TCONS_00059487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059487
Unique NameTCONS_00059487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059487 ID=TCONS_00059487|Name=TCONS_00059487|organism=Clytia hemisphaerica|type=transcript|length=818bp
aTATAGGGATAATACAACACGAGATATTACACGCTTTGGGCTTCAATCAT
GAACAATCACGAACGGACAGAGATAACTTTGTTGAAATTCAATGGGAAAA
TATCCAGGCTGGAAAGGAGAGCAACTTCAAAAAGATGAGTGATATGACTT
TGGTTAGCCAAAAATCGAAATACGATTATGAATCAGTGATGCATTTCTCG
AATAAGACATTTTCATGGAATGGGAAAGAAACAATTGTAGCCGCCAAAAA
TGCTATTAATCCACCTGCCACTTTTGGTCAAAGGGATCACCTAACAGAAT
TGGATAAAGAAGAGTTACGAGCAGTCTACGGCTGCTCAGGCTCGCCTCCT
CCATCAACAACAACCACGacgacaacaacaaaaaaaccaCCAACGACTAT
AATAACTCAAAAACCTCCAACAACACTTTCTACAAAAGAACCCGGAAGAC
CAGATGAAAATCTATTATGCAAACTTGTAACAGGTGATGCAGACAATGGC
ACGGTGTGCAATGCTACAAACTTTAatacaacaagtatcaaacgAATATA
TGGCGACGGTAAGTTAATATTTACACATTTCATCATTCTACGCTACTGAG
GTGTTTCAAGTTCACTGTTACATAATTTCCGCCACTGTACGAAAAAAACC
GGTGAGGTGATCATTAATGGtctgttctgacgagacagggttAAAATCAC
GGTCATCTAACATGTTCTTTTATTGTCtaagtaaccctagaaagcgtCAG
AACAATCTTTTGAGGAGACAGTGGTATAATCAAGAGTAAGATAGTATAGT
CTTATTGCCAAGTAACCC
Run BLAST on NCBI

protein sequence of TCONS_00059487-protein

>TCONS_00059487-protein ID=TCONS_00059487-protein|Name=TCONS_00059487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
IGIIQHEILHALGFNHEQSRTDRDNFVEIQWENIQAGKESNFKKMSDMTL
VSQKSKYDYESVMHFSNKTFSWNGKETIVAAKNAINPPATFGQRDHLTEL
DKEELRAVYGCSGSPPPSTTTTTTTTKKPPTTIITQKPPTTLSTKEPGRP
DENLLCKLVTGDADNGTVCNATNFNTTSIKRIYGDGKLIFTHFIILRY
Run BLAST on NCBI

transcript from alignment at scaffold_328:40431..50939-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059487 ID=TCONS_00059487|Name=TCONS_00059487|organism=Clytia hemisphaerica|type=transcript|length=10509bp|location=Sequence derived from alignment at scaffold_328:40431..50939- (Clytia hemisphaerica)
ATATAGGGATAATACAACACGAGATATTACACGCTTTGGGCTTCAATCAT
GAACAATCACGAACGGACAGAGATAACTTTGTTGAAATTCAATGGGAAAA
TATCCAGGCTGGTAAGATTAAAATTTTTTCAATCGTAGCATATGCTCAAA
TGTTTTCGTGTTGGTTAAAATTAAATGATTGAGGGAGAAATGTTTGTCGA
AACTTAGTCAGTCATTATAAAAAATCCCAGTCTGGTAATGTACAGGGTGT
CCCTAATTACAGTATCGAGTTTGAACATGTGATTGAGTAGAAAAGTTTGT
GTGTGTTATCGCTAAAATATAAGAACGTTCTCCATCACACAGGCTTATTA
CAAAAGGTAGTTACAACATATAAATTAGTCGTAATGACAAAGAAAAAAGA
GGGAGAGCTTAAAATACAATTTTGTGAACACGCACATAAAACTTTCTACT
CATATTTGTGTTTCGACTCGATACTTTAATTAGGGACACCCTGTACAGAA
AGTTCTTGTTTGTGTTTCACTAGATTTGCAACGTTTATCAAAGGATCTCT
