TCONS_00059648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059648
Unique NameTCONS_00059648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059648 ID=TCONS_00059648|Name=TCONS_00059648|organism=Clytia hemisphaerica|type=transcript|length=800bp
CAACatgtttcaaaaactgtatTAAATCGCCTAACACTTGCACTtgaatt
cttttctttcttctctGAGAAGACTCTTAAAGTTTTAAAATCCTCTACCA
GTACCACCAACCATAAACTCTCTTCAACAAGAAAATacattattttaaca
ttttaactTTCCTATCTCCTCCTACTTATATGAGCAGCTGCCATGATGTT
CAATAACACTTCTCACAAATGTAGACACAGTTCGTTACGAAATTTATACT
AACAACCTCTTCACCTTGGTGTGAAAACAAGGGAAATGACGATTTCTTCA
TTGGAGCATGCGTTGTTTTTCAATAGTTTCAACCACACGCTGGTAAACAG
GGTTACGTGATAGACTACATTGAGTAAcacaatgtttttaaaagacaTCT
TATTCAGCAAGGACACCGCATTGCCTACCAGGCGTGAAAGCATAACTTCC
CCGGCGCcagaatcttttaaaaaatttaaacattttctcTATGTACAAAG
GGGAGGGAACGATTATTTATCAAATTCTTCACACCTAACTGTCGCCTATC
AAAGATATACATATTTATTTTACTTCACACCTTGGAGTGAATAGCTGCAA
TAAGGAAACGTAATTTTCTATACAGTAAGGGAGAGTATTATTTCCATTTC
TCTCAGActaactctcctttgtagatgCTAAGATTATATTTagacttttt
ataagaagaagaCGAAGATGAGGTCTGTTTAAGATATATTTTTTATagtt
ttaagtttaaaaatccaatattatttaattgttttttatgCGTGTCAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_329:717681..718480

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059648 ID=TCONS_00059648|Name=TCONS_00059648|organism=Clytia hemisphaerica|type=transcript|length=800bp|location=Sequence derived from alignment at scaffold_329:717681..718480 (Clytia hemisphaerica)
TTCTGACACGcataaaaaacaattaaataatattggatttttaaacttaa
aactATAAAAAATATATCTTAAACAGACCTCATCTTCGtcttcttcttat
aaaaagtctAAATATAATCTTAGcatctacaaaggagagttagTCTGAGA
GAAATGGAAATAATACTCTCCCTTACTGTATAGAAAATTACGTTTCCTTA
TTGCAGCTATTCACTCCAAGGTGTGAAGTAAAATAAATATGTATATCTTT
GATAGGCGACAGTTAGGTGTGAAGAATTTGATAAATAATCGTTCCCTCCC
CTTTGTACATAgagaaaatgtttaaattttttaaaagattctgGCGCCGG
GGAAGTTATGCTTTCACGCCTGGTAGGCAATGCGGTGTCCTTGCTGAATA
AGAtgtcttttaaaaacattgtgTTACTCAATGTAGTCTATCACGTAACC
CTGTTTACCAGCGTGTGGTTGAAACTATTGAAAAACAACGCATGCTCCAA
TGAAGAAATCGTCATTTCCCTTGTTTTCACACCAAGGTGAAGAGGTTGTT
AGTATAAATTTCGTAACGAACTGTGTCTACATTTGTGAGAAGTGTTATTG
AACATCATGGCAGCTGCTCATATAAGTAGGAGGAGATAGGAAagttaaaa
tgttaaaataatgtATTTTCTTGTTGAAGAGAGTTTATGGTTGGTGGTAC
TGGTAGAGGATTTTAAAACTTTAAGAGTCTTCTCagagaagaaagaaaag
aattcaAGTGCAAGTGTTAGGCGATTTAatacagtttttgaaacatGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037528XLOC_037528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059648-exon-scaffold_329-1491911889:717681..718480TCONS_00059648-exon-scaffold_329-1491911889:717681..718480Clytia hemisphaericaexon
TCONS_00059648-exon-scaffold_329-1510915933:717681..718480TCONS_00059648-exon-scaffold_329-1510915933:717681..718480Clytia hemisphaericaexon
TCONS_00059648-exon-scaffold_329-1575043694:717681..718480TCONS_00059648-exon-scaffold_329-1575043694:717681..718480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:717681..718480 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86093	0.93662	0.883598	0.93096	0.242862	0.127942	0.231534	0.144506	0.556448	0.313296	0.0608185	0.359817	0.159696	0	0.034087	0.0731612	0.405579	0.230947	0.19144	0	0.348243	0.424651	0.206488	0.0625758	0.128903	0.460172	0.164626	0	0.0666286	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top