TCONS_00059451 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059451
Unique NameTCONS_00059451
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059451 ID=TCONS_00059451|Name=TCONS_00059451|organism=Clytia hemisphaerica|type=transcript|length=1705bp
TATTTTAGGATGTGAATCAGTACCCTTTGATAAATCAGCAGTCACCAACT
CAAGAAAACGAAAATCAACAACCAGTAGACTTGGAAATCCACATTGATCT
GGACAAGGACTTATCAAATAGAGATGATGAAAGTGACGTTTTCTTGCCAG
AAATCATATCCGAATCGAATCACCCGAAGGAAAAATCGTCCAAAGACGAA
CGGAATTGCAATCGAATAGAAGATAGTGATGATGAAGGTGGACATTGTGA
TGAAATACAACAAATACTCAAAATGGACAAAGCTGACATTGGGAATAAAA
ATGATATAGAAAATGCTTCTCGGAGAGCATCaaggaagaataaaaaaatc
agcTACGAAGGCATGGATTCGGACAATGCCTTGGAACCTTTAGGCGATCC
TGACTTAATACCCTCATTTGAAGATGACGAAGACAAAGATGACAAAAATG
AAAGAAGAGCAAATGAAGCATTGGAAAGAGCAATTGCAAGAATTGATAAA
TGGAACAGCCGCAAGAGACAGACCAGCCGCAAGAGACAGACCAGCCGCAA
GAGACAGACCAGCCGCAAGAGACAGAACAGCCGCAAGAGACAGAACAGCC
GCAAGAGACAGAACAGCCGCAAGAGACAGAACAGCCTAAGACAAAACAGC
CGAAAATTCATCGGCCCTGTCCATACTGTAGCGTGGGGCAGAGCGACTTA
ACTCGGCATCTAAAGCTAAAGCACAAGAACGAAACAGCTGTCATTAGTGC
AATGAAAAAAGGAAGGGTTGAACGCAATAAAGCCTTTGACTTACTGAAGA
AAGAAGGTATTTTCCAGCATAACCAAAAGCAAATGGAAAAGGAAAGCCCA
ACCTTTATGCGGGAAAGAAAGACAAAGAACGACGAAAAGGTGAAAGTTGA
GGTTTTAGTTGTTTGCGCCGCCTGTCATGGAACCTATTCAAAGACATACA
AAGCGAGACATCGACTGGAGTGCGGGAACACAAGTGGGCAGGTAATGATC
CCAATGATTCCTGCAAAAGATCTTGTCATCACCCATTATGCGGATGACTT
CAAGAAGGTGTTGGATAAAATGAAGATAGACGACGTTTCGTCTCTGGCCA
AAACCGATCCATATATCATGGTGGTTGGAGCAAGAATCTACAACGGAAAC
AAATGTAAAGACGAGAAAATACACGAAACTGAAAAACGCGTCCGCTCAGC
AATGCGTTTGCTGAGCCGTTTGTTAATTCAATTCAGAATCTCGTTTGGCG
AAGACAAAAACTTATCTTTCTTGTACAACAAAAATAATCTCAGTCACTTG
CGCTTCGCAATCGAGGTGCTGTCCGAAGGTGAAGCAGAAATGAAGTCTGG
GCTGAAGGTACAGATCCAAAACGTGATAAAGCAAGCAGGAAAAATCTTAG
AAGCGCATTTTTTAGTAGAAGGGGAGAGCCAACTTCCCGAAGATGTGTGT
GACTTCATCAAGGTTTTTCATCTTGTTGAAAATGAAATCTTCAACGGAGC
CCTctataaaatcaaacaaaaacgtAATAAATCCACAAGGAAGCCCGCCA
ATCTTCCTGACGAAGAGCTGGTGCAAGAACTCAGGAAATACTTACTAAAG
ACCATgctcaaagaaaattttatattcaAGTCTCCTGAGGATGTTTTTGT
GGAAGTTCGAGACTCTGCGTGTGCCAGACTGACCATGTTCAATGGGCGTC
GAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_327:456975..462311-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059451 ID=TCONS_00059451|Name=TCONS_00059451|organism=Clytia hemisphaerica|type=transcript|length=5337bp|location=Sequence derived from alignment at scaffold_327:456975..462311- (Clytia hemisphaerica)
TATTTTAGGATGTGAATCAGTACCCTTTGATAAATCAGCAGTCACCAACT
CAAGAAAACGAAAATCAACAACCAGTAGACTTGGAAATCCACATTGATCT
GGACAAGGTGACAATGGTTTGTTTTTAACAGTGGTTAATGATAATTGCGG
TTTGGTAGTTGATTCAGAGAATTTGACAAATGTCAATCCTTCTTTAACTT
ATAATTCCCGGACGAGAGGAAATACTTAAATACTTAAATTTTTAGGATTC
AAAATGAATCTAAGTCTATCTTAANCAATCCTTCTTTAACTTATAATTCC