TTGTGTCATATTAATTGACACATATTTTGTGAATAACTTTTACAAAAAAA
CAAGTCTAAATAATTTTAACGTTCATGAAAACTGTAAACAGAGTTAATTC
TTTTTAACCATAATGAATGTTGTAAAAATGATTATTGTAATGGTGTTTAT
TTTTTAACATTTTGTAAAACACACGCAGCAACCTTTCACTCAGAATCATG
TTCGAACTCGATACTTTTTTTCGGGACACCCTATACAGGAAAAGTATCAT
ATGAAAATAGTTCAACATTTTACCCAGGACCACAGAGGAATTTTACAGGC
CAATGATGTCAAAACATTTGATTGTCCGTTTAACCCTACCTAATGAGAGC
TATTTGGGTCCCTTAGAACTGAAAGGGGGGGCACATAGTGCCCCCCGTGG
ATAACTTAGGATAGGAACATTATTTGGTCATGAAATTTGGTACNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNACAATGTACTAAATGGAAATTAAAATCTAA
ATCAACAATTTTGTCGTGACGTTCTACTATAGCGCGCCAAAACCGAAGAA
AATGTTTTAAACTTTCAAAACCGTGTAAAATCAGAACATTTCAACTTTTT
CAAGTCTGTGATACTTTTTTTGCCATATTTATATTTATTTTTTGCTGCTA
ATTCTACTTTAAGATGTAATAGAAGCAGTACAAATGAAATGGACCATTAA
AGTATACCTGGTAACATGTTATAGTATCTTGAAGTAAGCACATAAAAAAG
AGCAAAATAGCCTGCGCTGCAGTTGTGGGATGGTAGTGGTCACCGACAAA
CCTGTCATTAAGACTAAAATAATTGACCAATGAAAAACATTTTTTAACCA
AAACATTCCCCATAAAATTTGATGAAAAGTCATAAAATTTCAGCTTCATA
GCCTCACTAGTTAAAAAATCCCAGCCAATTTTCTAACGGGGGGGGGGGGG
GGGGCCCCAAACCCCCCCCCCCCCCCTGGGGGGGGGGGGGGGGCCCCAAA
CCCCCCCCCCCCCCCTGGGGGGGGGGGGGGGGCCCCAAACCCCCCCCCCC
CCCCTGGGGGGGGGGGGGGGGCCCCAAACCCCCCCCCCCCCCCTGGGGGG
GGGGGGGGGGCCCCAAACCCCCCCCCCCCCCCCTCACAGTAGGTAGGGTT
AAGCATTTGTATCACAATTTGTAATCTCATGGTTATGAGGGAAATTCGGG
ATAAATTTCCCGAGGACAATCTTGATATTTTTAAAATTTAAAACATTTCG
AAATTGGACCGAGGTTAATTTATCCAAAATTTCACCAAAACAAGCATGGG
ATTCCTGGTTAATGTCATGGTTTAGATTGAAATTCTAACAATCGAATTTC
AATCAATCATGAGATTATTGTTTTCAATTCACTTTTAGGAAAGGAGAGCA
ACTTCAAAAAGATGAGTGATATGACTTTGGTTAGCCAAAAATCGGTATGT
AGCTTAAATTATCTTAACATTTATTTAATATCTATTTTAGGTGAGATAAA
TATTTACTGGTTTTGATTGTACAGGGTGTCCGGAAAAAAAACTGACAAGT
TTAACCCTTTAAGTCCCTTTAAGTCTCTCTAAGTTTTTTAAAGAAAATCG
CTAGTTCAAACTTTAAAGGCTTATATCTCCGGATCTAGAAGGAGTGAGAA
GCTCGTTTGCGGTCGGTTGGATAGCTTAGAGTCTCCTCTTTCTTTAAGGC
GCCACCCGATTAAGGAAGGGCGGGGTGGACGGCAGCTAAGGATGGGGAAG
GTAAGGGATCAATTTAATCAGAGCCAAATTGGGAGGTTCTTGGATCACTC
GTTGACCAAAAATGATTAACAAACGGTAAAAATCTTAAAAAAGTGGATTT
TGTCAAATTTTTGCATTATTTTGACTTATTAGCTTAAAATCTCGCTGAAA
AGACTCACTTTTGATTTTTTTTTGCTTGGTCATCTTTTTTAAGATTTATC
CGTTTTCTACGAGTTAGACCAAAAATGACAATTTCTAACTCAAACTGGGC
ATACTAGCCCATGTCTGATATATACGACACTGGCACTTAAAAGGGTTCAA
GAAGGTGAATAAAAAATTTGAAAATGTGATTTTGTTGGTGTTTTTCAGCT
TTTTTGACTGAGTATTTTTTAAAAAGAATAATTTTTGCATTTTTTTTTAA
AAATACGTCGTTTTGTACATTTTTGTGCGAGTGTCACGTGGTTTCTATAA
TTTTGCTAATTAATTAACGAAAGAAAAAAAAACGAGAGAAATAAATTAAA
