TCONS_00059485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059485
Unique NameTCONS_00059485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059485 ID=TCONS_00059485|Name=TCONS_00059485|organism=Clytia hemisphaerica|type=transcript|length=392bp
CTTGAATGAATGGGTTCACGAAAGATGCCCTGTTACTTGTGGAAAATGCA
AAGGAGAGTACAATAGGACATCAAGCAAGGCACCTAGACCAACTATTCTT
GGAAGCGTAGACACTAAACTTTCgggcaaatttaaaaaaagtgctGCTAT
TAATTGTGGTAATGGGAATCCCCAACGCGTACTTGNGAAAGAAGTGTTTA
TCTTAATTGTGGTAATGTGAATCCCCAACGCGTACTTGATGTCTGGATGT
CTACTGAAAGAATATCATCGTCCGCGGGTGTTAACGATAAgttaactttc
aaaaaactccagaTGACACGTGGCAAATGTGGAGAACAGCAAGGACGTAA
ACGTTGAGAAAATCCTAACGAGAATGGACCGACCATTTAGGC
Run BLAST on NCBI

transcript from alignment at scaffold_328:33821..37756-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059485 ID=TCONS_00059485|Name=TCONS_00059485|organism=Clytia hemisphaerica|type=transcript|length=3936bp|location=Sequence derived from alignment at scaffold_328:33821..37756- (Clytia hemisphaerica)
CTTGAATGAATGGGTTCACGAAAGATGCCCTGTTACTTGTGGAAAATGCA
AAGGAGGTATACCCGCTTTTTATAAGAGTTATTACTCTCTGATGAAGCTG
GCCAAAAGTTAAGAACTAGCTCTGGTGGACGCAATTAAGCAATAATCTTT
ACGAAGTAGGAAAGGAATCGCATGAAAAAATCAAATTTTCGAATTTTTTA
ACATAACTCAATACTTTAAAAAATTCCTTATTTTTAGTAGGGGGAAACCC
TTATGATCCGCACCATCTTTCGTGGGACGCAACTACGTTTAATTGGTTTG
CAAATAGATGATAGTCTGTTCCAAACTCTTCTTCGCTGACTAAAAAGATG
AAAAAAATAACGCGAAGTTCGATTTGTTACTGATAGGAAACATTCCGTGT
TCCAGACATTTTTACGCAAATCTCTGAATGTCTCTGTGGTGGAGCGTAGC
TATTTTAAGCAATCTAATTCGACTAAAGTGACTTTACATTTAACGCATCA
ATGCAATGGTATCTGTCACTTATAAAAAGGGCACTCCTACGGTTTTGTTT
TCTTGGATTTTGTATCAGAAAACTGGGACAAACTAAGGCAGCCACATAAT
CTGCTCATTAAAAAAGGCACTCCTACAGAAAACTCCCAGAAAAGTGGGAC
AAACTGAGGCACAGAATCTGCTCGCTAACCAAAACAGACCGACATACGGT
AAGTTTTTTCAAAATACAAAAAAAACGCCCGTGAGTGGGTACAGCTAGAG
GCTAAAAATGATAGGATTTTGAAACTTTTTTGAGTGACCAAGCAAAAGTT
TTTTATGACCAAAAAACTCTCAACCCCCAAAAGGAGTAAACAATTTGACG
GTCTTCAAGGTCAAATTAAACTACCAGTAGCTTGCGCTATGAAAATTAAG
TAAAAATGATTGTTCTTATTGTATAGTACCCTGGGTATCAGAGGTTCAGT
TTTCAAAGAATATATTAACCTCTGGAGACCAATAATATATATTTTATCGC
GCATGTGCCAATCTAATCACTGTAGAAAAAATCAAAAATGAAGAGCAAAT
ATTCATATTAATGTCTACAGACTGTATCAGTATACAGTTTACTATTTACG
AATTCCCCAGAAACCTCTAAGTGTAATTGAAATCTTTTACACCATCCCCA
AATGTATAACAGTAATTACTAATTTTTTGATTAAAGAAATCTCACTTTAA
TTGAATCAAAATAATAGACAGACTTTATGTTATGATTCTCTATCACTGGG
CGCGTTCACACTGGAAAGTTTACTTAATTAAATCTATCAAAGTTAAACAA
AGAGATTTATGATGGATGAATACACTGGTTTATTACAGTTCTTTGTAGGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAGCTTACGACTCTTAATTAAGGAAGATCGATTAAAA
ATTACAATACTACGCGTTCGACTCTTTGTTAAATGCACGTTCTGTATTGT
AGTCAACAAAAGATTCTCCGAACTACATTTTTATTAAGGAAGGTCTGTAG
TGTGAACACGACCACTGACTCCTTTTACAAAGCATTGATGACTTTTTTTA
AGTTGTGTTTTCAAAGACGGGAATAAAAGTACCAACTTTGAATTTCATCC
AAGATCTTGGATGGTCGTCATTGTTACTTTTGTCTTCGTTGATTGCGCGC
TGAATAGAATCTCGATTCGTCGGCACAGCGTTAATATATGATTTTGACCT
GTGCTATTCATGGTACGTATATAGAGCATAAGATTCTAAGCAAATAAGTA
TATACAAAACTTATACTCAAACACACAAAAAAATAATTTCTGCGCAGTTT
TGTAATTGCACCCTTGCGCACTTTTGCAATTTTAGAAAAAAATCGTACAT
TTTTATCCAATACTTTTCTTTTCAGATTCGTCTTCTTTGTGATTGACCTT
ATTCGAGGATACTTAAAAAGCTTTTTAAAAAGCACTTTACTTTATTCTTA
GATGATTCATTGATCAAAGAACTATTATGCTGAAAAAGTCACAAAAAGCC
GAATTTACAATGAAGAGTTATTCCGAGTTGTTCCCATTTGTACCTAAACA
GATACGTTTTTGATATTTTTTGATTGGCTGTGCGCTTTTCATTAACTAAA
