGTAAGTT
GTAGTACAGTAACTTTGTGGAAGTAGCCTAAATCAAATAGAAATGTACTA
AGCTCACAACTGCTAATatcttcaaaacattttttaacgtATCTTCTACC
ATTGGCTTACAcaacattttaaaacaaaaagacaaactACTTCCCTCCCT
TTTGGTACTGCGCGAGCACAAATTTTGAGAGATTCTTTTgttaattctgc
tttgtcagcatagaggtGCGCCTCCTCTCGATATCACAAAAACGAataag
tactagtaatcgtatggttaggagtgcaattaacgattaatcacgagtaa
caaaggagaaaatagtaatttgcacgagtccgaaggacgagtgcaaatta
cggtattttctcctttgttacgagtaatcgtcagtaaataatcattagta
aatcatagtttttttagaaaaaggggaaatttttgacattcgaaTTGCAA
TGCAACTTATGTACACAAAGcgaatttctttgttcttttttatattaaag
aaaaaaatgtctttgttttttattatatagtaaaaaaagtctctgacaca
ggacttgggagagaaaagaataaggggacaaaagggtccccccgccgaag
agtgcaaaaagaggtaatagtgcaattaacgattaatcgcactcctctaa
accaatcagattcgagtaattttgcacggctgacgattataTCTTTAATC
GTCCTTTTTCGTTCTCCATACTTTAAAATCTCAATCTTAGGCAAAAACTA
TGAATCTGCATAATAAGCGCTGCAAAATCTGTTCTTCCTTTAGATGCTTT
TCACCAGTAGGATACCGTTATGGACGTCAAAACGATGTTTCCATTGGCTA
CGGATGCGAATCTAAAGGAACTGCCATCCATGAAATCGGTCACTCCATTG
GTAAGTGAGGAGTTTCTTTTTCTTGAGAATTGCATGCTTTGAAAATTCAT
TTAACACGCTCAATAAAGGGCAGGCAACGTCATGTCTCTCATCTCTTCAG
AGCTCAAAACCATTTTTTCTAGAGTAGACTCAAAGTTGATCAAAGAGTCA
TAGGTTTCATCAAATTGGAACATCACTCAACCAACAACATTCGTTTTACG
GAGAGAGAATTTAAACGAGTGTTCAAACGTTTTATACATCAATCCAGTGA
GCTTTCTCAACCTCTCAAAATTCTTCCTTGACAGCCTTTGAATTTACCCT
TAGGAACCCTCTCAACCTCTCAAAATTCTTCATTaacagtttttgacttt
ttcgccCTTAGGACTTCATCACGAGCAGAACCGACCAGACCGTGACAACT
TTATTAGTATCAACTGGAACAACATCGAACGGTCCATGCAGTACAACTTC
AACAAACAACCTGCACACAACATCGACTCAAAAGGTTGAACCCTCACTTG
TCATAAAGTTTTACAGGGGTTTTACTACTAAGCCAATGGCATCATAGTGA
GACAAAATTAAAACCTAATCTATCAGCCCAGAGCCAGAGAGGAACCAACC
ATATAACAATGAGTCTCATGCAACCCACTTAACGATTCATAAATCCCAGA
AAATTTACGCCAACAAACAATCTACTCACAACATCGCCACCATCACCTTC
TTAGCCAAATATTAAAATCACCTTCTTAGCCAAATATTAAAATCACCTTC
TTAGCCAAATATTAAAGGCTACTGAATAGTTTGAATGTAATTTGTTACTG
CTCATTTTTCATCAGACTACCCCNTTTACCCTTAGGAATCCTCTCAACCT
CTCAAAATTCTCCCTTGACAGCCTTTGAATTTACCCTTAGGAATCCTCTC
AACCTCACAAAATTCTTCCTTgacagtttttgactttttcgccCTTAGGA
CTTCATCACGAGCAGAACCGACCAGACCGTGACAACTTTATTAGTATCAA
CTGGAACAACATCGAACGGTCCATGCAGTACAACTTCAACAAACAACCTG
CACACAACATCGACTCAAAAGGTTGAACCCTCACTTGTCATAAAGTTTTA
CAGGGGTTTTACTACTAAGCCAATGGCATCATAGTGAGACAAAATTAAAA
CCTAATCTATCAGCCCAGAGCCAGAGAGGAACCAACCATATAACAATGAG
TCTCATGCAACCCACTTAACGATTCATAAATCCCAGAAAATTTACGCCAA
CAAACAATCTACTCACAACATCGCCACCATCACCTTCTTAGCCAAATATT
AAAATCACCTTCTTAGCCAAATATTAAAATCACCTTCTTAGCCAAATATT
AAAGGCTACTGAATAGTTTGAATGTAATTTGTTACTGCTCATTTTTCATC
AGACTACCCCACATTAACCAGTCCTCATTATAATCATCCAACAATATTCG
TTCCCTTTAGGCACTGGTTATGATTACTACTCCATCATGCATTACGACAA
AGGAGCATTCGCTATGCGATATGGTAAAATCACCATGGTAACCAGAGATC
CAAACATGCAAAATGTCATTGGTCGTGGCAACGGGTTCAGCAAAACTGAT
GTTATCCAAATCAATAGAATGTACTGCAAATAATTTTTACCTACAAAGGA
AAATTACTAATTCGAGATACAACACTGGTTATgtcgtaaaaaaaaacaat
agttTCCACTGATCCGCTTGTAATGTTTGAATAAGCTTAAATAGTGTTTG
AAAGAAACTTATAAAACGAGAACATTTTGTGCTTTTTATTTCCTGGCTTA
CTTCTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037546XLOC_037546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059666-exon-scaffold_330-1491911889:110200..110464TCONS_00059666-exon-scaffold_330-1491911889:110200..110464Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1510915933:110200..110464TCONS_00059666-exon-scaffold_330-1510915933:110200..110464Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1575043694:110200..110464TCONS_00059666-exon-scaffold_330-1575043694:110200..110464Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1491911889:110778..111042TCONS_00059666-exon-scaffold_330-1491911889:110778..111042Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1510915933:110778..111042TCONS_00059666-exon-scaffold_330-1510915933:110778..111042Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1575043694:110778..111042TCONS_00059666-exon-scaffold_330-1575043694:110778..111042Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1491911889:111843..111949TCONS_00059666-exon-scaffold_330-1491911889:111843..111949Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1510915933:111843..111949TCONS_00059666-exon-scaffold_330-1510915933:111843..111949Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1575043694:111843..111949TCONS_00059666-exon-scaffold_330-1575043694:111843..111949Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1491911889:112311..112433TCONS_00059666-exon-scaffold_330-1491911889:112311..112433Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1510915933:112311..112433TCONS_00059666-exon-scaffold_330-1510915933:112311..112433Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1575043694:112311..112433TCONS_00059666-exon-scaffold_330-1575043694:112311..112433Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1491911889:113410..113757TCONS_00059666-exon-scaffold_330-1491911889:113410..113757Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1510915933:113410..113757TCONS_00059666-exon-scaffold_330-1510915933:113410..113757Clytia hemisphaericaexon
TCONS_00059666-exon-scaffold_330-1575043694:113410..113757TCONS_00059666-exon-scaffold_330-1575043694:113410..113757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:110200..113757 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0148942	0	0	0.0140181	0.0507366	0.079165	0.0554253	0.151037	0.559746	0.166456	1.07609	1.19021	1.15778	0.833663	0.296251	0.273283	160.335	215.131	1.38632	0.837494	304.882	324.791	305.617	306.045	0.1443	0.0385001	0.277409	0.952038
Blast
[Close]
BLAST of TCONS_00059666 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.663e-35
Identity = 82/235 (34.89%), Postives = 127/235 (54.04%), Query Frame = 1 
Query:  274 LYQGDILLDPDEDERGLNATNKNTFASIRGGRWPGARVPFILHRSLSQAGVNAIYAAINDFHKYTCLRFQKRTNEPSYILFFKGDGCFSPVGYRYGRQNDVSIGYGCESKGTAIHEIGHSIGLHHEQNRPDRDNFISINWNNIERSMQYNFNKQPAHNIDSKGTGYDYYSIMHYDKGAFAMRYGKITMVTRDPNMQNVIGRGNGFSKTDVIQINRMY-CK*FLPTKENY*FEIQH 975
            L++GDI LD         A  +N+    +  RWP   +P++L  SL       I  A   +   TC+ F+    E +YI  FKG GC+S VG R   + ++SIG  C+   T  HE  H++G  HEQ+R DRD+++ I W+ I    ++NFN       DS    YDY S+MHY K AF     + T+VTR  + ++VIG+   FS +D++++N++Y C   L   ++  FE+++
Sbjct:   48 LFEGDIRLD--------RAQIRNSIIGEKY-RWPHT-IPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELEN 271
The following BLAST results are available for this feature:
BLAST of TCONS_00059666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B1.663e-3534.89Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
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