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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059480 ID=TCONS_00059480|Name=TCONS_00059480|organism=Clytia hemisphaerica|type=transcript|length=1249bp
TTCTCCATCTGAATTGCGTCAAATAAGGTTGTTGGGAATAATATTTCCCA
AACTTGATGTAGTTTTCATAATAGCTATGTACAAACTCAATGAAAAGGAC
TTCAAAAAGACAATTCGATTTTGCAATTTTGGAAGTCTCAGGAATCTTAG
ATCTCTAAGCTACAGGAATCTTGAATCCAAATATAGAATGGCATGTATCC
ATGGAAATTCTGCTCTTCGAGAATACCAAAATGTTCAACACAACACTACC
GAATGGACCAAATGTGTAACCTCACCAAAACTTCAAGATCCAACACTTTC
TACGGGTGAATTTTTGTTGGGAGTAGCATTTCCCAAACTTGATTTCGTTT
TCATAAAGGCAATGTACAAACTCAATGGAAAGGACTTGAAAAAGACGATA
CAGTTTTGCAGTTTTGGAAGTCTCAGGAATCTTGAATCAAAATCAAAATC
TAGAAACTGCTCATCAACGTGTGTAAAAATTTGACCTCGATTAGTGTTTA
TGGTTCAACTTGGATTCAATCTAAGCTACCACGGCGTTATCAATCAATCA
TATTTATGATTTATTAGCGCGAGACGTGTGATGTCACAGTTTCATAATGG
CTGATAATGAGATTAGAATTATGTAGCAGAGAAAGAAATATGCGGGCAAA
ATGGAACAGCCAACATTTTGGTTTCTGCTGAGAGACATAGCCTTCAACAG
CTAACTTCCTTCTTGACGGTGGTGCATAGAGCAATAACTAAAGATTCTAG
CTTTTTACTTTCGCCAATTTAAGCCTTTGTTGCGCGAACTAAGGCAAAAA
CTGTGATATTTTGCTACTTTTTTACTTTTTCTTTTAATTTCTCTCTATCT
AGTATTAGGGAGGTTGGGCCTTACGCGTGCGGCAGTAACAAAACATAGAT
TTTCGAAAAAAAATATTCAAGCTTACATATCTCAGGAAGGAAACCTCTTA
ACATAAGTATTTTTTCCAAAGTGTAGAGAATTTATTCAGCTTTCAGAGAA
TCGTGCAGCGTTTTTGTTTTCCGTGATTAGCGTATTATAATATTGGAAGA
CACTACCTTAATCGTACTAATTTTCGCGGGAACTAATTTGCGCGGTTTTG
GCCATTTTTAGACAAATTTCTTTCATTTTCCTAGGGCTGAAAAGGTGTCG
AAAACTGTTTGCCGAAGTAGAACCAGAAATGTTTCGGAAATCGTCCTTTT
TTCACATTTCCGTCACATTATTTCAACTTATTTAATTGTTTCTTTTCCA Run BLAST on NCBI protein sequence of TCONS_00059480-protein >TCONS_00059480-protein ID=TCONS_00059480-protein|Name=TCONS_00059480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
SPSELRQIRLLGIIFPKLDVVFIIAMYKLNEKDFKKTIRFCNFGSLRNLR
SLSYRNLESKYRMACIHGNSALREYQNVQHNTTEWTKCVTSPKLQDPTLS
TGEFLLGVAFPKLDFVFIKAMYKLNGKDLKKTIQFCSFGSLRNLESKSKS
RNCSSTCVKI Run BLAST on NCBI transcript from alignment at scaffold_327:493833..495081 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059480 ID=TCONS_00059480|Name=TCONS_00059480|organism=Clytia hemisphaerica|type=transcript|length=1249bp|location=Sequence derived from alignment at scaffold_327:493833..495081 (Clytia hemisphaerica)
TGGAAAAGAAACAATTAAATAAGTTGAAATAATGTGACGGAAATGTGAAA
AAAGGACGATTTCCGAAACATTTCTGGTTCTACTTCGGCAAACAGTTTTC
GACACCTTTTCAGCCCTAGGAAAATGAAAGAAATTTGTCTAAAAATGGCC
AAAACCGCGCAAATTAGTTCCCGCGAAAATTAGTACGATTAAGGTAGTGT
CTTCCAATATTATAATACGCTAATCACGGAAAACAAAAACGCTGCACGAT
