TCONS_00059636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059636
Unique NameTCONS_00059636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059636 ID=TCONS_00059636|Name=TCONS_00059636|organism=Clytia hemisphaerica|type=transcript|length=442bp
ATCCGGAATTCACTGAAAACAAGGAACTTGAGTTCGGCTCTCGTTATAAA
ATCAGTGACGTAGGAGAAACTCCGTAAACTAAACCTTCCCGATATTTAGA
ACTTTAGCGTATCAGAAGTAAGAAAATTTTCATATCAAGATTATGCAAAT
CGCCTTAGGAAAGAAATTCAGTTTTGGTACACTCCAAACCACCTTGGAAC
TCCGTTGGAcagtaggcttctgctcatcctctagcgaaaaatgtttctta
tatgaatctatagaggtctgcgattcagactagttgGACAGACACTatag
tagagtctctttaactcgaactatAACTGGAATGCCTCTAAGTGGAACAA
GTTTTAACGTTCCTATAGTTAACAATACTGTATTAAACCTTACTCGAAAA
CTTGGAAATCTCCTTAACTTGAATAAATTTGTGTTTTCCTCG
Run BLAST on NCBI

transcript from alignment at scaffold_329:606909..607350

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059636 ID=TCONS_00059636|Name=TCONS_00059636|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at scaffold_329:606909..607350 (Clytia hemisphaerica)
CGAGGAAAACACAAATTTATTCAAGTTAAGGAGATTTCCAAGTTTTCGAG
TAAGGTTTAATACAGTATTGTTAACTATAGGAACGTTAAAACTTGTTCCA
CTTAGAGGCATTCCAGTTatagttcgagttaaagagactctactatAGTG
TCTGTCcaactagtctgaatcgcagacctctatagattcatataagaaac
atttttcgctagaggatgagcagaagcctactgTCCAACGGAGTTCCAAG
GTGGTTTGGAGTGTACCAAAACTGAATTTCTTTCCTAAGGCGATTTGCAT
AATCTTGATATGAAAATTTTCTTACTTCTGATACGCTAAAGTTCTAAATA
TCGGGAAGGTTTAGTTTACGGAGTTTCTCCTACGTCACTGATTTTATAAC
GAGAGCCGAACTCAAGTTCCTTGTTTTCAGTGAATTCCGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037516XLOC_037516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059636-exon-scaffold_329-1491911889:606909..607350TCONS_00059636-exon-scaffold_329-1491911889:606909..607350Clytia hemisphaericaexon
TCONS_00059636-exon-scaffold_329-1510915933:606909..607350TCONS_00059636-exon-scaffold_329-1510915933:606909..607350Clytia hemisphaericaexon
TCONS_00059636-exon-scaffold_329-1575043694:606909..607350TCONS_00059636-exon-scaffold_329-1575043694:606909..607350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:606909..607350 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.168669	0.821351	0.162261	0	0.183269	0	0.476801	0.154265	0.202815	1.41773	1.05166	2.07507	0.278358	0	0.117159	0.647444	0	0	0	0	0	0.817401	0.437706	0.208786	0	0.169002	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top