AAATTAAGTCAAGTCGACTTTAAATAAGCTTTCGAACTCTATAAATGAAC
CCCCACTTTATACAGAAGAAACGATAACATTTTGTGCTATTTCACATGAA
ATCATTATTATTTGAATTAAGAGTGGCAGCAAATTAACCCGTTTTTGTCG
AATTTTAAAATTAGGGTCGGCAAAATTTGCCATACTCAAATGATCGAGTC
GAGTTTAAATAAAATTTTGGTTTTAACGACGCTTTTTTTGTTGAACTAAA
TTCAAATTAGGAGTTTTTGCACTTTGCTGAGTTAGGCAAAAGAGCAGTTG
TATAAACTACGCCTAATAAGCTACGCCTGAGTTTATTTTCTATGATGTGA
TTAGAAAAAAATCCAAATTTTTATTTACACAACAAATGATAGATCCACTA
TCTAAAAAATTCCCCACAAACATGAAGAAAGCAATACAGAGCTGTTAATG
AAGGCCAAAAACTACCTTTCCAAAAGAAAAAGTTTAACAACTGAACCCAA
AACTAGCAAATCAATCCAAAGAAAAATATATAAGACAAAATTAATAGTAA
AGATTATCGATGGAAATAGTTCAAAACAAATGCTCGAATACTACCACTGT
CCAAACCTAGTGTAAAAACTGCCACTTAGTACACATCCATCGACCCAATG
CCACACACCTAAATAACCATTTCCATCCGACATACACATGAAAAGACAAA
TCCAATAAAATGACAAATCCGATACCAATATTGTAAGGGTACATAAGTAG
CTCAGTTTCGACCCTTGTTGCTGGACTGACTTATGTCGAGATAAGCAGCT
AAAGTAAAATGAAATTAGGATTGGAACTGCGCTAAAACTTTCAATAAAAT
AAAAATTCAATAAAAATAAACACACTATCATGAGCAATCACTTGTTTATT
TGGCAATGTACTATAGCACTCCCTAAAGACGCTTTCTTTTTCCGAGACAA
TAATAAACGTTTTGATCCAAAGTCTTGATATTCAAGCTGGAACTTTTTTA
ATTTTAGCAGAAAACAATATAATTTTAACGAAAAAACTGTATTTTTAGAA
ATTGCAAATTGTAATATCTCGACTTTGGAAAATACATTAAACAAAATTGG
GTGTCTGGTATGTGGACGAGATAGAGTTTTTACAAGCTCTTATTTGATTT
GGTTGGTCCATACACAGTAAAAAATTTTCGATTTCCAAGGTTGGAAATTC
AATATTTTTGGGTTGGAAATTTTGGTTTTATAATTGAAGGTTGGAAATTT
GAGTGAAATTCTTCGATATCTCTTCTGTTTCGCTGTTTTCATAATCAAAC
ATAACCTAAGGGACTCCTTTAATCTAATGAGCCTCTTCCCTGGANACTTC
CGTTTCGCTGTTTTCATAATCAAACATAACCTAAGGGACTCCTTTAATCT
AATGAGCCTCTTCCCTGGACTAAAAACCTAACCTCCCTCGAGGCTACAGG
GGTCAGTCTAATTCGCCAATCTGACGGATCTTTTGGTAGGACAAAAAACC
TTGGTTCGTTAATAAAATAATAAATCTCTTATTGTCTTCTTCTGTTCTGT
TTCGTTCTCCTCCATCGCTTGATAGGTTATTCGGTCCCTATATTGTCGGC
AATCGCCGTATGTTCATACGAATGAAAATTAATGTAATCGATTAATGAAG
TTTAAGTACACGACCTTGCGTTGCAAATAAGATGTCAAGTCTACACCGTT
CCTCCCTTTTATAACGTTTTGTACCATTTTCTGCGCATGTCCTTTGAGAA
AACCACAAGCAATTTTTCGCGCAGAACTATCGTGATAGCAAACCTAGATA
TTGGGCTTTAACGTGAGCAGTCAAGCTATAAGTTTCCGTCAGGTGAAGCA
TCCCTTCGGAGCGGCCTCGGTCAATCGCAGTGAGTTCGCACAGTGAAGCA
CATAGGGTACTTGTGTCATAGTTTCAAATGGTTCTCTCCTGAGCTGTGTG
AGTATTCTAAGATCAACCACGTATCTGTGCGAATAATAACAAGATATTGA
CCGGGAGCCATCGAGCCTAGGATAGCAAGTGACTGTTCACAAGAAAAACC
TTGTTTAAGATCTTTCTTTCCACATATCTGTCATCACTTTTTGGATTTTG
ACTTTTTTTAACCTGGATTTTTGAAAATTCCAACATTTTTTAGGTTGGAT
TTTGGTTTTATTCAACCTGGATTTTTGAAAATTCCAAGCAATGGAAAATG
CAAAATTTCCATCCTTGGAGAGTGTCCTAAGTTTCCAGGTTGGATTTTCC
ATTGGATTTTTTCTATTTTACAACTAAGAAATCTTGAAATCTTCAACCTT
