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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059462 ID=TCONS_00059462|Name=TCONS_00059462|organism=Clytia hemisphaerica|type=transcript|length=1977bp
ACTAACAAAAAAGGATGTGGGACAAACTACGGACGAATTCAACCCAGTCC
AATATGAAGGAAATACCATCTCCGGCTTAATAGATGGACAGATAAAAACA
GATCTGAAAACATACGAGCTAGAGAAAGAACAACAAACACTAAGAAAAAA
CTGGGCAGAAGCAGCCAAAAGAATCAATAATATTGAAGAAAACGAAGCAA
TCTTAACCCAGGACTATAACAACCTGACCAAATCTGAAAACGAACTCAGA
CAGAACCAACAACAGGCAAACAAATACTTGGACGACCTCCAGGATGACTA
CCAGAATATTCTAAACAAAGTAGCAAACCTGACCACCAGACAGGACTACT
GGAAAACAAGagaattaaaaatgaaagaaaaactagGACAAGTCCAAAAC
GAAACAAAACAACTGAAAGAGCAAAACCAGGAGATAATTGATCAGGAAAA
GATCCTGACGAAAACCTTAAACAACGTAACCAAAGAACTGAATCTggaaa
agaataaaagaaaaagagatgaaaagaaaatccaagaGTTAGAAAAAAAC
CAAACTAAAATCCAAAATGAACAAGAACTccttaaacaaaaagaaaaaac
caTGGACGTAAGAATTGATGCAAACACGCATTCCATCACAAGACTGAACA
TAACCCAAAACCAAATAAAGAAAAGACTGAATagtgatgaaaataaaatc
aaccagaattcaCAAGATATCAAGGTCATTAAACATGACGTAAAACATCT
GGACCACAAAATAAACACAGAAATCAAGGACCGAAAACAAGCAATCAATG
ATGTAAGAAACGACATAAAAGACGGATCCTTAAAACCAGAAAAGAACACT
GAAAAAGACGAATGTGCCTGGTACGACTCCCTAAGCTGCTTCTGGAAAAC
AGCAGAGGCTGTGCTAACTACCATCGCTATAATAGGAGGAACAGTGCTGG
CAATATACATATTCGGACCAAGAATACTAAGCTGCCTAACAAGAACGATC
AGTAGAAACGCCGACGCAAAGTACCAGAATCGATATTATCAAAGACAACT
AGTAAAAGGAAAGTTAATGTCGCTCCAAAAATCAAATCCCCAAATGCCAT
ATACTAGGGAAGCGATATTAGACGAAATCATCGAAAAGCACTTGGTTAGA
CATCACGACAAAATGAAAGTCGAAGTGATAGAAACCCAAATGTCATACTG
CACTCGAAAAGAAGGTGATTGGAAAGGAAAAGCCTTCCACCACTTCCTTA
AAATGATGCTAAAAAAGGTAAAGAGCCTTCAGCCTTTTAAAATCACAGGA
AAAGATTTAATTTGGACTGACGAATGGCCACGAAAGCCTAACGCCACACT
GACGTTACCTACCGTAAAAGAAAAAGGAGTGATCCCAAAAGAACACTTTG
ACACAGCAGAAAGAATTCGAGCATTTCCAATCAGAAAAGGAATAATATTA
TTCAGAATCTACTTCAATGAAAACCaaactttcaagaaaattgTAATCCT
TACCAGCAACCAAATGCAATACGAGTTCACTCACTATCTACCACTAAACA
TAATTCACACAATCCTGAACAGATCGCCCAATTATTATGACGAAAAACAA
AACACTATCACCTACTTGGGACCTAACAACAGTAACAACCTGGAACgaac
tttcacaaaaaaaggAGAATTCCTGTCAGAGTGGACAGAAACTGCCTTCA
ACCTTACACATCCCAACGCCTCTAAAGGAACCCTATCCTTCCACAGAGAA
AGGAATAGTAAACTCCAACAAATATTTTGTGAAGCACCCACCTGCAGTCT
CATAAGAAATCTCATCCCCTCTATTCCAGACGGAATCTTTACCGATTCAC
