|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059653 ID=TCONS_00059653|Name=TCONS_00059653|organism=Clytia hemisphaerica|type=transcript|length=1122bp
ctttagaaaaaggTTCCTTGagtctaaaatgcttattttatcccaaatat
tcaataaattacggtttaaacgatatatttgacataaaaataaatttgta
ctGGAAacttgtcaatttttgtgacaccttactgtcagaaatgtcgtTAT
gttcaaggtgtgaaaatttttaggtgtcaaatttatGTTATTTCGAAGCT
AAATAAAGATACTGCACCTGATCTTTAAATGATTTAAATGGTTTTGTAAT
CATTTGGTCCATGTGATTTtagagaaatatcaaaattcgaATATTCACCC
GTAGAACACCAGAAAATGTCTTCAATTTTCATCTCAAGCATGATTTTACG
AAATTCTGGAACGTTTTCCTTTGTCAAATCCAAAGCATCCAAGTCCAAAA
ACATGACAACTggtaaagttttgaaaaattcaaaatccgcAAGGGAAAGT
TTATAATCTGAATGATTATTTTCCACCAAGTCTAAATCAGTCAGGGTTTT
GATTCCAGATAATAATTTAACAATCTCAGCAATCTTACCAGCTTCCCAAC
GAATCTGTGCTGTAGAAAGCGTAATTATcggtaaatcactaaataacTGA
AGAGGAATCGGATCTTTGCACTTAGCATGATGAATGTTAAAATCTtccaa
atattgaaattttgaaagtacgGGAACAAACTTTGTAAGGCCATCACTCG
ACAAACCATATTCAAGAGCGTCACAATCAATCTTGAAAACTTTTATGTTA
TTCGATGCAAGTTTATCCAAATCTTCAACAGTTAAAAGATATTGGTTATT
GAACGTTTCAGAAATATTGACACGTGTTCCTTTAAGTTTacacaaaattt
taacaagCTCATCAAAATCGGTGATCGATAAACAACTCAACAAAATTTCC
tcaatgaaaactttttcactGACCATTTCAAGTTGTTTAGGTGACCAAGC
ACAGTTTCTTCTTTCATCGCTACTAAACTTGTGATTGATTATCAACTTTC
GTATCGAACAAGCACCACCGAGAATTTCgttcaaaaacaaatcaaagtcG
TCTCTGTATTTCATATTAAGGGCATTTGTGTGCAGAACAATTGGTGGTTT
TGCAATTTCACAAATATCGTCT Run BLAST on NCBI protein sequence of TCONS_00059653-protein >TCONS_00059653-protein ID=TCONS_00059653-protein|Name=TCONS_00059653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
DDICEIAKPPIVLHTNALNMKYRDDFDLFLNEILGGACSIRKLIINHKFS
SDERRNCAWSPKQLEMVSEKVFIEEILLSCLSITDFDELVKILCKLKGTR
VNISETFNNQYLLTVEDLDKLASNNIKVFKIDCDALEYGLSSDGLTKFVP
VLSKFQYLEDFNIHHAKCKDPIPLQLFSDLPIITLSTAQIRWEAGKIAEI
VKLLSGIKTLTDLDLVENNHSDYKLSLADFEFFKTLPVVMFLDLDALDLT
KENVPEFRKIMLEMKIEDIFWCSTGEYSNFDISLKSHGPNDYKTI Run BLAST on NCBI transcript from alignment at scaffold_329:834056..835177 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059653 ID=TCONS_00059653|Name=TCONS_00059653|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at scaffold_329:834056..835177 (Clytia hemisphaerica)
AGACGATATTTGTGAAATTGCAAAACCACCAATTGTTCTGCACACAAATG
CCCTTAATATGAAATACAGAGACgactttgatttgtttttgaacGAAATT
CTCGGTGGTGCTTGTTCGATACGAAAGTTGATAATCAATCACAAGTTTAG
TAGCGATGAAAGAAGAAACTGTGCTTGGTCACCTAAACAACTTGAAATGG
TCagtgaaaaagttttcattgaGGAAATTTTGTTGAGTTGTTTATCGATC
ACCGATTTTGATGAGcttgttaaaattttgtgtAAACTTAAAGGAACACG
TGTCAATATTTCTGAAACGTTCAATAACCAATATCTTTTAACTGTTGAAG
ATTTGGATAAACTTGCATCGAATAACATAAAAGTTTTCAAGATTGATTGT
GACGCTCTTGAATATGGTTTGTCGAGTGATGGCCTTACAAAGTTTGTTCC