GGAAATCGAATTTTTTTCCTGTGTTAACCAGCAATAAAGTTACTTTTTTC
TAATGAACGCTTAATTTTTATTTGTAAAAAGAATAACCAGAAGCTTCATG
TTTTTGATGTTTTTAATAACTATACTGTGTATCCAGAAAAAAAGTATCGA
GTCGTACCACTTTTATAGGAAGAAAGTTCTTTTGCGTGTTTCACTAAATT
TGCAATTTTTATCAAAGTTTTTCTCTGTGTCATATTAATTGTCACGAGAC
ATCTTTTATGGAGAACTTTTACAAAAAACAATTCTCAATAACTTTAACGT
CATGAAATTGTAAAGGAAGTTAATTCTTTTTAATCATACTGACTGTTTCT
ACTCAGAATCATGTTCCAAATCGATACTTTCTCTCTAGACACCCTGTATA
TTCGACGTTCACTACAAGAGGTCATCTTCAGAGTAAAAAATCTAATAACA
AACGAAATCTTTTAAAAACTAATTTTCAAAAATGACCAGTAAAATAGTGC
TAAAAATACAATTACAAACAATGCGATAAAACGATAGAAAATAAACCTTA
GGGACTAAAATGATTGAAACGTGCAAATAAGAAAGTATCGAAAAGTAATA
ATACAAAAAAAGCAAAAAAAGTTGCAAAAAAGAATATGTCGTAAAAAGCT
GTATTGTTTTAAACAAATTCTGTACATTAAGTGTAGGTTTCTGATCGATG
ATTAAAAAAGGTTCAGTCATCTTTCTTATTTCATTGGGTGCTTTTTCACT
ACGCTAGATAGATAAGTGGTTCTCATCGACGGTCCTTTCCATAAATTTCT
AAGGANGCAAAATTTTCTACTTTTTCCCCAAATTTTCCAAAAATAGGCAC
CCTACGAGGGACTGATTTTTCTAAAAACCAATCCTGTACATAAAGTGTAG
GTTTCTGATCGATGATTAAAAAAGGTTCAGTCATCTTTCTTATTTCATTG
GGTGCTTTTTCACTACGCTAGATAGATAAGTGGTTCTCATCGACGGTCCT
TTCCATAAATTTCTAAGGATTGTAAAAAATATACAATGAAGATTCGTGCT
TAACATCGGATTTTGATCGCTTCATATCAGCATTCCATATTTAACGTCGA
AAATTGGTCATTAAACCTTTTGTCCTCCAAGAGAAGGGTAGACCTCTCTT
GGCTTAATGACCAATCAAGCGAAAAAGGCAGCATAAATAAATTGGTTGCC
ATAAAAGTAGCAGAATGTGCAGAGGGATTCTTTTGTAAAAAATTGGTCAT
ATGGGAANCGTTGCTCAAAATGCCAACGAAATGCCAACACGTTGGCATCA
TTAGGCATTTGACAAACCGAACAATTGCGCGGAACAATAGAATTCAAAAG
AATACTGCAANGCCGATAGAGGCTGCGTTTACACCAACTGGCATTTGTAA
TTTGGCATTTGCTCATGAGAGATTCGATTTTAATAGCTTTTCCATTGTAT
TTTCTGTCATGGCATTTAAGGAATNTGAAGAGCAAACTTTCATCTGTATT
GATTTGACACAAAAGACGAGGAATCTTGTCACAGAAAATGTTCATTAGAA
GGCTGCAATTCTAAATCCCTTGATGGTCCTTGATATGCGAGTTGATGATT
TTTAATAAAATTTTCTTCAAATTCAAAGGGTTGTAAACGCTTTGACAACT
GTTTTGGGAGTCAGTAATTGTTTCCTACCAATTTTCTTTGTTTCAGCTAA
TCGATTTTCGCCAGACAGTCTCAGTGAAAAAGCACCCATTCTTTTTGAAT
CCCTTGGCAATTGTTTTTTATTAGCTCAAATGACCGATTATTAAAGTATC
TTTCTCTATCTCATTTGCTGATATGTGCGATTCACATCCTCGAAAGTCTC
TCTAATAATGGCTACAAAAAACCAATTTTATCTCTAAAAGGGACCAAAAT
GACTTTTAAGGGCGGAAGGGCGACACAAAGCCGTACCTTCATTTGCCGAA
AGATCATGATGTGGTGGAATTTGACAAAAATCTTTTGGGAAAAGTCTCTC
TAAGGGCCCCAAAAAAGTAGATTTTCTATTTGTGGCCCGAACACACCCGT
CACCTTCTCAAAGCTAATACCTACCCTGAGTATCAGAGGCTGATTTTTCA
AAGAACATTATAAACATCTGACGACCAAGTATAATAGTTTTTATTGTAGG
TTGCGGGTTGTTCTAAATCGTGTTAGCCACCCTTCGTCCTCATAAGCGTA
AATACATAATCTCGGGTATGATTTTGGTATATGCTTTTCACTGTAACTAA
TACCCCACCCCGAAAGAGATTTTACTCAGGACCACGGATGGTTTCTGCAA