TCTTGAGAATAAATCCAAAAATCTATTTGGGAGAAGAAGGAAAAGGAATG
TTCAAAGGAGCCAGTGGAGATGATGGTTATCTAGAAGACACCACATATCT
TTATCGCTGTCGAGGAGAAGAAGATAG Run BLAST on NCBI protein sequence of TCONS_00059462-protein >TCONS_00059462-protein ID=TCONS_00059462-protein|Name=TCONS_00059462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=658bp
LTKKDVGQTTDEFNPVQYEGNTISGLIDGQIKTDLKTYELEKEQQTLRKN
WAEAAKRINNIEENEAILTQDYNNLTKSENELRQNQQQANKYLDDLQDDY
QNILNKVANLTTRQDYWKTRELKMKEKLGQVQNETKQLKEQNQEIIDQEK
ILTKTLNNVTKELNLEKNKRKRDEKKIQELEKNQTKIQNEQELLKQKEKT
MDVRIDANTHSITRLNITQNQIKKRLNSDENKINQNSQDIKVIKHDVKHL
DHKINTEIKDRKQAINDVRNDIKDGSLKPEKNTEKDECAWYDSLSCFWKT
AEAVLTTIAIIGGTVLAIYIFGPRILSCLTRTISRNADAKYQNRYYQRQL
VKGKLMSLQKSNPQMPYTREAILDEIIEKHLVRHHDKMKVEVIETQMSYC
TRKEGDWKGKAFHHFLKMMLKKVKSLQPFKITGKDLIWTDEWPRKPNATL
TLPTVKEKGVIPKEHFDTAERIRAFPIRKGIILFRIYFNENQTFKKIVIL
TSNQMQYEFTHYLPLNIIHTILNRSPNYYDEKQNTITYLGPNNSNNLERT
FTKKGEFLSEWTETAFNLTHPNASKGTLSFHRERNSKLQQIFCEAPTCSL
IRNLIPSIPDGIFTDSLLRINPKIYLGEEGKGMFKGASGDDGYLEDTTYL
YRCRGEED Run BLAST on NCBI transcript from alignment at scaffold_327:204732..206708 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059462 ID=TCONS_00059462|Name=TCONS_00059462|organism=Clytia hemisphaerica|type=transcript|length=1977bp|location=Sequence derived from alignment at scaffold_327:204732..206708 (Clytia hemisphaerica)
CTATCTTCTTCTCCTCGACAGCGATAAAGATATGTGGTGTCTTCTAGATA
ACCATCATCTCCACTGGCTCCTTTGAACATTCCTTTTCCTTCTTCTCCCA
AATAGATTTTTGGATTTATTCTCAAGAGTGAATCGGTAAAGATTCCGTCT
GGAATAGAGGGGATGAGATTTCTTATGAGACTGCAGGTGGGTGCTTCACA
AAATATTTGTTGGAGTTTACTATTCCTTTCTCTGTGGAAGGATAGGGTTC
CTTTAGAGGCGTTGGGATGTGTAAGGTTGAAGGCAGTTTCTGTCCACTCT
GACAGGAATTCTcctttttttgtgaaagttcGTTCCAGGTTGTTACTGTT
GTTAGGTCCCAAGTAGGTGATAGTGTTTTGTTTTTCGTCATAATAATTGG
GCGATCTGTTCAGGATTGTGTGAATTATGTTTAGTGGTAGATAGTGAGTG
AACTCGTATTGCATTTGGTTGCTGGTAAGGATTAcaattttcttgaaagt
ttGGTTTTCATTGAAGTAGATTCTGAATAATATTATTCCTTTTCTGATTG
GAAATGCTCGAATTCTTTCTGCTGTGTCAAAGTGTTCTTTTGGGATCACT
CCTTTTTCTTTTACGGTAGGTAACGTCAGTGTGGCGTTAGGCTTTCGTGG
CCATTCGTCAGTCCAAATTAAATCTTTTCCTGTGATTTTAAAAGGCTGAA
GGCTCTTTACCTTTTTTAGCATCATTTTAAGGAAGTGGTGGAAGGCTTTT