CGGACGAGAGGAAATACTTAAATACTTAAATTTTTAGGATTCAAAATGAA
TCTAAGTCTATCTTAAGACTTAGCTTAAGGCTTAGCCAGCGCACCGCTTT
TTGAAAAGTTGATTTATTTTGCAATTTTTTTCTTTGAAATCAAAAAACTT
CAAAATGGGCTAAACGCTTGTAGCTTGAGAGTTAGACAATGGTTTTGGTA
CCATTGAAAAGCAATTTTCATACTCTTTCTAAAAGCATTCGGTTTATGCC
CCTTTAAAGCAAGTAGTCAGGAGCTATGACCAAAAGACACTGTATCAGTA
AAACGTCCTTTTCAAACCGTATATCTACGTTATCCGCCGTCTAAGGGTTA
AGAGAACTAATTTTCGCGCTTGACACCCACTTTAGGCTAAATTCTTTGAT
TTTCCTACCGGGATATTTGAAATTTTAGAAAAAATTACATNAAAACGTCC
TTTTCAAACCGTATATCTACGTTATCCGCCGTCTAAGGGTTAAGAGAACT
AATTTTCGCGCTTGACACCCACTTTTGGCAAAATTCTTTGATTTTCCTAC
CGGGATATTTGAAATTTTAGAAAAAATTACATTTTGAGGAACCTATATCA
CTTAAGGAGGCCTAAGGAGGCCTCCAGAGGCCTAATTTTGCATTCATCCA
TTGTTTGGAAATCCTTTATCGGAGACTATCAAAATTCTCATCTTTCATTC
CCCATTTTTTAACATAAACCCAGGATGTCTACTGGACCTCGAAATAATTC
TCATCCTTCATTCCCCATATTTTAATATAAACCAGGATGTCTGATGTCTG
TCAAACATTTCAAATCTTGAAATTCCAACACCCTGTAGCGTGTTGTACAC
ATTATAAATAGACTGGTGTAATATATTTAACTATTTTCCCTTTCAGGACT
TATCAAATAGAGATGATGAAAGTGACGTTTTCTTGCCAGAAATCATATCC
GAATCGGTACGTTCCCATTATAAATCGAAAAATTTAGTCAAACCAATCTT
CATTGTTGGGAAATTCGTCCATTTAGGAACCAAATCTTTTTCTCACTAAA
TATCCGCGTGTTCTTATTATAGAACAATGTAATCATGGTTTCAGCCCCCC
CCTCTCCCAACGAAAGAGGTCCCCTTGAAAATTTGCCTTGAGCTAGGTAC
CCCCAGTGACTTGAAATTTCTTTTGAATTCCAAGTTTCTGTTCTTTTGTT
ATCTCTAAAATCTTCAAGATACTGTACGCTTTTCCAGTGTGAGAAGCGCT
CACATGTATATACCCCTTTAAAAAAACTTTTTATTACGCTATGGAAAACT
ACGCTTCATTCAAAACAAAACAAACAAAACAAACAAAAATTTGAGCAGAG
TATATGAAAATAGAAAAGTGGAATAAAGAATTTCCTAATTTGGAAAATAT
AGAGAAAGCCCACTGAGTTTCTATCAGATTAGTCACAGGTACCCCCCATA
TAATTGCTATACTGTAGCCCCCTCCTAGAGATTGGACCTCGGTCACCTTT
AGAAACCTGGGGGGGGGCTGAAACCGTGGTATTGCACCGCAAGAATCGTG
TCCATTGAACAACGTTTTCTGGTTATATGGTAGATTATGTCCTCATTTTT
TAAGAATCACCCGAAGGAAAAATCGTCCAAAGACGAACGGAATTGCAATC
GAATAGAAGATAGTGATGATGAAGGTGGACATTGTGATGAAATACAACAA
ATACTCAAAATGGACAAAGCTGACATTGGGAATAAAAGTAAGTAGTCACA
ATTTTGATTTGAAAGCTCTGTTCAAAAATCATTTCGCCAAAGTTAGGTAA
TGATATATTGAACTTGTAAAAAAAAATCTCTTCTACTATACTAATGGTAC
TTACAGAACACTATAATAATATGCCTTTCTGTGTTACAGATGATATAGAA
AATGCTTCTCGGAGAGCATCAAGGAAGAATAAAAAAATCAGCTACGAAGG
CATGGATTCGGACAATGCCTTGGAACCTTTAGGCGATCCTGACTTAATAC
GTAAGCTACGCAAATTTTACTACCATTGTTATACAGTAATGTTTTCAAAA
TTAAAGCCGATGTTTTTTAAGGAGTGGTTCGGTTAAAAAATCATTTCTTT
CTCAAGTATCCCCTCGTCGGATTCTCATTTTCAAAAGAGGAACAAAAATA
TATACATTTATATAGCAAGTCTTGTTCATTTAAAACAAAGTTTTAAAAAT
AATAAGAAATGGCTAAAAGAGCTCCAAGCCAAAATAATATTACATCGTNT
AAAAATAATAAGAAATGGCTAAAAGAGCTCCAAGCCAAAATAATATTACA
TCGTAGATGTTTGAAAAGTTTAGACTACCCAGTCTACAAGACTCTACTGG
GGTTTTAATGTAAATCACTGTATAAATTGGCTTTTCTTCTAAAACNCGTA
GATGTTTGAAAAGTTTAGACTACCCAGTCTACAAGGCTCTACTGGGGTTT
TAATGTAAATCACTGTATAAATTGGCTTTTCTTCTAAAATAAGCTTTATT
CGCATAAGGCCCTCGTGAAGTCACATACATTAAAGTTGCTCAAAATAGCA
GGGTTCTTTCTGTAAAAAATGAGAATCGATTGGCTAAAATAAAATTTGAG
