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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059498 ID=TCONS_00059498|Name=TCONS_00059498|organism=Clytia hemisphaerica|type=transcript|length=1630bp
ACTTGCAATCTGGCCGGAATTTTTTCCAACTTTAaactttgatgttttta
aaaataataaattgcGATAAGTTTACGTTGAGAGACGTTTTCGTATAATA
GACGATAAGGAGTAACATAAAAAGAcaaggtttttaaaaaaagacagTAC
ACATTTGAATTGAACCTGATTGCACGTCATTAATTATTTCATCATTTCTC
AAGAATCATTTGATATAGGAAAAGCATTACTTTCGACTCCGTGTAGAAAC
GTAACATCATCCAGGAGCAAAAACGTGTGACACTTCATGCAACCCCGTGG
GTATTGACCTAGGAGTAAAATGTGATCATATTTACATCAATCCGTTAATG
AAATGGGAAATGGAAGGAGGAGCAATGAAGATCAGAATGTCAGCAAAAAT
ACATTTGGCATGTCACTTGTGTACCTACAagctcaaaacaaacaaacaga
caaacaaacaaatatacaacatgaaaagACATACAAAACGATCTCAATGT
TCTATTTGACGCTCGTCGCAGTTGTGTTGGTCCAAGGACGTCCGCAAACT
TTGGAAACTCCATCCAATAAAGTCTCAGATGGTGGCGATACATTAATACA
ACAAGGACGAAATATGTTAGCTGAATTTCTGCTCAAAGACGCTGCACTGG
ACACACACAAATTCAAACAAGACCATGGATGCtataagaacatttataaa
GAGTGTAGCCACGACTCTGCATGTGGATGCCACCTAAAATGCCTTGGAAC
CATGAAGAATAACAGGATTGTTAAACGTTGTATTTCTCCAACTTATCCAC
TCATTCGATGATTGGTTCCTCGTGACGTAATGGTATGTAGGAGACTCGTT
GATTGGCTCAATGTGACGTAATTGTGTGAAAGAGACTTGCTGATTGGCTC
AATGTAAGGAAATTTCGGCAGCAGCATCATTATGACGtataaaaatgtat
aacagCAGGCATACGTCATATTTCTTGGCAAAGTTTACCACATTAGACGA
TCTAAAATTCCGTCTTGCTAAAGGAAACTTCTCTTGTGACAGATGATATT
ATACATGAAATAACGAACTCTGAATTGTTCATTTTGATCTCCTGACAGCA
AGGGATACGAACAAATAACACAAACATTGAAAAGAGTGTAGGACGAACGG
AAGCATGGGagatttgacaaatattgtatGTTCTTTTGGCAAAAAGCTAT
AGACGAAGGGACGTGACgttattttttccgattttACGCGATCAAAACTA
AACCAACCAACCACCCGCACGCACGCCTCTGCGTTTTCCTGGTGAAAACA
ATACCACGAGGGCGTTGGGTTTCATGAGTCGAAACAGAAGAACTATGACG
AGAAAGACAACTAGCAAATTATTGTATGGGTTTCTACACCCATGTAATAG
GGTGGAATTTACTGCTCATTATACAACTATTAAAGTAGAGAGTTTTACAT
AATTTAATTTTTCGTtttaattttagcattttttttcttcctttttgttT
AATTCTACTATATATTTATTTCCCTTTACATATTGTAAATATGCtacatt
ttctattttgatctaaaaaaagtttaagatttaaattaaaagtttaataG
AATCCTTATGTCCGAAGGAGAAGCAGCAAA Run BLAST on NCBI protein sequence of TCONS_00059498-protein >TCONS_00059498-protein ID=TCONS_00059498-protein|Name=TCONS_00059498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MGNGRRSNEDQNVSKNTFGMSLVYLQAQNKQTDKQTNIQHEKTYKTISMF
YLTLVAVVLVQGRPQTLETPSNKVSDGGDTLIQQGRNMLAEFLLKDAALD
THKFKQDHGCYKNIYKECSHDSACGCHLKCLGTMKNNRIVKRCISPTYPL
IR Run BLAST on NCBI transcript from alignment at scaffold_329:97349..102236+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059498 ID=TCONS_00059498|Name=TCONS_00059498|organism=Clytia hemisphaerica|type=transcript|length=4888bp|location=Sequence derived from alignment at scaffold_329:97349..102236+ (Clytia hemisphaerica)
ACTTGCAATCTGGCCGGAATTTTTTCCAACTTTAaactttgatgttttta
aaaataataaattgcGATAAGTTTACGTTGAGAGACGTTTTCGTATAATA
GACGATAAGGAGTAACATAAAAAGAcaaggtttttaaaaaaagacagTAC
ACATTTGAATTGAACCTGATTGCACGTCATTAATTATTTCATCATTTCTC
