TCONS_00059459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059459
Unique NameTCONS_00059459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059459 ID=TCONS_00059459|Name=TCONS_00059459|organism=Clytia hemisphaerica|type=transcript|length=245bp
ATAAACTGAGATACAACACAGGTCCCTGTTTTGTTTTAGCTAAATCAGTT
ACTAACTGCcacatttcaatttcatgtaACCAATGTTCAAAGTCTCCATC
TTCAGAGAACGGGGGCAATCCATACTTCTGCCCTGCCATTTTCAAGAATT
AACCACTTTAGTTTATACTTTTATAACAACcaaagttcataaactttatc
ACACTTTAGTAACCAACCAATAATATCTTTACTGCAAAACCACCG
Run BLAST on NCBI

transcript from alignment at scaffold_327:162021..162265

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059459 ID=TCONS_00059459|Name=TCONS_00059459|organism=Clytia hemisphaerica|type=transcript|length=245bp|location=Sequence derived from alignment at scaffold_327:162021..162265 (Clytia hemisphaerica)
CGGTGGTTTTGCAGTAAAGATATTATTGGTTGGTTACTAAAGTGTgataa
agtttatgaactttgGTTGTTATAAAAGTATAAACTAAAGTGGTTAATTC
TTGAAAATGGCAGGGCAGAAGTATGGATTGCCCCCGTTCTCTGAAGATGG
AGACTTTGAACATTGGTtacatgaaattgaaatgtgGCAGTTAGTAACTG
ATTTAGCTAAAACAAAACAGGGACCTGTGTTGTATCTCAGTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037422XLOC_037422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059459-exon-scaffold_327-1491911889:162021..162265TCONS_00059459-exon-scaffold_327-1491911889:162021..162265Clytia hemisphaericaexon
TCONS_00059459-exon-scaffold_327-1510915933:162021..162265TCONS_00059459-exon-scaffold_327-1510915933:162021..162265Clytia hemisphaericaexon
TCONS_00059459-exon-scaffold_327-1575043694:162021..162265TCONS_00059459-exon-scaffold_327-1575043694:162021..162265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:162021..162265 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27035	0	3.83022	1.56547	2.44862	11.856	9.23507	10.6771	1.91747	2.98452	19.4532	2.74995	7.25807	4.59716	1.24562	2.25398	0	1.77285	0	2.74413	2.69693	2.41509	0	0.611244	4.56513	14.1332	2.84731	3.94573	0	1.80149
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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