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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059660 ID=TCONS_00059660|Name=TCONS_00059660|organism=Clytia hemisphaerica|type=transcript|length=1096bp
GAACGAGGGGTCGATAATTTCTCAATAAAACGTTTAGTTAACGAGTTGAC
GAGGTATTTAGGAAAACCATTCCAAGATGccatttctttaattttcttga
tttcagcAGGTAGCCTATTAGGTGAACAAATTCGAGTAGCACGAACAATT
AAACTACGAAACCAAGAAATGCGATGTTGCCACGGCACGAAACTATCAAA
GTTGACATAAAGTCCTGTATTTGTTGGTTTTCTATACACTTGAAATTCGT
CAGTGGGCATGTCAATGTCAAGAAAATGAGGAGTCTCGTTTTTAAATTCA
TCAACAGTGAACTtaagatttttatcaaatttctcaAAGGCTTTATGAAC
CTTTTTGACATCTTTCGGTTTGATTGCCAAAAGCGTGTCATCCACATAAC
GACCATAAAATTTCAATGTCCCTTTGGTTATAAGAGGACGAACGACTTTT
TCTTCGAGTTCTGTCATGATCAAATTAGCTAGTACTGGACCAAGGGATGA
ACCCATACTAACTCCGTCACATTGTTCATAAAGGACATTATTACAACTAA
AAGCTGTTTTGGTGCAGGTGTCCCggatcaattttttgagagTTCTTTCT
TGTAGGGTAGTACCAATACGcttctctttgaaaactcgtCGACAAATGAT
ATTTAGTGTTCGTTTGAGAGGTACATTAGTAAATAAAGACTCAACGTCAA
ATGAAACAAATTGgtagccattttgaaaaagttcagGAGGTATGTTCTGA
ATTTTCGAAACAGCATCGTAGGAATCTTTGAAAGTGAATTCGTTTACAGT
AAGTGGATGGAGAAGATTGGTTAAATATTCACCAACTTTGTAGTGGGAAG
TGCCTGTCGTGTCGACAATAGGACGGAATTTCGGAATGTTTTCATAACGC
TTATGAATTTTAGGAAGACCATGTGCACGAGCCGGTTTAGAATTTTGTGG
ACGCATATATCATCGTAGTCAGAGGCGgtgatttcatttcttttcgTTAG
CTTGAGGAGATATCTCTGCAGTGACGTCATTCTGGTGACAGAAGGGTCAG
ATTGTAGAACTTTGAACTTATTTCGATCAGAGAAAAGCGACTTTAG Run BLAST on NCBI protein sequence of TCONS_00059660-protein >TCONS_00059660-protein ID=TCONS_00059660-protein|Name=TCONS_00059660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MRPQNSKPARAHGLPKIHKRYENIPKFRPIVDTTGTSHYKVGEYLTNLLH
PLTVNEFTFKDSYDAVSKIQNIPPELFQNGYQFVSFDVESLFTNVPLKRT
LNIICRRVFKEKRIGTTLQERTLKKLIRDTCTKTAFSCNNVLYEQCDGVS
MGSSLGPVLANLIMTELEEKVVRPLITKGTLKFYGRYVDDTLLAIKPKDV
KKVHKAFEKFDKNLKFTVDEFKNETPHFLDIDMPTDEFQVYRKPTNTGLY
VNFDSFVPWQHRISWFRSLIVRATRICSPNRLPAEIKKIKEMASWNGFPK
YLVNSLTKRFIEKLSTPR Run BLAST on NCBI transcript from alignment at scaffold_33:33655..34750 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059660 ID=TCONS_00059660|Name=TCONS_00059660|organism=Clytia hemisphaerica|type=transcript|length=1096bp|location=Sequence derived from alignment at scaffold_33:33655..34750 (Clytia hemisphaerica)
CTAAAGTCGCTTTTCTCTGATCGAAATAAGTTCAAAGTTCTACAATCTGA
CCCTTCTGTCACCAGAATGACGTCACTGCAGAGATATCTCCTCAAGCTAA
cgaaaagaaatgaaatcacCGCCTCTGACTACGATGATATATGCGTCCAC
AAAATTCTAAACCGGCTCGTGCACATGGTCTTCCTAAAATTCATAAGCGT
TATGAAAACATTCCGAAATTCCGTCCTATTGTCGACACGACAGGCACTTC
CCACTACAAAGTTGGTGAATATTTAACCAATCTTCTCCATCCACTTACTG
TAAACGAATTCACTTTCAAAGATTCCTACGATGCTGTTTCGAAAATTCAG
AACATACCTCctgaactttttcaaaatggctacCAATTTGTTTCATTTGA