AAGAATCATTTGATATAGGAAAAGCATTACTTTCGACTCCGTGTAGAAAC
GTAACATCATCCAGGAGCAAAAACGTGTGACACTTCATGCAACCCCGTGG
GTATTGTAAGTTTCTATTCTTCGTACATATGCACctgtttatttcttttt
ataagcattttgatCGCTATAAGCATTACCATGTCTCAGATTCAGACCAT
cttcgcacgtgacggttccgtttcgctctgaAACGAAACGAAGCCATTCT
ATTAgttacattcaagtgttacgtcacttcttaccaatagaatggcttca
ttccgtttcggagcgaaacagaACCGCCATGTGCGAACATGGTCTCAGTG
TCATAGTCgagtctctctaattcgaatatctgtaattcgaatgtctTCAT
AATatgaacaagttttatggtcccctcagctaacaataccttataaacct
tactccatatctTGAAATTTCCATCAAAGGAATTCTAGCTTCCCCGAgct
atggagactccactgtggGAAGTTCTCTGGTATAGAATTTCACTTTGCTT
TGCCTCTCTGTTTCATTACATATCATATCATATTCATCACATATCAAAAg
atcaaattttcagaattttgatGTACATTGTATCACGATAACAACCCGGC
AATCCAGCTGTTTTTAAGGTTGGAATCgtactttatattttatttGCTAA
GTGTGATTAATACCCAAACCTTGATCGATGCTTCAAACCCCTATGTGGAA
GCTATGAATTCATGACAGATTCGAGGAGCATCTGAACTTATATCATCTAG
GGGTTAAATCAGCTGTCACAACTAAATTGAAGCCTCGATTTTTATGTTTT
CCTATCTTTCAGGACCTAGGAGTAAAATGTGATCATATTTACATCAATCC
GTTAATGAAATGGGAAATGGAAGGAGGAGCAATGAAGATCAGAATGTCAG
CAAAAATACATTTGGCATGTCACTTGTGTACCTACAagctcaaaacaaac
aaacagacaaacaaacaaatatacaacatgaaaaggtatttttatTTCCT
ATCCTTGAAACAATACTGAATACCattcttttattttgtcttttaaaaat
ttataagaacactcAAAAGGCTCGAtttgttttgcaaaaaaataatctaC
GAACAGATTAAGGACGctctgaaatatttttaggaaaaattacgcCTTTC
ATATTAGGAAAACGGCTCAGCATGGGTCCTTATAAAAGGTGTACAGAATT
TAAGATCTTTTTTCCTtagttttctttctttgttttgtcaATGGGAAAGT
AGATTATTGATTTCTCATGACCTAACTGTCGCAGCCAGCCCCTCCCCTTT
CACTAAGGGGTTGTGCAGGTAGCGGGGGCTGGCCGTTATTGTGACGCTCT
AATATTAATGAATATTTATATCATCGCAAATTAATTAGATAATCCATTCT
ACTGTACTAGTGACGATTGGTTTGTTAAAAAGAAATCTAAAACGACGATT
ACTCATAGCAACCAAAAACAAATATAGACTGCGTGTCGTGTGttcatttt
tctttcactttttaaaaTCCATAATTCTACTTTCCTCAAACAAATGTCTA
GTAGAGTACATTGTACGGAAATAGACTTTAAAAGATTCCGCATGGCAGGG
TACCAGACTGTGTCTCTCGCGATGTCTCTCGGATGCTCACAAGCTATTGT
TACTCAGAGTTTTTCCTTTGATTTTAGAGTAACGAAAAAGGAGAAACTTC
GACATGATATTGTTAAAcaatacaaaaaaagaaaaagtcattaAGAAAGC
CAAACGAGAATTGATCATCCTTCAATTAATTGCATTCATCAAAAAAACTC
GTTCCGAGATTCATTAACTTATCCTATTGTTTTAATTAAATGTAAAACAA
TAGCAATTAACAAGCGTCAGCTATAAAAGCCGATGGCTTTGCCATATCGT
CTTcagttcattttattttattttactcgAAAAAACGCTGGTCGTTTCAC
TTGAAAGAGCGCTGGTCGCCTTTCCATCAAAtatcaatcaaaaaaaattt
accaagCGCTTATTAACCTTATTTGGCATAATTTTGTTGACATCAGCAAA
AAATGGTATGTATGTATTtgatttttatatgttttttccTTTATGAAGGA
ACTTGTAGTTTGACAGATTCGGATAAGAAAAGGGTTCAAATTTTATACGA
TAGAGAGTGTTAGAATCATTAATAATTCCTTATTTGGAAATTCACACTCT
CCATTCTAAAGCTAGAATCTCCTTTTAGATTGCGTTGCATTTGCAGTCTA
TCATATTTTGACAGACATAACGGTTGTTTTGGAGAATTTTCTAGCCTACC
GCCCTCTTTGCTTTccgtcaaaatatttttctaaaggttCTAGTGCCAAA
CACTTGACAAGCGACGTGATTAGCTAACAATTGTTATTTTACTCCCTGAA
TTTTTCGCCTTTTAAGTCAAAAATGTACATGTTATCTTTAGATTCAGGGG
GTTAGCAGTTACGCCACCCTTAGGGTTGAAAGCATTCCAAGGTCTCTTAA
ATGAAAATCGGTATTAACGATTCGGTTTGGTTTTAAGTGCCTTATCAACA
GTAACAAATATTGTTCATTCTTTTCCAAAACCCAGACATACAAAACGATC
TCAATGTTCTATTTGACGCTCGTCGCAGTTGTGTTGGTCCAAGGACGTCC