AGCACTCGTGTTTTCAGTAGTAAAGTTTAAAAAAAATTAATTGAGTTAGA
AACGCTGGACTCCTCATCATAAGATATTAAAAAAAACATTTTTAGCGAAC
CATTCGTAATGTTGGATTTTTCATCTTTTATCTACCTTAAGGGAGCTAAT
TTTCGCGGTCCGAACCAAACTGGTTCTTCAGGATTTCCAGAATTTCCCAA
AGCTGTGTATTTAATGGCTTAAAAGCTACCAATGTTCAGAATTTAGATAA
AAAAACTTTTGAGTGGTGCGGATGTGAAAACTACTTATTAGCGAAGTTTC
GCAAGAGGCTATTTAGGATTTGAAATGTACCACTTGAACCTGTACATAAC
CCGACCGACCAAAATCTTCATGTGTATAATTCTTAATGTACAGGAAGTCG
TACATTTCAAGTCACTAAGGTTGGGCTGAACCCTTTACAGTCTGGTTGCT
TATATAAAATGTGTATACTAAAAATGGCGATTTAAAAATATCAGTGGGCG
TTACAGGAGAACTTTGCAACAGGGTATCACCATTTTCGAGCTTGCTTCTT
ATATAAAATATTTAGTAGATTATTCTAAATCCGTTATAGCCTCATTTGAA
GATGACGAAGACAAAGATGACAAAAATGAAAGAAGAGCAAATGAAGCATT
GGAAAGAGCAATTGCAAGAATTGATGTAAGTTGAGAATCTCGATTAGTTT
TGGGATGGATTCCAGAAAGAACACATTCAATACAACGACCTACAGAGTTT
TTTTTGCTGAATATAGCAGTTTAAAAGATTCCGTATGGATTTAATTTCGA
TCTCAGGTATTTTAGACCCTCTCTCCTCCCCCTTGTTTGCTTGGATAATG
TATATGACGTCATAAAACACTAGCTGTTTGTCTCACCCCCTTGAGCGAAT
GCTCCCTAAGCAACTTAAAAAAATTCAGCTCATTTCTGTCACAGGGCTTG
TGTTGCTCAGCCAACTTGCAAATTATTTTGGTCATCTTCTTCAGGGTCAA
ACGTCAGTCAATACGGAAAATATTGACCTTATCCTAACGAATATGTAAAA
TTAGTCATTACCCAATAATTTTTTTTTTAATTATTAGGCTTTGTGTGCGC
CGTTTGAACAATCCTCTCCTGTACGAGAAATCAGTATTTTAAACGATTCC
GCCATCGGTTTGGGTGACAGTGTTGGTCAGATAATTGACACCGACAATGA
ATCTGACGAAAACGATAATGTCATCTTAGAAATGGAACAGCCGCAAGAGA
CAGACCAGCCGCAAGAGACAGACCAGCCGCAAGAGACAGACCAGCCGCAA
GAGACAGAACAGCCGCAAGAGACAGAACAGCCGCAAGAGACAGAACAGCC
GCAAGAGACAGAACAGCCTAAGACAAAACAGCCGAAAATTCATCGGCCCT
GTCCATACTGTAGCGTGGGGCAGAGCGACTTAACTCGGCATCTAAAGCTA
AAGCACAAGAACGAAACAGCTGTCATTAGTGCAATGAAAAAAGGAAGGGT
TGAACGCAATAAAGCCTTTGACTTACTGAAGAAAGAAGGTATTTTCCAGC
ATAACCAAAAGCAAATGGAAAAGGAAAGCCCAACCTTTATGCGGGAAAGA
AAGACAAAGAACGACGAAAAGGTGAAAGTTGAGGTTTTAGTTGTTTGCGC
CGCCTGTCATGGAACCTATTCAAAGACATACAAAGCGAGACATCGACTGG
AGTGCGGGAACACAAGTGGGCAGGTAATGATCCCAATGATTCCTGCAAAA
GATCTTGTCATCACCCATTATGCGGATGACTTCAAGAAGGTGTTGGATAA
AATGAAGATAGACGACGTTTCGTCTCTGGCCAAAACCGATCCATATATCA
TGGTGGTTGGAGCAAGAATCTACAACGGAAACAAATGTAAAGACGAGAAA
ATACACGAAACTGAAAAACGCGTCCGCTCAGCAATGCGTTTGCTGAGCCG
TTTGTTAATTCAATTCAGAATCTCGTTTGGCGAAGACAAAAACTTATCTT
TCTTGTACAACAAAAATAATCTCAGTCACTTGCGCTTCGCAATCGAGGTG
CTGTCCGAAGGTGAAGCAGAAATGAAGTCTGGGCTGAAGGTACAGATCCA
AAACGTGATAAAGCAAGCAGGAAAAATCTTAGAAGCGCATTTTTTAGTAG
AAGGGGAGAGCCAACTTCCCGAAGATGTGTGTGACTTCATCAAGGTTTTT
CATCTTGTTGAAAATGAAATCTTCAACGGAGCCCTCTATAAAATCAAACA
AAAACGTAATAAATCCACAAGGAAGCCCGCCAATCTTCCTGACGAAGAGC
TGGTGCAAGAACTCAGGAAATACTTACTAAAGACCATGCTCAAAGAAAAT
TTTATATTCAAGTCTCCTGAGGATGTTTTTGTGGAAGTTCGAGACTCTGC