CGTTGAGTCTTTATTTACTAATGTACCTCTCAAACGAACACTAAATATCA
TTTGTCGacgagttttcaaagagaagCGTATTGGTACTACCCTACAAGAA
AGAActctcaaaaaattgatccGGGACACCTGCACCAAAACAGCTTTTAG
TTGTAATAATGTCCTTTATGAACAATGTGACGGAGTTAGTATGGGTTCAT
CCCTTGGTCCAGTACTAGCTAATTTGATCATGACAGAACTCGAAGAAAAA
GTCGTTCGTCCTCTTATAACCAAAGGGACATTGAAATTTTATGGTCGTTA
TGTGGATGACACGCTTTTGGCAATCAAACCGAAAGATGTCAAAAAGGTTC
ATAAAGCCTTtgagaaatttgataaaaatcttaAGTTCACTGTTGATGAA
TTTAAAAACGAGACTCCTCATTTTCTTGACATTGACATGCCCACTGACGA
ATTTCAAGTGTATAGAAAACCAACAAATACAGGACTTTATGTCAACTTTG
ATAGTTTCGTGCCGTGGCAACATCGCATTTCTTGGTTTCGTAGTTTAATT
GTTCGTGCTACTCGAATTTGTTCACCTAATAGGCTACCTgctgaaatcaa
gaaaattaaagaaatggCATCTTGGAATGGTTTTCCTAAATACCTCGTCA
ACTCGTTAACTAAACGTTTTATTGAGAAATTATCGACCCCTCGTTC Coding sequence (CDS) from alignment at scaffold_33:33655..34750 >TCONS_00059660 ID=TCONS_00059660|Name=TCONS_00059660|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_33:33655..34750 (Clytia hemisphaerica)
ATGCGTCCACAAAATTCTAAACCGGCTCGTGCACATGGTCTTCCTAAAAT
TCATAAGCGTTATGAAAACATTCCGAAATTCCGTCCTATTGTCGACACGA
CAGGCACTTCCCACTACAAAGTTGGTGAATATTTAACCAATCTTCTCCAT
CCACTTACTGTAAACGAATTCACTTTCAAAGATTCCTACGATGCTGTTTC
GAAAATTCAGAACATACCTCctgaactttttcaaaatggctacCAATTTG
TTTCATTTGACGTTGAGTCTTTATTTACTAATGTACCTCTCAAACGAACA
CTAAATATCATTTGTCGacgagttttcaaagagaagCGTATTGGTACTAC
CCTACAAGAAAGAActctcaaaaaattgatccGGGACACCTGCACCAAAA
CAGCTTTTAGTTGTAATAATGTCCTTTATGAACAATGTGACGGAGTTAGT
ATGGGTTCATCCCTTGGTCCAGTACTAGCTAATTTGATCATGACAGAACT
CGAAGAAAAAGTCGTTCGTCCTCTTATAACCAAAGGGACATTGAAATTTT
ATGGTCGTTATGTGGATGACACGCTTTTGGCAATCAAACCGAAAGATGTC
AAAAAGGTTCATAAAGCCTTtgagaaatttgataaaaatcttaAGTTCAC
TGTTGATGAATTTAAAAACGAGACTCCTCATTTTCTTGACATTGACATGC
CCACTGACGAATTTCAAGTGTATAGAAAACCAACAAATACAGGACTTTAT
GTCAACTTTGATAGTTTCGTGCCGTGGCAACATCGCATTTCTTGGTTTCG
TAGTTTAATTGTTCGTGCTACTCGAATTTGTTCACCTAATAGGCTACCTg
ctgaaatcaagaaaattaaagaaatggCATCTTGGAATGGTTTTCCTAAA
TACCTCGTCAACTCGTTAACTAAACGTTTTATTGAGAAATTATCGACCCC
TCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059660-exon-scaffold_33-1491911889:33655..34750 | TCONS_00059660-exon-scaffold_33-1491911889:33655..34750 | Clytia hemisphaerica | exon |
| TCONS_00059660-exon-scaffold_33-1510915933:33655..34750 | TCONS_00059660-exon-scaffold_33-1510915933:33655..34750 | Clytia hemisphaerica | exon |
| TCONS_00059660-exon-scaffold_33-1575043694:33655..34750 | TCONS_00059660-exon-scaffold_33-1575043694:33655..34750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_33 | supercontig | scaffold_33:33655..34750 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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