GCCAAATATCTCAAATCATCTGATTAACCCTTTATTTATTCACCAGAAAT
ACGATTATGAATCAGTGATGCATTTCTCGAATAAGACATTTTCATGGAAT
GGGAAAGAAACAATTGTAGCCGCCAAAAATGCTATTAATCCACCTGCCAC
TTTTGGTCAAAGGGATCACCTAACAGAATTGGATAAAGAAGAGTTACGAG
CAGTCTACGGGTAGGTGTCAGTAATTGCCATTGCAGTGAGCCTAAAGTTC
TTTAGGATGGCTTTCATAGTTTCACGCATACCATAAAAATGTTTCAAACA
ATTTCCATCCCGTAGAGTGGCTGATTTAATTTCTTTTTGATTTTTTTTTG
ACCCATAAATATACTTTTTGAGACAATAAAACCAACCCTTGCAGTTCGCA
CTTACTCAACATCCATTTTTGCCTAACTACCCACTCCCCCCCTCGGGCAC
GCATAAGAAAGATGGGAAAACATCGTTTTTCAGTATTAATAATATTTCAT
AAAAAGTGTCTCGGTAGCATTCCTGTCTTAACGGTTACTCCATTACTTTT
TCTGAGTTATTTTTATCTGATCACCAATAGCAAAATAGATATAGATATGA
GCCCTCCGAATGCATTCGGGATGGGTCCTACCAATGAAGCAGTAGGAATC
ACAGCGCTGCCAAATACTGCAACTTGACAGACGCGAGCTGCCAAGCCTGG
GCGTATACCATAACACTCGAACGAAACTGGGAGAGCGGTGCTCACGCTAG
GCCGAACCTCATGAGTGTCATGGATCGTCACAATGTCTGTCTAATCTACA
CACACTCTTGTATCAGAGTAATGGTACCCAATTCCCCTAACATGGCATGG
GTTGACCCAGGCGAAGGTATATTCACTTGCCAAGTGAATCGTAGAGACAC
GGTGGGTATCGAACTCGTGCCTCCCAGGCGAGAGTCAAGTATGATAACAT
TATACCACTACGACTAGCAAAAGTATTAACTAAGATAAGTGTGCACTCTT
TTTTTTTAACTATAACTTTTGAAGGAATTCTTTAATCTTTATAAATTTGG
TATCGTTGGAGAGATATTTGTCAGATGGAACAATTTGAAATAGAAAGATG
TCTTTAAAAAAATTCTAAAAACGAAGACGGAAAGAAGAAAAATGAAGATC
TTGTAGAAAGGTGCTATAACTTTCATTTTCACTGGAGAGATTTTTTGACC
TTAGGAGGTCATCACTGTAAAGTAATTTCACTAAAATATTTATTCAATAT
AAAGTTATGATTCAAAGTTAATAAATGGTTGACCCCAAAAACAGCAGAAA
ACAGCAGAAAGCAGCGTTTTTAGACGTCAATCAGCTTCTAACTTTGTTTG
ATATCTTTTGACTGAATGGTTATTTTTGAGATATTTTTTCACAATGATGA
CGTTCGATGCTCAAGGATTCATTTCAGTGAAAATACTAGTTATAGCACTT
TTCTACAAGATCTTCTTTTTTTCTTCTTCGTTTTCATCTTCATTTTTAGA
ATCTTTTTAAAGATTTTTTTTATTTCAAATTGTTCCACTCATTAATATCT
TTCCAATGACACCAAATTTATAAAGATTGAAGAATTCCTTCAAATGTTAT
AAAAGAAAAAAGAGTGCACACTTATCATAAATAGTAATTAATCCCACCTT
TTATTACCACTAAATAATGAATATAAGAAGGTGCCCTTTTATTGGTCAAG
TCTCTTTATTAAAAGCAAGTACTTAGGTAAGTCAAAAATGTATGTCTCAT
ACAATATGTGAGAATCGTTACAGTTAAACGATATCTTCAAGAAGAAGAAC
TAGTAAGATTTTTGCCTTCAATTTCTCATGCTTCAATACTCTTGTCTCCC
GAATAGACGTCCCTCCGCTTATTGTTAAGAGAAAAAAAATCCATCACCCC
GCTCTTATTAAGACCCCTCGCTAATTAAGACCCCCCCCGCTAATTAAATT
CAATCCTTTTCTATATTATTTGGAGCGTATAATTCATTTCCAGGACAGAT
TTCCCTTCAAAAAGGACTTTGAAAAAACTTTTTAAGGTACTAAAAACATG
AATTCTGTATTGCTAATTGTTTCAACATGGTATCCTCATGTTTATGTTTC
CTAGTCAGGTTCTTACCGTAAATTTTCAAATTTACCATTTTAAACTATAG
CTGCTCAGGCTCGCCTCCTCCATCAACAACAACCACGACGACAACAACAA
AAAAACCACCAACGACTATAATAACTCAAAAACCTCCAACAACACATTTT
ACAGAAGGACCGACAACAACAAAAAAACCACCGACGACTACAATAACTCA
AAAACCTCCAACAACACTTTCTACAAAAGAACCCGGAAGACCAGATGAAA
