TCONS_00059473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059473
Unique NameTCONS_00059473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059473 ID=TCONS_00059473|Name=TCONS_00059473|organism=Clytia hemisphaerica|type=transcript|length=290bp
CTCAGTCAGAGTTAAACAATGGATTTCTCATCACGTGACAGAAACAGAAG
tcaccatcatcatcatcatcggaAGCCACTTTTCACTTACGATAAAGAAG
GAGTCAAGAGATACAAGAAGTGGCTTGCTGATGGTAGaaatcaagataaa
aacaaaggacaTAATATTATCATCAGTGTTGAGGAGTCTGGTAACGAATC
TTCTGAAAGGGTAGGTGAGAAACAATCATACTACTCTAAAGTTGAATGTC
GAAAAAGTAGTCATGATATGCATGGAGGTAAAGTTGACAA
Run BLAST on NCBI

transcript from alignment at scaffold_327:315953..316242

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059473 ID=TCONS_00059473|Name=TCONS_00059473|organism=Clytia hemisphaerica|type=transcript|length=290bp|location=Sequence derived from alignment at scaffold_327:315953..316242 (Clytia hemisphaerica)
TTGTCAACTTTACCTCCATGCATATCATGACTACTTTTTCGACATTCAAC
TTTAGAGTAGTATGATTGTTTCTCACCTACCCTTTCAGAAGATTCGTTAC
CAGACTCCTCAACACTGATGATAATATTAtgtcctttgtttttatcttga
tttCTACCATCAGCAAGCCACTTCTTGTATCTCTTGACTCCTTCTTTATC
GTAAGTGAAAAGTGGCTtccgatgatgatgatgatggtgaCTTCTGTTTC
TGTCACGTGATGAGAAATCCATTGTTTAACTCTGACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037436XLOC_037436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059473-exon-scaffold_327-1491911889:315953..316242TCONS_00059473-exon-scaffold_327-1491911889:315953..316242Clytia hemisphaericaexon
TCONS_00059473-exon-scaffold_327-1510915933:315953..316242TCONS_00059473-exon-scaffold_327-1510915933:315953..316242Clytia hemisphaericaexon
TCONS_00059473-exon-scaffold_327-1575043694:315953..316242TCONS_00059473-exon-scaffold_327-1575043694:315953..316242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:315953..316242 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48984	5.53011	2.46961	3.8658	0.588281	0	0	0	0	0.455335	0	0	0	0	0	0	0	0	0	0	0	0	5.00173	4.5473	0	0	1.19632	0.63837	4.35763	4.43974
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top