|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059620 ID=TCONS_00059620|Name=TCONS_00059620|organism=Clytia hemisphaerica|type=transcript|length=1824bp
aggttatctatatttaaagaaatttaataaagagttgacacaatatctat
gtttcaaactcagagtttcatggtgctcaggcaccaatcatcagtgaaat
aaaataaaaattaaagaaataaaaacttctgtccaactatattcactcgg
AAGATTTGGGTGGCAGGTTTATGCATACCGTCCTTATCAGCATGGCATAC
TGTATCCTGATCTTTAAATGATTTAAATGGTTTTGTAATCATCTGGTCCA
TGTGATTTtagagaaatatcaaaattcgaATATTCACCCGTAGAAGACCA
GTAAATATNCCCTTATAAGTATGGCATACTGTATCCTGATCTTTAAATGA
TTTAAATGGTTTTGTAATCATCTGGTCCATGTGATTTtagagaaatatca
aaattcgaATATTCACCCGTAGAAGACCAGTAAATATCTTCNNNNNNNNN
NNNNNNNNNNNNNNTCCTGATCTTTAAATGATTTAAATGGTTTTGTAATC
ATCTGGTCCATGTGATTTtagagaaatatcaaaattcgaATATTCACCCG
TAGAAGACCAGTATatatcttcaattttcatctcAAGCATGATTTTACGA
AATTCTGGAACGTTTTCCTTTGTCAAATCTAAAGCATCCAAGTCCAAACA
CATGACTAttggtaaaattttgaaacGTTCAAAATCCGCAAGGGAAAGTT
TATAATCTGAATGATTATTTACCTCCAAGTCTAAATCAGTCAGGGTTTTG
ATTTCagataatattttaacaatCTCAGCAATTTTACCAGCTTCCCAACA
AATCTGTGCTGTAGAAAGCGTATAATTATCGGTAAATCGGTAAATAACTG
AATAGGTATTGGATCTTTGCAGTAAGCATGACGAATGTTAAAATCTTCCa
aagattgaaattttgaaattacagGAGCANNNNNNNNNNNNNNNNNNCAA
GGGCAACAcaatcaattttgaaaacttttatgtTATTCGTTGCAAGTTTA
TCCAAATCTTCAACAGTTAAAAGATATTGGTTATTGAAGCTTGTTTTGGA
AATGTTGACACGTGTTCCTTTAAGTTTACACAAAACTTTAAGAAGCTCAT
CAAAATCAGTGATCGATAAACAACTCAACAAAAGTTCCtcaatgaaaact
ttttcattgaCCATTTCAAGTTGTTTAGGTGACCAAGCACAGTTTCTTCT
TTCATCACTACTAAACTTGTGATTGATTATCAACTTTCGTATCGAACAAG
CACCGCCgagaatttctttcaaaaacaaatcaaagtcGTCTCTGTATTTC
ATATTAAGGGCATTTGTGTGCAGAACAATTGATGGTTTTGCAATTTCACA
AATATCGTCTAATCTGTCTTTAAAGGTTGCATTATTGTTGTTATTATCAA
TATGTATTAACTCAAGCCCAGAAACGATATCACAAATATTAGACCAAAGA
CAATTAAACTCATTTGTATGCAATTCTTTAATAGGAAATTTCGTTATTTT
TGACAAGAAGGAATGATTTCGTTTCCCATAAAATCTTGGTTTTGACCAAA
TTCGTTCTATAGTAAGAATATACATTCTTTTTGATGTTCGTGATAAAGCT
TNAATTCGTTCAATAGTAAGATTATACATTCTTTTTGATGTTCGTGATAA
AGCTTTTGCATCTTCCTTTTCCGAGAACGCAATGATTATTTCTAGTATCT
CATCTGGTAATAAATTGATATCCATTTGAGCTTGATTCTTTGAACACTTT
TGtttacgtgttttttttttgttgttgtttatcTAGTGAAGAAAAGACAG
TAAGGTTTAGAATGTTTAAGATCC Run BLAST on NCBI transcript from alignment at scaffold_329:822635..824458- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059620 ID=TCONS_00059620|Name=TCONS_00059620|organism=Clytia hemisphaerica|type=transcript|length=1824bp|location=Sequence derived from alignment at scaffold_329:822635..824458- (Clytia hemisphaerica)
AGGTTATCTATATTTAAAGAAATTTAATAAAGAGTTGACACAATATCTAT