ATCTATTATGCAAACTTGTAACAGGTGATGCAGACAATGGCACGGTGTGC
AATGCTACAAACTTTAATACAACAAGTATCAAACGAATATATGGCGACGG
TAAGTTAATATTTACACATTTCATCATTCTACGCTACTGAGGTGTTTCAA
GTTCACTGTTACATAATTTCCGCCACTGTACGAAAAAAACCGGTGAGGTG
ATCATTAATGGTCTGTTCTGACGAGACAGGGTTAAAATCACGGTCATCTA
ACATGTTCTTTTATTGTCTAAGTAACCCTAGAAAGCGTCAGAACAATCTT
TTGAGGAGACAGTGGTATAATCAAGAGTAAGATAGTATAGTCTTATTGCC
AAGTAACCC

Coding sequence (CDS) from alignment at scaffold_328:40431..50939-

>TCONS_00059487 ID=TCONS_00059487|Name=TCONS_00059487|organism=Clytia hemisphaerica|type=CDS|length=2985bp|location=Sequence derived from alignment at scaffold_328:40431..50939- (Clytia hemisphaerica)
TTTCTACAAAAGAACCCGGAAGACCAGATGAAAATCTATTATGCAAACTT
GTAACAGGTGATGCAGACAATGGCACGGTGTGCAATGCTACAAACTTTAA
TACAACAAGTATCAAACGAATATATGGCGACGGTAAGTTAATATTTACAC
ATTTCATCATTCTACGCTACTGACTGCTCAGGCTCGCCTCCTCCATCAAC
AACAACCACGACGACAACAACAAAAAAACCACCAACGACTATAATAACTC
AAAAACCTCCAACAACACAAATACGATTATGAATCAGTGATGCATTTCTC
GAATAAGACATTTTCATGGAATGGGAAAGAAACAATTGTAGCCGCCAAAA
ATGCTATTAATCCACCTGCCACTTTTGGTCAAAGGGATCACCTAACAGAA
TTGGATAAAGAAGAGTTACGAGCAGTCTACGGGAAAGGAGAGCAACTTCA
AAAAGATGAGTGATATGACTTTGGTTAGCCAAAAATCGATAGGGATAATA
CAACACGAGATATTACACGCTTTGGGCTTCAATCATGAACAATCACGAAC
GGACAGAGATAACTTTGTTGAAATTCAATGGGAAAATATCCAGGCTGTTT
CTACAAAAGAACCCGGAAGACCAGATGAAAATCTATTATGCAAACTTGTA
ACAGGTGATGCAGACAATGGCACGGTGTGCAATGCTACAAACTTTAATAC
AACAAGTATCAAACGAATATATGGCGACGGTAAGTTAATATTTACACATT
TCATCATTCTACGCTACTGACTGCTCAGGCTCGCCTCCTCCATCAACAAC
AACCACGACGACAACAACAAAAAAACCACCAACGACTATAATAACTCAAA
AACCTCCAACAACACAAATACGATTATGAATCAGTGATGCATTTCTCGAA
TAAGACATTTTCATGGAATGGGAAAGAAACAATTGTAGCCGCCAAAAATG
CTATTAATCCACCTGCCACTTTTGGTCAAAGGGATCACCTAACAGAATTG
GATAAAGAAGAGTTACGAGCAGTCTACGGGAAAGGAGAGCAACTTCAAAA
AGATGAGTGATATGACTTTGGTTAGCCAAAAATCGATAGGGATAATACAA
CACGAGATATTACACGCTTTGGGCTTCAATCATGAACAATCACGAACGGA
CAGAGATAACTTTGTTGAAATTCAATGGGAAAATATCCAGGCTGTTTCTA
CAAAAGAACCCGGAAGACCAGATGAAAATCTATTATGCAAACTTGTAACA
GGTGATGCAGACAATGGCACGGTGTGCAATGCTACAAACTTTAATACAAC
AAGTATCAAACGAATATATGGCGACGGTAAGTTAATATTTACACATTTCA
TCATTCTACGCTACTGACTGCTCAGGCTCGCCTCCTCCATCAACAACAAC
CACGACGACAACAACAAAAAAACCACCAACGACTATAATAACTCAAAAAC
CTCCAACAACACAAATACGATTATGAATCAGTGATGCATTTCTCGAATAA
GACATTTTCATGGAATGGGAAAGAAACAATTGTAGCCGCCAAAAATGCTA
TTAATCCACCTGCCACTTTTGGTCAAAGGGATCACCTAACAGAATTGGAT
AAAGAAGAGTTACGAGCAGTCTACGGGAAAGGAGAGCAACTTCAAAAAGA