cgtactttcaaaatttcaatatttggaAGATTTTAACATTCATCATGCTA
AGTGCAAAGATCCGATTCCTCTTCAgttatttagtgatttaccgATAATT
ACGCTTTCTACAGCACAGATTCGTTGGGAAGCTGGTAAGATTGCTGAGAT
TGTTAAATTATTATCTGGAATCAAAACCCTGACTGATTTAGACTTGGTGG
AAAATAATCATTCAGATTATAAACTTTCCCTTgcggattttgaatttttc
aaaactttaccAGTTGTCATGTTTTTGGACTTGGATGCTTTGGATTTGAC
AAAGGAAAACGTTCCAGAATTTCGTAAAATCATGCTTGAGATGAAAATTG
AAGACATTTTCTGGTGTTCTACGGGTGAATATtcgaattttgatatttct
ctaAAATCACATGGACCAAATGATTACAAAACCATTTAAATCATTTAAAG
ATCAGGTGCAGTATCTTTATTTAGCTTCGAAATAACataaatttgacacc
taaaaattttcacaccttgaacATAacgacatttctgacagtaaggtgtc
acaaaaattgacaagtTTCCagtacaaatttatttttatgtcaaatatat
cgtttaaaccgtaatttattgaatatttgggataaaataagcattttaga
ctCAAGGAAcctttttctaaag Coding sequence (CDS) from alignment at scaffold_329:834056..835177 >TCONS_00059653 ID=TCONS_00059653|Name=TCONS_00059653|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_329:834056..835177 (Clytia hemisphaerica)
GACGATATTTGTGAAATTGCAAAACCACCAATTGTTCTGCACACAAATGC
CCTTAATATGAAATACAGAGACgactttgatttgtttttgaacGAAATTC
TCGGTGGTGCTTGTTCGATACGAAAGTTGATAATCAATCACAAGTTTAGT
AGCGATGAAAGAAGAAACTGTGCTTGGTCACCTAAACAACTTGAAATGGT
CagtgaaaaagttttcattgaGGAAATTTTGTTGAGTTGTTTATCGATCA
CCGATTTTGATGAGcttgttaaaattttgtgtAAACTTAAAGGAACACGT
GTCAATATTTCTGAAACGTTCAATAACCAATATCTTTTAACTGTTGAAGA
TTTGGATAAACTTGCATCGAATAACATAAAAGTTTTCAAGATTGATTGTG
ACGCTCTTGAATATGGTTTGTCGAGTGATGGCCTTACAAAGTTTGTTCCc
gtactttcaaaatttcaatatttggaAGATTTTAACATTCATCATGCTAA
GTGCAAAGATCCGATTCCTCTTCAgttatttagtgatttaccgATAATTA
CGCTTTCTACAGCACAGATTCGTTGGGAAGCTGGTAAGATTGCTGAGATT
GTTAAATTATTATCTGGAATCAAAACCCTGACTGATTTAGACTTGGTGGA
AAATAATCATTCAGATTATAAACTTTCCCTTgcggattttgaatttttca
aaactttaccAGTTGTCATGTTTTTGGACTTGGATGCTTTGGATTTGACA
AAGGAAAACGTTCCAGAATTTCGTAAAATCATGCTTGAGATGAAAATTGA
AGACATTTTCTGGTGTTCTACGGGTGAATATtcgaattttgatatttctc
taAAATCACATGGACCAAATGATTACAAAACCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059653-exon-scaffold_329-1491911889:834056..835177 | TCONS_00059653-exon-scaffold_329-1491911889:834056..835177 | Clytia hemisphaerica | exon |
| TCONS_00059653-exon-scaffold_329-1510915933:834056..835177 | TCONS_00059653-exon-scaffold_329-1510915933:834056..835177 | Clytia hemisphaerica | exon |
| TCONS_00059653-exon-scaffold_329-1575043694:834056..835177 | TCONS_00059653-exon-scaffold_329-1575043694:834056..835177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:834056..835177 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032675 | L_dom-like |
Blast
The following BLAST results are available for this feature:
|