GTTTCAAACTCAGAGTTTCATGGTGCTCAGGCACCAATCATCAGTGAAAT
AAAATAAAAATTAAAGAAATAAAAACTTCTGTCCAACTATATTCACTCGG
AAGATTTGGGTGGCAGGTTTATGCATACCGTCCTTATCAGCATGGCATAC
TGTATCCTGATCTTTAAATGATTTAAATGGTTTTGTAATCATCTGGTCCA
TGTGATTTTAGAGAAATATCAAAATTCGAATATTCACCCGTAGAAGACCA
GTAAATATNCCCTTATAAGTATGGCATACTGTATCCTGATCTTTAAATGA
TTTAAATGGTTTTGTAATCATCTGGTCCATGTGATTTTAGAGAAATATCA
AAATTCGAATATTCACCCGTAGAAGACCAGTAAATATCTTCNNNNNNNNN
NNNNNNNNNNNNNNTCCTGATCTTTAAATGATTTAAATGGTTTTGTAATC
ATCTGGTCCATGTGATTTTAGAGAAATATCAAAATTCGAATATTCACCCG
TAGAAGACCAGTATATATCTTCAATTTTCATCTCAAGCATGATTTTACGA
AATTCTGGAACGTTTTCCTTTGTCAAATCTAAAGCATCCAAGTCCAAACA
CATGACTATTGGTAAAATTTTGAAACGTTCAAAATCCGCAAGGGAAAGTT
TATAATCTGAATGATTATTTACCTCCAAGTCTAAATCAGTCAGGGTTTTG
ATTTCAGATAATATTTTAACAATCTCAGCAATTTTACCAGCTTCCCAACA
AATCTGTGCTGTAGAAAGCGTATAATTATCGGTAAATCGGTAAATAACTG
AATAGGTATTGGATCTTTGCAGTAAGCATGACGAATGTTAAAATCTTCCA
AAGATTGAAATTTTGAAATTACAGGAGCANNNNNNNNNNNNNNNNNNCAA
GGGCAACACAATCAATTTTGAAAACTTTTATGTTATTCGTTGCAAGTTTA
TCCAAATCTTCAACAGTTAAAAGATATTGGTTATTGAAGCTTGTTTTGGA
AATGTTGACACGTGTTCCTTTAAGTTTACACAAAACTTTAAGAAGCTCAT
CAAAATCAGTGATCGATAAACAACTCAACAAAAGTTCCTCAATGAAAACT
TTTTCATTGACCATTTCAAGTTGTTTAGGTGACCAAGCACAGTTTCTTCT
TTCATCACTACTAAACTTGTGATTGATTATCAACTTTCGTATCGAACAAG
CACCGCCGAGAATTTCTTTCAAAAACAAATCAAAGTCGTCTCTGTATTTC
ATATTAAGGGCATTTGTGTGCAGAACAATTGATGGTTTTGCAATTTCACA
AATATCGTCTAATCTGTCTTTAAAGGTTGCATTATTGTTGTTATTATCAA
TATGTATTAACTCAAGCCCAGAAACGATATCACAAATATTAGACCAAAGA
CAATTAAACTCATTTGTATGCAATTCTTTAATAGGAAATTTCGTTATTTT
TGACAAGAAGGAATGATTTCGTTTCCCATAAAATCTTGGTTTTGACCAAA
TTCGTTCTATAGTAAGAATATACATTCTTTTTGATGTTCGTGATAAAGCT
TNAATTCGTTCAATAGTAAGATTATACATTCTTTTTGATGTTCGTGATAA
AGCTTTTGCATCTTCCTTTTCCGAGAACGCAATGATTATTTCTAGTATCT
CATCTGGTAATAAATTGATATCCATTTGAGCTTGATTCTTTGAACACTTT
TGTTTACGTGTTTTTTTTTTGTTGTTGTTTATCTAGTGAAGAAAAGACAG
TAAGGTTTAGAATGTTTAAGATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059620-exon-scaffold_329-1575043694:822635..824458 | TCONS_00059620-exon-scaffold_329-1575043694:822635..824458 | Clytia hemisphaerica | exon |
| TCONS_00059620-exon-scaffold_329-1510915933:822635..824458 | TCONS_00059620-exon-scaffold_329-1510915933:822635..824458 | Clytia hemisphaerica | exon |
| TCONS_00059620-exon-scaffold_329-1491911889:822635..824458 | TCONS_00059620-exon-scaffold_329-1491911889:822635..824458 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:822635..824458 - |
Blast
The following BLAST results are available for this feature:
|