CCTTTCCAATCACCTTCTTTTCGAGTGCAGTATGACATTTGGGTTTCTAT
CACTTCGACTTTCATTTTGTCGTGATGTCTAACCAAGTGCTTTTCGATGA
TTTCGTCTAATATCGCTTCCCTAGTATATGGCATTTGGGGATTTGATTTT
TGGAGCGACATTAACTTTCCTTTTACTAGTTGTCTTTGATAATATCGATT
CTGGTACTTTGCGTCGGCGTTTCTACTGATCGTTCTTGTTAGGCAGCTTA
GTATTCTTGGTCCGAATATGTATATTGCCAGCACTGTTCCTCCTATTATA
GCGATGGTAGTTAGCACAGCCTCTGCTGTTTTCCAGAAGCAGCTTAGGGA
GTCGTACCAGGCACATTCGTCTTTTTCAGTGTTCTTTTCTGGTTTTAAGG
ATCCGTCTTTTATGTCGTTTCTTACATCATTGATTGCTTGTTTTCGGTCC
TTGATTTCTGTGTTTATTTTGTGGTCCAGATGTTTTACGTCATGTTTAAT
GACCTTGATATCTTGtgaattctggttgattttattttcatcactATTCA
GTCTTTTCTTTATTTGGTTTTGGGTTATGTTCAGTCTTGTGATGGAATGC
GTGTTTGCATCAATTCTTACGTCCAtggttttttctttttgtttaaggAG
TTCTTGTTCATTTTGGATTTTAGTTTGGTTTTTTTCTAACtcttggattt
tcttttcatctctttttcttttattcttttccAGATTCAGTTCTTTGGTT
ACGTTGTTTAAGGTTTTCGTCAGGATCTTTTCCTGATCAATTATCTCCTG
GTTTTGCTCTTTCAGTTGTTTTGTTTCGTTTTGGACTTGTCctagttttt
ctttcatttttaattctCTTGTTTTCCAGTAGTCCTGTCTGGTGGTCAGG
TTTGCTACTTTGTTTAGAATATTCTGGTAGTCATCCTGGAGGTCGTCCAA
GTATTTGTTTGCCTGTTGTTGGTTCTGTCTGAGTTCGTTTTCAGATTTGG
TCAGGTTGTTATAGTCCTGGGTTAAGATTGCTTCGTTTTCTTCAATATTA
TTGATTCTTTTGGCTGCTTCTGCCCAGTTTTTTCTTAGTGTTTGTTGTTC
TTTCTCTAGCTCGTATGTTTTCAGATCTGTTTTTATCTGTCCATCTATTA
AGCCGGAGATGGTATTTCCTTCATATTGGACTGGGTTGAATTCGTCCGTA
GTTTGTCCCACATCCTTTTTTGTTAGT Coding sequence (CDS) from alignment at scaffold_327:204732..206708 >TCONS_00059462 ID=TCONS_00059462|Name=TCONS_00059462|organism=Clytia hemisphaerica|type=CDS|length=1974bp|location=Sequence derived from alignment at scaffold_327:204732..206708 (Clytia hemisphaerica)
ATCTTCTTCTCCTCGACAGCGATAAAGATATGTGGTGTCTTCTAGATAAC
CATCATCTCCACTGGCTCCTTTGAACATTCCTTTTCCTTCTTCTCCCAAA
TAGATTTTTGGATTTATTCTCAAGAGTGAATCGGTAAAGATTCCGTCTGG
AATAGAGGGGATGAGATTTCTTATGAGACTGCAGGTGGGTGCTTCACAAA
ATATTTGTTGGAGTTTACTATTCCTTTCTCTGTGGAAGGATAGGGTTCCT
TTAGAGGCGTTGGGATGTGTAAGGTTGAAGGCAGTTTCTGTCCACTCTGA
CAGGAATTCTcctttttttgtgaaagttcGTTCCAGGTTGTTACTGTTGT
TAGGTCCCAAGTAGGTGATAGTGTTTTGTTTTTCGTCATAATAATTGGGC
GATCTGTTCAGGATTGTGTGAATTATGTTTAGTGGTAGATAGTGAGTGAA
CTCGTATTGCATTTGGTTGCTGGTAAGGATTAcaattttcttgaaagttt
GGTTTTCATTGAAGTAGATTCTGAATAATATTATTCCTTTTCTGATTGGA