GCAAACTTTGGAAACTCCATCCAATAAAGTCTCAGATGGTGGCGATACAT
TAATACAACAAGGACGAAATATGTTAGCTGAATTTCTGGTAAGTTCCTGA
CCTCATTTTCTTTCCTCTCTTACGCTGACTTGAATGCAACGCCGTTTGAT
ATCATTCTACAGTGAAGTGGTAACTTCAACAAGTTTTCTGCTCGCTTCAG
TTAAAAATGTCTTATAAGCATCACTccgtaactcgaaatttccttaactc
gaacaaatttgtgttccccatgcgtgttcgagttatggagactccatttG
TAACATGTTAATATACATGGATGTACCAAGGATGTAACTGTGACGTTTAT
TTGCGCCATGCTTTGCAATCTGGTAAATACTAGCGTTCTTCTTAAGCGCA
CTTCTAAAGTCCGCTAGAATACACGCCCCTAAATTTATCAGGACCTTCTA
AAACAATGCGTGACCTCGCTGGCGGCGAAAACCGAAAATGTTTATACATC
AAACTTCGCTACCTATAATATGCTAATTGAGAAAATGGGGTCGATTATTT
AGTCATTTTCATATCAGATTAGcattttctttttcctctttaCGCCCTTA
CAAAACTAGAAACTAATTCAGTTATACGCGTTTTCaaagaaacataaaaa
ttaacatGATTGGAAcactgtttttttcttcttaacggtgtgtaatattt
tctttttgataggGGCAATTATATCACCTACGCACTTTCACTTAAAATAT
GTTTCTTAGTCAGCCCTTTGTTCTTAAATGAGTTGTAACCGGTTACTAGG
TTTAAAACACATAGACGTTTTCTTCCGGCAATCTTTCCTTACACAAGGGC
TCTCGTGCATTTTTGAATGCACCTTCCATTTGCACAAAACAACCACCCAC
CCTCCCACTATCATTCAAACCACTTTGataattttaatgttttctATACA
TTGACCAGTTgaattcaatttcttttgttacCCTTTTAGCTCAAAGACGC
TGCACTGGACACACACAAATTCAAACAAGACCATGGATGCtataagaaca
tttataaaGAGTGTAGCCACGACTCTGCATGTGGATGCCACCTAAAATGC
CTTGGAACCATGAAGAATAACAGGATTGTTAAACGTTGTATTTCTCCAAC
TTATCCACTCATTCGATGATTGGTTCCTCGTGACGTAATGGTATGTAGGA
GACTCGTTGATTGGCTCAATGTGACGTAATTGTGTGAAAGAGACTTGCTG
ATTGGCTCAATGTAAGGAAATTTCGGCAGCAGCATCATTATGACGtataa
aaatgtataacagCAGGCATACGTCATATTTCTTGGCAAAGTTTACCACA
TTAGACGATCTAAAATTCCGTCTTGCTAAAGGAAACTTCTCTTGTGACAG
ATGATATTATACATGAAATAACGAACTCTGAATTGTTCATTTTGATCTCC
TGACAGCAAGGGATACGAACAAATAACACAAACATTGAAAAGAGTGTAGG
ACGAACGGAAGCATGGGagatttgacaaatattgtatGTTCTTTTGGCAA
AAAGCTATAGACGAAGGGACGTGACgttattttttccgattttACGCGAT
CAAAACTAAACCAACCAACCACCCGCACGCACGCCTCTGCGTTTTCCTGG
TGAAAACAATACCACGAGGGCGTTGGGTTTCATGAGTCGAAACAGAAGAA
CTATGACGAGAAAGACAACTAGCAAATTATTGTATGGGTTTCTACACCCA
TGTAATAGGGTGGAATTTACTGCTCATTATACAACTATTAAAGTAGAGAG
TTTTACATAATTTAATTTTTCGTtttaattttagcattttttttcttcct
ttttgttTAATTCTACTATATATTTATTTCCCTTTACATATTGTAAATAT
GCtacattttctattttgatctaaaaaaagtttaagatttaaattaaaag
tttaataGAATCCTTATGTCCGAAGGAGAAGCAGCAAA Coding sequence (CDS) from alignment at scaffold_329:97349..102236+ >TCONS_00059498 ID=TCONS_00059498|Name=TCONS_00059498|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_329:97349..102236+ (Clytia hemisphaerica)
ATGGGAAATGGAAGGAGGAGCAATGAAGATCAGAATGTCAGCAAAAATAC
ATTTGGCATGTCACTTGTGTACCTACAagctcaaaacaaacaaacagaca
aacaaacaaatatacaacatgaaaagACATACAAAACGATCTCAATGTTC
TATTTGACGCTCGTCGCAGTTGTGTTGGTCCAAGGACGTCCGCAAACTTT
GGAAACTCCATCCAATAAAGTCTCAGATGGTGGCGATACATTAATACAAC
AAGGACGAAATATGTTAGCTGAATTTCTGCTCAAAGACGCTGCACTGGAC
ACACACAAATTCAAACAAGACCATGGATGCtataagaacatttataaaGA
GTGTAGCCACGACTCTGCATGTGGATGCCACCTAAAATGCCTTGGAACCA
TGAAGAATAACAGGATTGTTAAACGTTGTATTTCTCCAACTTATCCACTC
ATTCGATGAATGGGAAATGGAAGGAGGAGCAATGAAGATCAGAATGTCAG
