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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059448 ID=TCONS_00059448|Name=TCONS_00059448|organism=Clytia hemisphaerica|type=transcript|length=1688bp AAAGAAAGCTTTTTAATTTACTTGTTATTAGATACTTTCTGTTATATTAC AATGAATACACAAAAAGTGAAAGCATTCTTATCGCAAAAAAATGTCAAGA TGTAAGTTGTAAATAAATAATCTTTATTACTATTTTATATCAACAACAGC AGACGTTTCTTTGCTGTTTCTGCTCTTGTTTGTATCTACTATAAAATAAA GTTACATGTCTAGctacttttttgttgttgttctgtcaaaatcaaaaacc aATAGATACTTTGAACAATatgaaaccaaattttttatttcttatttttt agtgtTTCTGTGGTGCCATCGTCATCAAGTAAACAATGTCATCATACCAC TCAACCACCACAACTTCCATCAATTtcccaacaacaacaaaagaagaaat ctCTATTCATATTTCCAACTTCGTCTTCAACTTCGTCCTCAACTAATTCA CCACATCAGCCTGTCATAAACCTTGCAACACAACCGCTCAACTTCATacc agaaagaaaaattatcccCAAAGAATTATACAACGTTCCATCATCTTCAA ATTCAACCACCACCACTACTGCCTCTCCTTCCTCTCAAATTACTGAACCA CCAAAGAAAAAGATCCgttttaattttgatagagacatttcactttttaa agaGGTAACGTCATGTGGCACGTTTCTTCAGAAAAAAGGCACTCCTGCCA GAAGAGAAACCTGGGATAAAGTTGCTGAAAATATGGCCAAATTATACCCA CAAGATGGggaatacaaaaataaaactgTTAGAGAGCGCGTGACAAATGA AATGAAGGAACACCGAAAAAAAAACAGTGCTGAACTTAAAGGGTCTGGCA TTGCACCTGAGTACAATGAAAGGGACAATCTTTTGGATGGACTTATAAGT ATGGAAGATGATTATTTGCATGAAAGAGAGGAGGAAAACAATAACCAagc gaaaaagaagaaagaaaaggaaGAGAATGGAAAAGAACAAAGGAACAGAT GCTTTGAAAGGTTTTCTGAGActgaaaaaagattgaagaaggaaaaaaag ccACGGCAGCAAAGgtcagataaaaaaaaatttgacagcAAGGAGATGAT GGATTTTGTGAAGCAAAAGTGGGATAATGATAAATTAGTTAAGGAAAAGG ATCAGTCTTTGCTGGAAAGAGAAATTGCTTTGAAGGAAGAAGAGCACGAG AGGACAAATTTACTAATTGCATCCTTGAAAGAAACAATCCAGACTCAAAA AGCCTTGATCGAGAGACAAAACGAACAcattaaattattattaaaggAGA AAGAATCATAGGGTGACGTTAAAAATCATCTTGTGAATTGTTTTCCTtct aatattattttgatgttttcgtTTTGTATACAAACGTATTCCTTTCAAGG CTTTTTAGTTTAGATGTTTTGTTGCAAGTATGAAATAAGTACTTTTGTTC TCTCACTCTCTTCTTCTTTCAAAAAAGCTtctctttcaaaaaatcaagtc aaaaaatGGATTGAGAAATCATCTGTTCCATTTccttaattttattttat catttccTAGAAAAAACCAAAGTTTTTCCATAGAAAACTTCACATAAATT ACTTTTGCTTCATGTTCtcgtcattttttatctttctgttgtttttttta tctcaTCTTTTGTGTCAGATTGAGAGAAGTAGACTGAT Run BLAST on NCBI transcript from alignment at scaffold_327:452838..454525- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059448 ID=TCONS_00059448|Name=TCONS_00059448|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at scaffold_327:452838..454525- (Clytia hemisphaerica) AAAGAAAGCTTTTTAATTTACTTGTTATTAGATACTTTCTGTTATATTAC
AATGAATACACAAAAAGTGAAAGCATTCTTATCGCAAAAAAATGTCAAGA