TCTCTGAAAGCTGAATAAATTCTCTACACTTTGGAAAAAATACTTATGTT
AAGAGGTTTCCTTCCTGAGATATGTAAGCTTGAATATTTTTTTTCGAAAA
TCTATGTTTTGTTACTGCCGCACGCGTAAGGCCCAACCTCCCTAATACTA
GATAGAGAGAAATTAAAAGAAAAAGTAAAAAAGTAGCAAAATATCACAGT
TTTTGCCTTAGTTCGCGCAACAAAGGCTTAAATTGGCGAAAGTAAAAAGC
TAGAATCTTTAGTTATTGCTCTATGCACCACCGTCAAGAAGGAAGTTAGC
TGTTGAAGGCTATGTCTCTCAGCAGAAACCAAAATGTTGGCTGTTCCATT
TTGCCCGCATATTTCTTTCTCTGCTACATAATTCTAATCTCATTATCAGC
CATTATGAAACTGTGACATCACACGTCTCGCGCTAATAAATCATAAATAT
GATTGATTGATAACGCCGTGGTAGCTTAGATTGAATCCAAGTTGAACCAT
AAACACTAATCGAGGTCAAATTTTTACACACGTTGATGAGCAGTTTCTAG
ATTTTGATTTTGATTCAAGATTCCTGAGACTTCCAAAACTGCAAAACTGT
ATCGTCTTTTTCAAGTCCTTTCCATTGAGTTTGTACATTGCCTTTATGAA
AACGAAATCAAGTTTGGGAAATGCTACTCCCAACAAAAATTCACCCGTAG
AAAGTGTTGGATCTTGAAGTTTTGGTGAGGTTACACATTTGGTCCATTCG
GTAGTGTTGTGTTGAACATTTTGGTATTCTCGAAGAGCAGAATTTCCATG
GATACATGCCATTCTATATTTGGATTCAAGATTCCTGTAGCTTAGAGATC
TAAGATTCCTGAGACTTCCAAAATTGCAAAATCGAATTGTCTTTTTGAAG
TCCTTTTCATTGAGTTTGTACATAGCTATTATGAAAACTACATCAAGTTT
GGGAAATATTATTCCCAACAACCTTATTTGACGCAATTCAGATGGAGAA Coding sequence (CDS) from alignment at scaffold_327:493833..495081 >TCONS_00059480 ID=TCONS_00059480|Name=TCONS_00059480|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_327:493833..495081 (Clytia hemisphaerica)
TCAAATTTTTACACACGTTGATGAGCAGTTTCTAGATTTTGATTTTGATT
CAAGATTCCTGAGACTTCCAAAACTGCAAAACTGTATCGTCTTTTTCAAG
TCCTTTCCATTGAGTTTGTACATTGCCTTTATGAAAACGAAATCAAGTTT
GGGAAATGCTACTCCCAACAAAAATTCACCCGTAGAAAGTGTTGGATCTT
GAAGTTTTGGTGAGGTTACACATTTGGTCCATTCGGTAGTGTTGTGTTGA
ACATTTTGGTATTCTCGAAGAGCAGAATTTCCATGGATACATGCCATTCT
ATATTTGGATTCAAGATTCCTGTAGCTTAGAGATCTAAGATTCCTGAGAC
TTCCAAAATTGCAAAATCGAATTGTCTTTTTGAAGTCCTTTTCATTGAGT
TTGTACATAGCTATTATGAAAACTACATCAAGTTTGGGAAATATTATTCC
CAACAACCTTATTTGACGCAATTCAGATGGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059480-exon-scaffold_327-1491911889:493833..495081 | TCONS_00059480-exon-scaffold_327-1491911889:493833..495081 | Clytia hemisphaerica | exon |
| TCONS_00059480-exon-scaffold_327-1510915933:493833..495081 | TCONS_00059480-exon-scaffold_327-1510915933:493833..495081 | Clytia hemisphaerica | exon |
| TCONS_00059480-exon-scaffold_327-1575043694:493833..495081 | TCONS_00059480-exon-scaffold_327-1575043694:493833..495081 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:493833..495081 . |
Blast
The following BLAST results are available for this feature:
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