|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059500 ID=TCONS_00059500|Name=TCONS_00059500|organism=Clytia hemisphaerica|type=transcript|length=3774bpRun BLAST on NCBI protein sequence of TCONS_00059500-protein >TCONS_00059500-protein ID=TCONS_00059500-protein|Name=TCONS_00059500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=962bp MPLRLDVKRTLSARSDRAKAVDLHPTEPWMLVCLYNGNCHVWDHQRQTLIRun BLAST on NCBI transcript from alignment at scaffold_329:114220..138613+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059500 ID=TCONS_00059500|Name=TCONS_00059500|organism=Clytia hemisphaerica|type=transcript|length=24394bp|location=Sequence derived from alignment at scaffold_329:114220..138613+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_329:114220..138613+ >TCONS_00059500 ID=TCONS_00059500|Name=TCONS_00059500|organism=Clytia hemisphaerica|type=CDS|length=63558bp|location=Sequence derived from alignment at scaffold_329:114220..138613+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059500 vs. Swiss-Prot (Human)
Match: COPB2 (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2) HSP 1 Score: 1312.75 bits (3396), Expect = 0.000e+0 Identity = 623/839 (74.26%), Postives = 737/839 (87.84%), Query Frame = 1
Query: 346 MPLRLDVKRTLSARSDRAKAVDLHPTEPWMLVCLYNGNCHVWDHQRQTLIKSFEVTDLPVRTGCFVARKNWVVTGSDDMMIRIFNYNTLEKVHGFEAHSDYLRCLQVHPTQPYLVSSSDDMSIKLWDWDKKWQCVQTFEGHTHYVMQICINPKDNNQFASASLDRTIKVWQLGSQHPNFTLEGHDKGVNCVDYFHGGEKPYLVSGADDRLVKIWDYQNKTCVKTLDGHAQNVSSVLFHPELPIILSGSEDGTVRIWHANTHRLESTLNYGMERVWCMSALKGSNNIGIGYDEGSIMVKFGREEPAMSMDSSGKIIFAKHSEILQANLKNLGDTEYKDGERLPVAVKEMGSCEIYPQTLSHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAADSSEYAVRDG-SXXXXXXXXXXXXXXXPDYGAEGIFGGALLGVKSNSGLCFFDWETQELIRRIDIQPKNVFWSENGEMCCITTDESYFILKYVPDNVTAALENKEEMITEDGIEDAFDVLGEIEEIIKTGVWVGDCFIYTNSVNRLNYYVGGEIVTVSHLDKSMYLLGYIPKDNHLYLTDKDLNVVSYHLLLSVLEYQTAVMRKDFDTAKAVLPTIPKEQRNRVAHFLEKQGFKQQALHVSCDPEHKFELAVQIGDLRVAYDIAVEAESEQKWKHLAELAIQKCEFALAQECLYRAQDYAGLLLLASCSGDAQTMEKLAIDAAKNGKYNVAFLAFFSLGRXXXXXXXXXKSNRLPEAAFLARTYLPSQVPRIVKLWKEDLAKTNKKAADSLADPTQYGNLFPDIQEAIRAETYLRPERMALRPAADYSALSSNLERNVLEE 2859
MPLRLD+KR L+ARSDR K+VDLHPTEPWML LYNG+ VW+H+ QTL+K+FEV DLPVR FVARKNWVVTG+DDM IR+FNYNTLE+VH FEAHSDY+RC+ VHPTQP++++SSDDM IKLWDWDKKW C Q FEGHTHYVMQI INPKDNNQFASASLDRTIKVWQLGS PNFTLEGH+KGVNC+DY+ GG+KPYL+SGADDRLVKIWDYQNKTCV+TL+GHAQNVS FHPELPII++GSEDGTVRIWH++T+RLESTLNYGMERVWC+++L+GSNN+ +GYDEGSI+VK GREEPAMSMD++GKII+AKHSE+ QANLK +GD E KDGERLP+AVK+MGSCEIYPQT+ HNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEF WA DSSEYA+R+ S VKIFKNFKEKKSFKPD+GAE I+GG LLGV+S +GL F+DW+ ELIRRI+IQPK++FWS++GE+ CI T+ES+FILKY+ + V AA E E +TEDGIEDAF+VLGEI+EI+KTG+WVGDCFIYT+SVNRLNYYVGGEIVT++HLD++MYLLGYIPKDN LYL DK+LN++SY LL+SVLEYQTAVMR+DF A VLPTIPKEQR RVAHFLEKQGFKQQAL VS DPEH+FELA+Q+G+L++AY +AVEAESEQKWK LAELAI KC+F LAQECL+ AQDY GLLLLA+ SG+A + KLA A ++GK NVAF+++F G+++ CLELL ++ RLPEAAFLARTYLPSQV R+VKLW+E+L+K N+KAA+SLADPT+Y NLFP ++EA E +++ L PA Y ++ N ERNV+EE
Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLGREEPAMSMDANGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSIVKIFKNFKEKKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKYLSEKVLAAQET-HEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIISYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVTPNEERNVMEE 838 The following BLAST results are available for this feature:
BLAST of TCONS_00059500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.