CAAAAATACATTTGGCATGTCACTTGTGTACCTACAagctcaaaacaaac
aaacagacaaacaaacaaatatacaacatgaaaagACATACAAAACGATC
TCAATGTTCTATTTGACGCTCGTCGCAGTTGTGTTGGTCCAAGGACGTCC
GCAAACTTTGGAAACTCCATCCAATAAAGTCTCAGATGGTGGCGATACAT
TAATACAACAAGGACGAAATATGTTAGCTGAATTTCTGCTCAAAGACGCT
GCACTGGACACACACAAATTCAAACAAGACCATGGATGCtataagaacat
ttataaaGAGTGTAGCCACGACTCTGCATGTGGATGCCACCTAAAATGCC
TTGGAACCATGAAGAATAACAGGATTGTTAAACGTTGTATTTCTCCAACT
TATCCACTCATTCGATGAATGGGAAATGGAAGGAGGAGCAATGAAGATCA
GAATGTCAGCAAAAATACATTTGGCATGTCACTTGTGTACCTACAagctc
aaaacaaacaaacagacaaacaaacaaatatacaacatgaaaagACATAC
AAAACGATCTCAATGTTCTATTTGACGCTCGTCGCAGTTGTGTTGGTCCA
AGGACGTCCGCAAACTTTGGAAACTCCATCCAATAAAGTCTCAGATGGTG
GCGATACATTAATACAACAAGGACGAAATATGTTAGCTGAATTTCTGCTC
AAAGACGCTGCACTGGACACACACAAATTCAAACAAGACCATGGATGCta
taagaacatttataaaGAGTGTAGCCACGACTCTGCATGTGGATGCCACC
TAAAATGCCTTGGAACCATGAAGAATAACAGGATTGTTAAACGTTGTATT
TCTCCAACTTATCCACTCATTCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00059498-exon-scaffold_329-1491911889:97349..97653 | TCONS_00059498-exon-scaffold_329-1491911889:97349..97653 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1510915933:97349..97653 | TCONS_00059498-exon-scaffold_329-1510915933:97349..97653 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1575043694:97349..97653 | TCONS_00059498-exon-scaffold_329-1575043694:97349..97653 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1491911889:98411..98583 | TCONS_00059498-exon-scaffold_329-1491911889:98411..98583 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1510915933:98411..98583 | TCONS_00059498-exon-scaffold_329-1510915933:98411..98583 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1575043694:98411..98583 | TCONS_00059498-exon-scaffold_329-1575043694:98411..98583 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1491911889:100184..100336 | TCONS_00059498-exon-scaffold_329-1491911889:100184..100336 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1510915933:100184..100336 | TCONS_00059498-exon-scaffold_329-1510915933:100184..100336 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1575043694:100184..100336 | TCONS_00059498-exon-scaffold_329-1575043694:100184..100336 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1491911889:101238..102236 | TCONS_00059498-exon-scaffold_329-1491911889:101238..102236 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1510915933:101238..102236 | TCONS_00059498-exon-scaffold_329-1510915933:101238..102236 | Clytia hemisphaerica | exon |
| TCONS_00059498-exon-scaffold_329-1575043694:101238..102236 | TCONS_00059498-exon-scaffold_329-1575043694:101238..102236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:97349..102236 + |
Blast
The following BLAST results are available for this feature:
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