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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059652 ID=TCONS_00059652|Name=TCONS_00059652|organism=Clytia hemisphaerica|type=transcript|length=1085bp
ccaaggaacaagtgtgcagaATTTCGGCCAaatggaacaatttttgaagt
ctccaggctgccccaaagttttagcctcgttgtGGCGAAAAACtcatccc
caggccccaaaaatcaaactttgaaaaatgaaaaaagcacccccagatat
tcacccaaggaacaagtgtgccaaatctCAGCCAAGTCCGACCATTTTTA
AAGTCttcaggctgccctaaagttttgggACATCATACACAcgcacagac
acacagacacacattctcacattctagctcaactgaagttgagaatatta
aTTCCGCTGTGAATTTGAAGATGATTTCTAAGATAGCTTCTAGTCGCAAA
AGGTTTTTCACAAACTACACACTTGTATGACTTAACTCCGGTGTGAATTC
TAAGGTGTTGATTAAGAGATAAAAGATTTACCACAAACATTACGCTTAAG
TGGCATAGTTCTTTCGTGCATTTTGAGATGAACTTCCAGATTGCATTTCC
GTTCAAATGGTTGACTACAGACGTAACTTCTACATTAATATCACTTTCTG
GGTGTGATTTCAAATTCCTCGAATCATTTTCTTCATTGTCATTCgctaaa
aaatcaacttttattttcataaaataattattttcatgttGACTTAAAAT
TGATTGCTGTTTAAGTAGTTCTTTACCGATTGTTCTCGAGCTAAATCATT
TTTTACTTGAATTCCAATTGTCTTTAGGAGAAGTTTGACCCACTCGCTGT
CTGGTGGAATATCTCCATTCCAATATTCGTTTGATAAGTCTTCAGCAACT
TTAACACCGATCCCTTAGGAAGGATTTTCGAGTTTAGGACTTTCTGGTTC
AATTTTGACAATGCCATAACAAAAACCGCTGTCTACCAAAACATCCCCAA
CAAAAGCTTTATTAATATTTGCCATATCAACCATTCGAACAACCATTCAT
ACAAGTGAActtccaactttttttattccatacacaatacacctttttac
gGTTAGGTGCCTCATATAAAagttcaccaaaatttcgagtaaacaaacca
tctcattggctaaaagcaaaaacataaacaaaaaa Run BLAST on NCBI protein sequence of TCONS_00059652-protein >TCONS_00059652-protein ID=TCONS_00059652-protein|Name=TCONS_00059652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MKIKVDFLANDNEENDSRNLKSHPESDINVEVTSVVNHLNGNAIWKFISK
CTKELCHLSVMFVVNLLSLNQHLRIHTGVKSYKCVVCEKPFATRSYLRNH
LQIHSGINILNFS Run BLAST on NCBI transcript from alignment at scaffold_329:809120..810204 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059652 ID=TCONS_00059652|Name=TCONS_00059652|organism=Clytia hemisphaerica|type=transcript|length=1085bp|location=Sequence derived from alignment at scaffold_329:809120..810204 (Clytia hemisphaerica)
ttttttgtttatgtttttgcttttagccaatgagatggtttgtttactcg
aaattttggtgaactTTTATATGAGGCACCTAACcgtaaaaaggtgtatt
gtgtatggaataaaaaaagttggaagTTCACTTGTATGAATGGTTGTTCG
AATGGTTGATATGGCAAATATTAATAAAGCTTTTGTTGGGGATGTTTTGG
TAGACAGCGGTTTTTGTTATGGCATTGTCAAAATTGAACCAGAAAGTCCT
AAACTCGAAAATCCTTCCTAAGGGATCGGTGTTAAAGTTGCTGAAGACTT
ATCAAACGAATATTGGAATGGAGATATTCCACCAGACAGCGAGTGGGTCA
AACTTCTCCTAAAGACAATTGGAATTCAAGTAAAAAATGATTTAGCTCGA
GAACAATCGGTAAAGAACTACTTAAACAGCAATCAATTTTAAGTCaacat
gaaaataattattttatgaaaataaaagttgattttttagcGAATGACAA
TGAAGAAAATGATTCGAGGAATTTGAAATCACACCCAGAAAGTGATATTA
ATGTAGAAGTTACGTCTGTAGTCAACCATTTGAACGGAAATGCAATCTGG
AAGTTCATCTCAAAATGCACGAAAGAACTATGCCACTTAAGCGTAATGTT
TGTGGTAAATCTTTTATCTCTTAATCAACACCTTAGAATTCACACCGGAG
TTAAGTCATACAAGTGTGTAGTTTGTGAAAAACCTTTTGCGACTAGAAGC
TATCTTAGAAATCATCTTCAAATTCACAGCGGAAttaatattctcaactt
cagttgagctagaatgtgagaatgtgtgtctgtgtgtctgtgcgTGTGTA
TGATGTcccaaaactttagggcagcctgaaGACTTTAAAAATGGTCGGAC
TTGGCTGagatttggcacacttgttccttgggtgaatatctgggggtgct
tttttcatttttcaaagtttgatttttggggcctggggatgaGTTTTTCG
CCacaacgaggctaaaactttggggcagcctggagacttcaaaaattgtt
ccattTGGCCGAAATtctgcacacttgttccttgg Coding sequence (CDS) from alignment at scaffold_329:809120..810204 >TCONS_00059652 ID=TCONS_00059652|Name=TCONS_00059652|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_329:809120..810204 (Clytia hemisphaerica)
atgaaaataaaagttgattttttagcGAATGACAATGAAGAAAATGATTC
GAGGAATTTGAAATCACACCCAGAAAGTGATATTAATGTAGAAGTTACGT
CTGTAGTCAACCATTTGAACGGAAATGCAATCTGGAAGTTCATCTCAAAA
TGCACGAAAGAACTATGCCACTTAAGCGTAATGTTTGTGGTAAATCTTTT
ATCTCTTAATCAACACCTTAGAATTCACACCGGAGTTAAGTCATACAAGT
GTGTAGTTTGTGAAAAACCTTTTGCGACTAGAAGCTATCTTAGAAATCAT
CTTCAAATTCACAGCGGAAttaatattctcaacttcagttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059652-exon-scaffold_329-1491911889:809120..810204 | TCONS_00059652-exon-scaffold_329-1491911889:809120..810204 | Clytia hemisphaerica | exon |
| TCONS_00059652-exon-scaffold_329-1510915933:809120..810204 | TCONS_00059652-exon-scaffold_329-1510915933:809120..810204 | Clytia hemisphaerica | exon |
| TCONS_00059652-exon-scaffold_329-1575043694:809120..810204 | TCONS_00059652-exon-scaffold_329-1575043694:809120..810204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:809120..810204 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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