AATGCTCGAATTCTTTCTGCTGTGTCAAAGTGTTCTTTTGGGATCACTCC
TTTTTCTTTTACGGTAGGTAACGTCAGTGTGGCGTTAGGCTTTCGTGGCC
ATTCGTCAGTCCAAATTAAATCTTTTCCTGTGATTTTAAAAGGCTGAAGG
CTCTTTACCTTTTTTAGCATCATTTTAAGGAAGTGGTGGAAGGCTTTTCC
TTTCCAATCACCTTCTTTTCGAGTGCAGTATGACATTTGGGTTTCTATCA
CTTCGACTTTCATTTTGTCGTGATGTCTAACCAAGTGCTTTTCGATGATT
TCGTCTAATATCGCTTCCCTAGTATATGGCATTTGGGGATTTGATTTTTG
GAGCGACATTAACTTTCCTTTTACTAGTTGTCTTTGATAATATCGATTCT
GGTACTTTGCGTCGGCGTTTCTACTGATCGTTCTTGTTAGGCAGCTTAGT
ATTCTTGGTCCGAATATGTATATTGCCAGCACTGTTCCTCCTATTATAGC
GATGGTAGTTAGCACAGCCTCTGCTGTTTTCCAGAAGCAGCTTAGGGAGT
CGTACCAGGCACATTCGTCTTTTTCAGTGTTCTTTTCTGGTTTTAAGGAT
CCGTCTTTTATGTCGTTTCTTACATCATTGATTGCTTGTTTTCGGTCCTT
GATTTCTGTGTTTATTTTGTGGTCCAGATGTTTTACGTCATGTTTAATGA
CCTTGATATCTTGtgaattctggttgattttattttcatcactATTCAGT
CTTTTCTTTATTTGGTTTTGGGTTATGTTCAGTCTTGTGATGGAATGCGT
GTTTGCATCAATTCTTACGTCCAtggttttttctttttgtttaaggAGTT
CTTGTTCATTTTGGATTTTAGTTTGGTTTTTTTCTAACtcttggattttc
ttttcatctctttttcttttattcttttccAGATTCAGTTCTTTGGTTAC
GTTGTTTAAGGTTTTCGTCAGGATCTTTTCCTGATCAATTATCTCCTGGT
TTTGCTCTTTCAGTTGTTTTGTTTCGTTTTGGACTTGTCctagtttttct
ttcatttttaattctCTTGTTTTCCAGTAGTCCTGTCTGGTGGTCAGGTT
TGCTACTTTGTTTAGAATATTCTGGTAGTCATCCTGGAGGTCGTCCAAGT
ATTTGTTTGCCTGTTGTTGGTTCTGTCTGAGTTCGTTTTCAGATTTGGTC
AGGTTGTTATAGTCCTGGGTTAAGATTGCTTCGTTTTCTTCAATATTATT
GATTCTTTTGGCTGCTTCTGCCCAGTTTTTTCTTAGTGTTTGTTGTTCTT
TCTCTAGCTCGTATGTTTTCAGATCTGTTTTTATCTGTCCATCTATTAAG
CCGGAGATGGTATTTCCTTCATATTGGACTGGGTTGAATTCGTCCGTAGT
TTGTCCCACATCCTTTTTTGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059462-exon-scaffold_327-1491911889:204732..206708 | TCONS_00059462-exon-scaffold_327-1491911889:204732..206708 | Clytia hemisphaerica | exon |
| TCONS_00059462-exon-scaffold_327-1510915933:204732..206708 | TCONS_00059462-exon-scaffold_327-1510915933:204732..206708 | Clytia hemisphaerica | exon |
| TCONS_00059462-exon-scaffold_327-1575043694:204732..206708 | TCONS_00059462-exon-scaffold_327-1575043694:204732..206708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:204732..206708 . |
Blast
The following BLAST results are available for this feature:
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