TGTAAGTTGTAAATAAATAATCTTTATTACTATTTTATATCAACAACAGC
AGACGTTTCTTTGCTGTTTCTGCTCTTGTTTGTATCTACTATAAAATAAA
GTTACATGTCTAGCTACTTTTTTGTTGTTGTTCTGTCAAAATCAAAAACC
AATAGATACTTTGAACAATATGAAACCAAATTTTTTATTTCTTATTTTTT
AGTGTTTCTGTGGTGCCATCGTCATCAAGTAAACAATGTCATCATACCAC
TCAACCACCACAACTTCCATCAATTTCCCAACAACAACAAAAGAAGAAAT
CTCTATTCATATTTCCAACTTCGTCTTCAACTTCGTCCTCAACTAATTCA
CCACATCAGCCTGTCATAAACCTTGCAACACAACCGCTCAACTTCATACC
AGAAAGAAAAATTATCCCCAAAGAATTATACAACGTTCCATCATCTTCAA
ATTCAACCACCACCACTACTGCCTCTCCTTCCTCTCAAATTACTGAACCA
CCAAAGAAAAAGATCCGTTTTAATTTTGATAGAGACATTTCACTTTTTAA
AGAGGTAACGTCATGTGGCACGTTTCTTCAGAAAAAAGGCACTCCTGCCA
GAAGAGAAACCTGGGATAAAGTTGCTGAAAATATGGCCAAATTATACCCA
CAAGATGGGGAATACAAAAATAAAACTGTTAGAGAGCGCGTGACAAATGA
AATGAAGGAACACCGAAAAAAAAACAGTGCTGAACTTAAAGGGTCTGGCA
TTGCACCTGAGTACAATGAAAGGGACAATCTTTTGGATGGACTTATAAGT
ATGGAAGATGATTATTTGCATGAAAGAGAGGAGGAAAACAATAACCAAGC
GAAAAAGAAGAAAGAAAAGGAAGAGAATGGAAAAGAACAAAGGAACAGAT
GCTTTGAAAGGTTTTCTGAGACTGAAAAAAGATTGAAGAAGGAAAAAAAG
CCACGGCAGCAAAGGTCAGATAAAAAAAAATTTGACAGCAAGGAGATGAT
GGATTTTGTGAAGCAAAAGTGGGATAATGATAAATTAGTTAAGGAAAAGG
ATCAGTCTTTGCTGGAAAGAGAAATTGCTTTGAAGGAAGAAGAGCACGAG
AGGACAAATTTACTAATTGCATCCTTGAAAGAAACAATCCAGACTCAAAA
AGCCTTGATCGAGAGACAAAACGAACACATTAAATTATTATTAAAGGAGA
AAGAATCATAGGGTGACGTTAAAAATCATCTTGTGAATTGTTTTCCTTCT
AATATTATTTTGATGTTTTCGTTTTGTATACAAACGTATTCCTTTCAAGG
CTTTTTAGTTTAGATGTTTTGTTGCAAGTATGAAATAAGTACTTTTGTTC
TCTCACTCTCTTCTTCTTTCAAAAAAGCTTCTCTTTCAAAAAATCAAGTC
AAAAAATGGATTGAGAAATCATCTGTTCCATTTCCTTAATTTTATTTTAT
CATTTCCTAGAAAAAACCAAAGTTTTTCCATAGAAAACTTCACATAAATT
ACTTTTGCTTCATGTTCTCGTCATTTTTTATCTTTCTGTTGTTTTTTTTA
TCTCATCTTTTGTGTCAGATTGAGAGAAGTAGACTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059448-exon-scaffold_327-1575043694:452838..454525 | TCONS_00059448-exon-scaffold_327-1575043694:452838..454525 | Clytia hemisphaerica | exon |
TCONS_00059448-exon-scaffold_327-1510915933:452838..454525 | TCONS_00059448-exon-scaffold_327-1510915933:452838..454525 | Clytia hemisphaerica | exon |
TCONS_00059448-exon-scaffold_327-1491911889:452838..454525 | TCONS_00059448-exon-scaffold_327-1491911889:452838..454525 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_327 | supercontig | scaffold_327:452838..454525 - |
Blast
The following BLAST results are available for this feature:
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