GTGTGCCAGACTGACCATGTTCAATGGGCGTCGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037418XLOC_037418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059451-exon-scaffold_327-1575043694:462205..462311TCONS_00059451-exon-scaffold_327-1575043694:462205..462311Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:461056..461115TCONS_00059451-exon-scaffold_327-1575043694:461056..461115Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:460275..460407TCONS_00059451-exon-scaffold_327-1575043694:460275..460407Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:460012..460122TCONS_00059451-exon-scaffold_327-1575043694:460012..460122Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:458737..458822TCONS_00059451-exon-scaffold_327-1575043694:458737..458822Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:456975..458182TCONS_00059451-exon-scaffold_327-1575043694:456975..458182Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:462205..462311TCONS_00059451-exon-scaffold_327-1510915933:462205..462311Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:461056..461115TCONS_00059451-exon-scaffold_327-1510915933:461056..461115Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:460275..460407TCONS_00059451-exon-scaffold_327-1510915933:460275..460407Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:460012..460122TCONS_00059451-exon-scaffold_327-1510915933:460012..460122Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:458737..458822TCONS_00059451-exon-scaffold_327-1510915933:458737..458822Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:456975..458182TCONS_00059451-exon-scaffold_327-1510915933:456975..458182Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:462205..462311TCONS_00059451-exon-scaffold_327-1491911889:462205..462311Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:461056..461115TCONS_00059451-exon-scaffold_327-1491911889:461056..461115Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:460275..460407TCONS_00059451-exon-scaffold_327-1491911889:460275..460407Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:460012..460122TCONS_00059451-exon-scaffold_327-1491911889:460012..460122Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:458737..458822TCONS_00059451-exon-scaffold_327-1491911889:458737..458822Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:456975..458182TCONS_00059451-exon-scaffold_327-1491911889:456975..458182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:456975..462311 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.183905	0.0268514	0.0788098	0	0.555982	0.000234618	0	0.664565	0.194472	0	0.938381	0	0	0	0.171061	0.354606	0.267777	0.00179925	1.66054e-07	0.206362	0	0	0	0.315373	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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