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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059558 ID=TCONS_00059558|Name=TCONS_00059558|organism=Clytia hemisphaerica|type=transcript|length=3196bpRun BLAST on NCBI protein sequence of TCONS_00059558-protein >TCONS_00059558-protein ID=TCONS_00059558-protein|Name=TCONS_00059558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=689bp MSEDQQNEQNEQNEQNENGSNFPGQNQGPPPMEQRFPGPPPQRPMMPPPMRun BLAST on NCBI transcript from alignment at scaffold_329:764381..791777+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059558 ID=TCONS_00059558|Name=TCONS_00059558|organism=Clytia hemisphaerica|type=transcript|length=27397bp|location=Sequence derived from alignment at scaffold_329:764381..791777+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_329:764381..791777+ >TCONS_00059558 ID=TCONS_00059558|Name=TCONS_00059558|organism=Clytia hemisphaerica|type=CDS|length=24840bp|location=Sequence derived from alignment at scaffold_329:764381..791777+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059558 vs. Swiss-Prot (Human)
Match: TCRG1 (Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2) HSP 1 Score: 210.305 bits (534), Expect = 1.779e-55 Identity = 123/321 (38.32%), Postives = 196/321 (61.06%), Query Frame = 3
Query: 2145 DETSEWRKVKGSLETDKRYELVGSSSKREQFFNDYIKELVEKKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAKEAPQNEEADEDRKLDEKYERMEASLRKREEEVRAQKELYEKDREKERGIHMHDKAVQHFNALLADMVKDTQYTWKETRRTLRKDPRWSALDVLDKETKESLFEEHIKDIGDKRKRSFRRLLEEAD-VPLDAYWRDVRRQIKDDPRYAKFGNSE-KREEQFEVYIREKTTMARNDFRELLRETKTITYKSKKLVDESNSYWKDIKEVLKKDKRYHVMSSLANERDRLIMSYISELHKRG 3101
D S W KVK +E+D RY+ V SSS RE F YI+++ +N +++++++L E+ R+EASLR+RE EV+ + K+ ++ER H ++A+Q+F ALL+DMV+ + +W +TRRTLRKD RW + +L++E KE LF EHI+ + K++ FR+LL+E + L + W++V++ IK+DPR KF +S+ K++ +FE YIR+K A+ DFR LL+ETK ITY+SKKL+ ES+ + KD++++L+ DKRY V+ + ER +LI++Y+ +L +RG
Sbjct: 809 DSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIA----------------------------------------------KNLDSEKEKEL-ERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRRG 1082 HSP 2 Score: 125.176 bits (313), Expect = 6.647e-29 Identity = 82/150 (54.67%), Postives = 114/150 (76.00%), Query Frame = 1
Query: 1582 EADVK----RSIIPLEERMTMFTQLLREKQVSAFSTWEKELHKILFDPRYLLLTMKERKNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVVNSSRLSFSDFASKNSKDSRYKGIEKMRERENLFNEFMTDFRKHEKERLRAREQK 2019
EA++K R+I+PLE RM F +L E+ VSAFSTWEKELHKI+FDPRYLLL KERK +++YV+ RA EER+E+ K+ + KE+FK++++E + R +FS+FA+K++KDSR+K IEKM++RE LFNEF+ RK EKE + R +K
Sbjct: 645 EAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEK 794 The following BLAST results are available for this feature:
BLAST of TCONS_00059558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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