TGAGTGATATGACTTTGGTTAGCCAAAAATCGATAGGGATAATACAACAC
GAGATATTACACGCTTTGGGCTTCAATCATGAACAATCACGAACGGACAG
AGATAACTTTGTTGAAATTCAATGGGAAAATATCCAGGCTGTTTCTACAA
AAGAACCCGGAAGACCAGATGAAAATCTATTATGCAAACTTGTAACAGGT
GATGCAGACAATGGCACGGTGTGCAATGCTACAAACTTTAATACAACAAG
TATCAAACGAATATATGGCGACGGTAAGTTAATATTTACACATTTCATCA
TTCTACGCTACTGACTGCTCAGGCTCGCCTCCTCCATCAACAACAACCAC
GACGACAACAACAAAAAAACCACCAACGACTATAATAACTCAAAAACCTC
CAACAACACAAATACGATTATGAATCAGTGATGCATTTCTCGAATAAGAC
ATTTTCATGGAATGGGAAAGAAACAATTGTAGCCGCCAAAAATGCTATTA
ATCCACCTGCCACTTTTGGTCAAAGGGATCACCTAACAGAATTGGATAAA
GAAGAGTTACGAGCAGTCTACGGGAAAGGAGAGCAACTTCAAAAAGATGA
GTGATATGACTTTGGTTAGCCAAAAATCGATAGGGATAATACAACACGAG
ATATTACACGCTTTGGGCTTCAATCATGAACAATCACGAACGGACAGAGA
TAACTTTGTTGAAATTCAATGGGAAAATATCCAGGCTGTTTCTACAAAAG
AACCCGGAAGACCAGATGAAAATCTATTATGCAAACTTGTAACAGGTGAT
GCAGACAATGGCACGGTGTGCAATGCTACAAACTTTAATACAACAAGTAT
CAAACGAATATATGGCGACGGTAAGTTAATATTTACACATTTCATCATTC
TACGCTACTGACTGCTCAGGCTCGCCTCCTCCATCAACAACAACCACGAC
GACAACAACAAAAAAACCACCAACGACTATAATAACTCAAAAACCTCCAA
CAACACAAATACGATTATGAATCAGTGATGCATTTCTCGAATAAGACATT
TTCATGGAATGGGAAAGAAACAATTGTAGCCGCCAAAAATGCTATTAATC
CACCTGCCACTTTTGGTCAAAGGGATCACCTAACAGAATTGGATAAAGAA
GAGTTACGAGCAGTCTACGGGAAAGGAGAGCAACTTCAAAAAGATGAGTG
ATATGACTTTGGTTAGCCAAAAATCGATAGGGATAATACAACACGAGATA
TTACACGCTTTGGGCTTCAATCATGAACAATCACGAACGGACAGAGATAA
CTTTGTTGAAATTCAATGGGAAAATATCCAGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037449XLOC_037449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059487-exon-scaffold_328-1575043694:50829..50939TCONS_00059487-exon-scaffold_328-1575043694:50829..50939Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1575043694:48546..48601TCONS_00059487-exon-scaffold_328-1575043694:48546..48601Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1575043694:42930..43093TCONS_00059487-exon-scaffold_328-1575043694:42930..43093Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1575043694:40895..40989TCONS_00059487-exon-scaffold_328-1575043694:40895..40989Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1575043694:40431..40822TCONS_00059487-exon-scaffold_328-1575043694:40431..40822Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1510915933:50829..50939TCONS_00059487-exon-scaffold_328-1510915933:50829..50939Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1510915933:48546..48601TCONS_00059487-exon-scaffold_328-1510915933