TCONS_00059472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059472
Unique NameTCONS_00059472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059472 ID=TCONS_00059472|Name=TCONS_00059472|organism=Clytia hemisphaerica|type=transcript|length=735bp
TAACAGTAGTATTGAGAATAAAGATATGATCATCAACAAATCTCCAATAG
TCTGTCAAAGGAAACACAATGAGTATATTATTGAATCTACTGCACCAGAG
CCTGTTGAACCATCTTCTGAAATCGTAAAACGCAATTTATTGGGAAATGG
ATGTTTCTCTGAAACGGATAGTGAGGATGAAATACGTCGCTTAAACTTTG
AAATCAAAACTGAATCGTTTTCAGAAGATCAGCACCTTTCTGTTACCAAT
ATTGTTAATGAACCAGATTATGAAAAGGTGATTGAATATGAACATGCTAA
AGGTATAAAGACTAAGCTCAAGAAGGAAGATAAATCGACCATGGAAAATG
ATGAAAGTTCTTGCAATGAGTTTTTTGCACcaataaatcagaaaaaagat
TTAAGTTCAGATGGCTCTTCTCTTAAACCGATAAAACATGCATGCATTAC
ATCTATCAACTCTGATCATCAGGTACAAATAATCGACTTGACGAATGAAA
CAAACTATTACTCATCATTATCAAACAATCCAANTCGACTTGACGAATGA
AACAAATTATTCCTCATCATTATCAAACAATCCAAAGAAATGCTCAAATT
CTGAGGATGCAACAATgatttcatccaatcagaaaggTGTTTACAGGAAA
TTAAATTTCAGTGGACCGATACTCACGAAGAACTGCCACCAGATTGCCGA
GCAAATAGATAGTATTGACAAAATCGACACCCAGA
Run BLAST on NCBI

protein sequence of TCONS_00059472-protein

>TCONS_00059472-protein ID=TCONS_00059472-protein|Name=TCONS_00059472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
NSSIENKDMIINKSPIVCQRKHNEYIIESTAPEPVEPSSEIVKRNLLGNG
CFSETDSEDEIRRLNFEIKTESFSEDQHLSVTNIVNEPDYEKVIEYEHAK
GIKTKLKKEDKSTMENDESSCNEFFAPINQKKDLSSDGSSLKPIKHACIT
SINSDHQVQIIDLTNETNYYSSLSNNPXRLDE
Run BLAST on NCBI

transcript from alignment at scaffold_327:315110..315844

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059472 ID=TCONS_00059472|Name=TCONS_00059472|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at scaffold_327:315110..315844 (Clytia hemisphaerica)
TCTGGGTGTCGATTTTGTCAATACTATCTATTTGCTCGGCAATCTGGTGG
CAGTTCTTCGTGAGTATCGGTCCACTGAAATTTAATTTCCTGTAAACAcc
tttctgattggatgaaatcATTGTTGCATCCTCAGAATTTGAGCATTTCT
TTGGATTGTTTGATAATGATGAGGAATAATTTGTTTCATTCGTCAAGTCG
ANTTGGATTGTTTGATAATGATGAGTAATAGTTTGTTTCATTCGTCAAGT
CGATTATTTGTACCTGATGATCAGAGTTGATAGATGTAATGCATGCATGT
TTTATCGGTTTAAGAGAAGAGCCATCTGAACTTAAatcttttttctgatt
tattgGTGCAAAAAACTCATTGCAAGAACTTTCATCATTTTCCATGGTCG
ATTTATCTTCCTTCTTGAGCTTAGTCTTTATACCTTTAGCATGTTCATAT
TCAATCACCTTTTCATAATCTGGTTCATTAACAATATTGGTAACAGAAAG
GTGCTGATCTTCTGAAAACGATTCAGTTTTGATTTCAAAGTTTAAGCGAC
GTATTTCATCCTCACTATCCGTTTCAGAGAAACATCCATTTCCCAATAAA
TTGCGTTTTACGATTTCAGAAGATGGTTCAACAGGCTCTGGTGCAGTAGA
TTCAATAATATACTCATTGTGTTTCCTTTGACAGACTATTGGAGATTTGT
TGATGATCATATCTTTATTCTCAATACTACTGTTA

Coding sequence (CDS) from alignment at scaffold_327:315110..315844

>TCONS_00059472 ID=TCONS_00059472|Name=TCONS_00059472|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_327:315110..315844 (Clytia hemisphaerica)
TCATTCGTCAAGTCGANTTGGATTGTTTGATAATGATGAGTAATAGTTTG
TTTCATTCGTCAAGTCGATTATTTGTACCTGATGATCAGAGTTGATAGAT
GTAATGCATGCATGTTTTATCGGTTTAAGAGAAGAGCCATCTGAACTTAA
atcttttttctgatttattgGTGCAAAAAACTCATTGCAAGAACTTTCAT
CATTTTCCATGGTCGATTTATCTTCCTTCTTGAGCTTAGTCTTTATACCT
TTAGCATGTTCATATTCAATCACCTTTTCATAATCTGGTTCATTAACAAT
ATTGGTAACAGAAAGGTGCTGATCTTCTGAAAACGATTCAGTTTTGATTT
CAAAGTTTAAGCGACGTATTTCATCCTCACTATCCGTTTCAGAGAAACAT
CCATTTCCCAATAAATTGCGTTTTACGATTTCAGAAGATGGTTCAACAGG
CTCTGGTGCAGTAGATTCAATAATATACTCATTGTGTTTCCTTTGACAGA
CTATTGGAGATTTGTTGATGATCATATCTTTATTCTCAATACTACTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037435XLOC_037435Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059472-proteinTCONS_00059472-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059472-exon-scaffold_327-1491911889:315110..315844TCONS_00059472-exon-scaffold_327-1491911889:315110..315844Clytia hemisphaericaexon
TCONS_00059472-exon-scaffold_327-1510915933:315110..315844TCONS_00059472-exon-scaffold_327-1510915933:315110..315844Clytia hemisphaericaexon
TCONS_00059472-exon-scaffold_327-1575043694:315110..315844TCONS_00059472-exon-scaffold_327-1575043694:315110..315844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:315110..315844 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.17006	3.09131	2.21468	0.971288	0	0.143752	0	0.0811818	0.0568373	0	0	0	0	0	0	0.041101	0	0	0	0	0	0	3.09339	2.95296	0	0.129259	0.277455	0.0987023	3.9677	2.97464
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top