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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059470 ID=TCONS_00059470|Name=TCONS_00059470|organism=Clytia hemisphaerica|type=transcript|length=938bp
CAACCACCAACAGAACCAGTGCCTCTTAATGAACTTTCTGAtgatattct
tcaaaatgaaataatgcTTTTTAGAAACCACCCTAGTAtactcaaaataa
aagaaaaggtatcaaacaatgaaaactcCTTCAAGTTCAGAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNggtatcaaacaatgaaaactcCT
TCAAGTTTAGAAACACCACCGAAGACGAAGTAGAGAAGATAATTAGTAAC
CTTAAGACAAATAAGTCTCAAGCGGAAAATTATATACcagcgaaaataat
taaaaaatactcaCTTATTTGCAAGCTGCTTCTCTATAAGCATAAATGAC
TCCTTCAGCTCAGGTATTTTCCCAACATTTCCAAGTTCGCGACAGTCACC
CCAGTCTacaagaaaaattctaaaaacgataaAAGTAACTATAGACCAAT
AAGTATTCTGCCGGTAATAtccaaaatttacgaaagagTATATCACAATC
AAATATCAGAATACTTTGAGCACTACTTTGATGAACAACAATGTGGTTTC
AGGAAAGGATATTCCACTCAAACCTCTCTTCTCCCAATGGAAGAGCTCTG
GAAGCTAGCCAATGacaaaaaatatgtttttgggGCACTGCTCATCGACC
TTTCTAAGGCCTTTGACTGCATGTGCCACAAATTACTTGtagcaaagatc
agtgcatacGGGTTCGATAACCTTTCCACTGGGTTAGTCACGAGTTATCT
AGAAAATAGGCAACAAAGGACAAAAGTAGGCAACGAACTGAGTAACTGGA
TCAAGATCAAGGATGGTGTTCCCCAGGGATCAATCCTTGGTCCtctgttt
ttcaatatttatatctgtgacctctttttcatcattgaggATACTAAGGT
TGCGAATTATGCGGACGATACGACACCCTATGTTAGTN Run BLAST on NCBI protein sequence of TCONS_00059470-protein >TCONS_00059470-protein ID=TCONS_00059470-protein|Name=TCONS_00059470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MEELWKLANDKKYVFGALLIDLSKAFDCMCHKLLVAKISAYGFDNLSTGL
VTSYLENRQQRTKVGNELSNWIKIKDGVPQGSILGPLFFNIYICDLFFII
EDTKVANYADDTTPYVS Run BLAST on NCBI transcript from alignment at scaffold_327:278332..279269 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059470 ID=TCONS_00059470|Name=TCONS_00059470|organism=Clytia hemisphaerica|type=transcript|length=938bp|location=Sequence derived from alignment at scaffold_327:278332..279269 (Clytia hemisphaerica)
NACTAACATAGGGTGTCGTATCGTCCGCATAATTCGCAACCTTAGTATcc
tcaatgatgaaaaagaggtcacagatataaatattgaaaaacagaGGACC
AAGGATTGATCCCTGGGGAACACCATCCTTGATCTTGATCCAGTTACTCA
GTTCGTTGCCTACTTTTGTCCTTTGTTGCCTATTTTCTAGATAACTCGTG
ACTAACCCAGTGGAAAGGTTATCGAACCCgtatgcactgatctttgctaC
AAGTAATTTGTGGCACATGCAGTCAAAGGCCTTAGAAAGGTCGATGAGCA
GTGCcccaaaaacatattttttgtCATTGGCTAGCTTCCAGAGCTCTTCC
ATTGGGAGAAGAGAGGTTTGAGTGGAATATCCTTTCCTGAAACCACATTG
TTGTTCATCAAAGTAGTGCTCAAAGTATTCTGATATTTGATTGTGATATA
ctctttcgtaaattttggaTATTACCGGCAGAATACTTATTGGTCTATAG
TTACTTttatcgtttttagaatttttcttgtAGACTGGGGTGACTGTCGC
GAACTTGGAAATGTTGGGAAAATACCTGAGCTGAAGGAGTCATTTATGCT
TATAGAGAAGCAGCTTGCAAATAAGtgagtattttttaattattttcgct
gGTATATAATTTTCCGCTTGAGACTTATTTGTCTTAAGGTTACTAATTAT
CTTCTCTACTTCGTCTTCGGTGGTGTTTCTAAACTTGAAGgagttttcat
tgtttgataccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCT
GAACTTGAAGgagttttcattgtttgataccttttcttttattttgagta
TACTAGGGTGGTTTCTAAAAAgcattatttcattttgaagaatatcaTCA
GAAAGTTCATTAAGAGGCACTGGTTCTGTTGGTGGTTG Coding sequence (CDS) from alignment at scaffold_327:278332..279269 >TCONS_00059470 ID=TCONS_00059470|Name=TCONS_00059470|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_327:278332..279269 (Clytia hemisphaerica)
ACTAACATAGGGTGTCGTATCGTCCGCATAATTCGCAACCTTAGTATcct
caatgatgaaaaagaggtcacagatataaatattgaaaaacagaGGACCA
AGGATTGATCCCTGGGGAACACCATCCTTGATCTTGATCCAGTTACTCAG
TTCGTTGCCTACTTTTGTCCTTTGTTGCCTATTTTCTAGATAACTCGTGA
CTAACCCAGTGGAAAGGTTATCGAACCCgtatgcactgatctttgctaCA
AGTAATTTGTGGCACATGCAGTCAAAGGCCTTAGAAAGGTCGATGAGCAG
TGCcccaaaaacatattttttgtCATTGGCTAGCTTCCAGAGCTCTTCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059470-exon-scaffold_327-1491911889:278332..279269 | TCONS_00059470-exon-scaffold_327-1491911889:278332..279269 | Clytia hemisphaerica | exon |
| TCONS_00059470-exon-scaffold_327-1510915933:278332..279269 | TCONS_00059470-exon-scaffold_327-1510915933:278332..279269 | Clytia hemisphaerica | exon |
| TCONS_00059470-exon-scaffold_327-1575043694:278332..279269 | TCONS_00059470-exon-scaffold_327-1575043694:278332..279269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:278332..279269 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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