:48546..48601Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1510915933:42930..43093TCONS_00059487-exon-scaffold_328-1510915933:42930..43093Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1510915933:40895..40989TCONS_00059487-exon-scaffold_328-1510915933:40895..40989Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1510915933:40431..40822TCONS_00059487-exon-scaffold_328-1510915933:40431..40822Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1491911889:50829..50939TCONS_00059487-exon-scaffold_328-1491911889:50829..50939Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1491911889:48546..48601TCONS_00059487-exon-scaffold_328-1491911889:48546..48601Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1491911889:42930..43093TCONS_00059487-exon-scaffold_328-1491911889:42930..43093Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1491911889:40895..40989TCONS_00059487-exon-scaffold_328-1491911889:40895..40989Clytia hemisphaericaexon
TCONS_00059487-exon-scaffold_328-1491911889:40431..40822TCONS_00059487-exon-scaffold_328-1491911889:40431..40822Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059487-proteinTCONS_00059487-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_328supercontigscaffold_328:40431..50939 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.160964	0.12416	0	0	0	0	0	0	14.394	10.076	0	0	0.0874647	0.0448243	15.7079	29.7474	0	0	0	0	0.0625466	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR024079MetalloPept_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
Blast
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BLAST of TCONS_00059487 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 7.109e-22
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 3 
Query:    6 GIIQHEILHALGFNHEQSRTDRDNFVEIQWENIQAGKESNFKKMSDMTLVSQKSKYDYESVMHFSNKTFSWNGKETIVAAK----NAINPPATFGQRDHLTELDKEELRAVYGCS 338
             II+HEILHALGF HEQSRTDRD++V I W+ I +G + NF    D  +    + YDYES+MH+   +F+ N     + AK    N+I      GQR   + +D E L  +Y C+
Sbjct:  151 AIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSI-----IGQRLDFSAIDLERLNRMYNCT 260
The following BLAST results are available for this feature:
BLAST of TCONS_00059487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A7.109e-2242.61Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
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