ATCAGCTCTATCATGAACCTTTGTTGCTTCATTAAAGAGTTATGCCGAAA
TATGTAATGCCTAGTTATAACTCTTTCAACTTTTAAATTCGAAATAACTT
AAGTGGTTACATAGTATGAATGTATTGTAAAATACATTCATTCATTCTCT
TGAAAAGAGTAGTGATACTGATTATGACGCAAAATGATTGAAATTAAGAG
TTGGATTTTTTATCTAATATCTCAAAGGAAAATTTGGACGATTTTTTGTC
AAAATTACAAAAGTGGGCAGAAAAATTACAAATCTGCGCAGAAATTATAA
AACTGCGCATAACACCATTCAAAGTTCAAAATCATGTGAAGTCTTTTCCA
GTTTAAGCTAAATTTAACGTCAATTATACTCTAACATAATTTTGAACTTT
GAAAGCCTATACTTTTTCTATATGTTTGAGTACAAGATTTGTTGTAAAGT
ATTTTTTTCTATATGTTCTATCCGATGGTACCAATCATTTGCGCTAAATC
AAATTTTAAAAAATCCTCATTTTTTTACGTATAATTTTAGGGGTTAGGAG
TTATGTCTAAAGAATCTGTTCTCAAAAAAGTTTCAAAATCCTATCTATTT
TCGAAACAATCACATGCGGTTACGTCCTACGAAAGAAGTTCATAAGGGTT
GGTTGAACCCCCTACTAACTTGGACGATATAAATTACGAGTAGAGTGACT
CTCTTATTGATCTCTTTGAAGTTGGTTAGTTGTTAAAAGTGAAAATCCAT
TATTTTCTTTAGAATTCTCATTGGAAACTATGGCACAAATAACAAAAATT
TACTTTCATGAAAAGGCTTCATCTTTATGTGGCGGCTCAAAATCACGGGA
ATATTTTTGCATACATACAGAGTACAATAGGACATCAAGCAAGGCACCTA
GACCAACTATTCTTGGAAGCGTAGACACTAAACTTTCGGGCAAATTTAAA
AAAAGTGCTGCTATTAATTGTGGTAATGGGAATCCCCAACGCGTACTTGN
GAAAGAAGTGTTTATCTTAATTGTGGTAATGTGAATCCCCAACGCGTACT
TGATGTAAGTGCTTCTTTCTTTGTACCAGATTGTTTTATAAAAGATAATA
TGATAATAACCTAAAAATAAATTCAAGAACAGCCCATTTTCCAGATTTTA
CAATCAGTAATAACTTATAGATTATAGTCCATTTTTAAGTCACAAATGAA
GAAAAACCCTCCAATGTCTTATCTTTATTTTCAGGTCTGGATGTCTACTG
AAAGAATATCATCGTCCGCGGGTGTTAACGATAAGTTAACTTTCAAAAAA
CTCCAGATGACACGTGGCAAATGTGGAGAACAGCAAGGACGTAAACGTTG
AGAAAATCCTAACGAGAATGGACCGACCATTTAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037448XLOC_037448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059485-exon-scaffold_328-1575043694:37701..37756TCONS_00059485-exon-scaffold_328-1575043694:37701..37756Clytia hemisphaericaexon
TCONS_00059485-exon-scaffold_328-1575043694:34153..34336TCONS_00059485-exon-scaffold_328-1575043694:34153..34336Clytia hemisphaericaexon
TCONS_00059485-exon-scaffold_328-1575043694:33821..33972TCONS_00059485-exon-scaffold_328-1575043694:33821..33972Clytia hemisphaericaexon
TCONS_00059485-exon-scaffold_328-1510915933:37701..37756TCONS_00059485-exon-scaffold_328-1510915933:37701..37756Clytia hemisphaericaexon
TCONS_00059485-exon-scaffold_328-1510915933:34153..34336TCONS_00059485-exon-scaffold_328-1510915933:34153..34336Clytia hemisphaericaexon
TCONS_00059485-exon-scaffold_328-1510915933:33821..33972TCONS_00059485-exon-scaffold_328-1510915933:33821..33972Clytia hemisphaericaexon
TCONS_00059485-exon-scaffold_328-1491911889:37701..37756TCONS_00059485-exon-scaffold_328-1491911889:37701..37756Clytia hemisphaericaexon
TCONS_00059485-exon-scaffold_328-1491911889:34153..34336TCONS_00059485-exon-scaffold_328-1491911889:34153..34336Clytia hemisphaericaexon
TCONS_00059485-exon-scaffold_328-1491911889:33821..33972TCONS_00059485-exon-scaffold_328-1491911889:33821..33972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_328supercontigscaffold_328:33821..37756 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.13729	2.37328	1.99398	2.10008	0.180204	0.441428	0.249842	0.815785	7.2603	1.14039	0	0	0	0	20.8096	48.2947	0	0.274283	0	0	0.175246	0.234635	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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