TCONS_00059432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059432
Unique NameTCONS_00059432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059432 ID=TCONS_00059432|Name=TCONS_00059432|organism=Clytia hemisphaerica|type=transcript|length=1662bp
GTGATTTTAGACCAGATTCGATTTTTGTTATGATACATATTTGTTGATTT
CATATTTTAAGTAACCGGTTCTAATCTTCACAACAGTACATTTTTGTCGT
CGTACAAGAAAATAATGGaaattgtaaataaaaaaagcCTGACAATTCAT
TCGTTCctaaaagactttgaaaataaattccctAATACAAATATATTGTT
AACGGCAACGTTTTCGTTCACTTGATGGAATATTATCAGGATGTTTCACT
CGTGGATGATGAAGGTTGGAACGTTCTTCATTGGGTTGGTATGAATNAga
ctttgaaaagaaattccCTAATACAAATATATTGTTAACAGCAACGTTTT
CGTTCACTTGATGGAATATCATCAGGATGTTTCACTCGTGGATGATGAAG
GTTGGAACGTTCTTCATTGGGTTGGTATGAATGGAACAGTTCGTCATTTG
GAAAAGTTTGGTCAACAAACAATCGAAATGTTGATCTTCACAACAGTACA
TTTTTGTCGTCGTACAAGAAAATAATGGAAattgtatataaaaaaagcCT
GACAATTCATTCGTTCCTAAAGGACTTTGGGAAGAAATTCTCTAATACAA
ATATATTGTTGACGGAACAAGAAAAACGGAATGGAAAATCTCACTCTTGT
GGATGTTGTCGAAACAATACAGAGACAGAGACAGCGACAGAGACAGTGAC
AGATACAGAGACAGTGACAGAGAGATAGAGACTTTTACAGATGCAAGAGA
AACATGTCAAGAACTTCCACCGATTAAATATCTGAATACAGtacagaaaa
ttgaaaaaaatacacgTGTCAAGAAATCACGTGCCAAAAAAAAGGCAAct
gagaaaaacaaaataatgaggaaatttaatttgttatttttgttttcagc
caCTTCAGCGTACTACTTCACATCACAGGAGCAGACTTTTATAGATGCAA
GAGAAACATGTCAAGCACTTCCACCGTTCAATGGAGTGCAATTTgatctt
gttgttgttgacacTACGTTCAGTCGGCCAAATAAACACTAGAATGTTGC
GAACAAAACTTTTGGACAGTACATTCTCTTTACCAAACAAATGGTCATTG
AAGACAATATTTCGTTAttgtttatttattaatttattcatttatttcat
tattatttatttatttatttatttatttgtttgcgATTTTGTTGTGTTGC
TCTGATGGGTATGGAGGGGCTACCCCCGAAAGCCTTTAGCATCATAGGTT
TGTAATAAGAGCAAATAAATATGTTTTAATGTTTCTTAGCTTTTATCTGT
TTTGTGCAATGCTCTCCTGGCAATTAATCATTATAATTGGACAAAAAAAT
GGACTACTAACAACATGGCGGGCTGCTATCCAAGATGTAGCTGAGACAAC
GAACTTCCAATACTGTCAATAGAAAAGAATCACTACGGGACATAATTCAG
CAAACTTTCtgcaaaaactgaaaaagaaactAAACCTTTCAAGATTGTCT
GAAGTGATGGCCAAAAGTTCTATCATGTGATTTTCATTTGTTATGATACA
TATTTGTTGATTTCATATTTTAAGTAACCGGTTCTAATCTTCACAACAGT
ACATTTTTGTCGTCGTACAAGAAAATAATGGAAATTATAAATCAGAAAAG
CCTGATAATTCA
Run BLAST on NCBI

protein sequence of TCONS_00059432-protein

>TCONS_00059432-protein ID=TCONS_00059432-protein|Name=TCONS_00059432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MLSKQYRDRDSDRDSDRYRDSDREIETFTDARETCQELPPIKYLNTVQKI
EKNTRVKKSRAKKKATEKNKIMRKFNLLFLFSATSAYYFTSQEQTFIDAR
ETCQALPPFNGVQFDLVVVDTTFSRPNKH
Run BLAST on NCBI

transcript from alignment at scaffold_327:213165..218400-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059432 ID=TCONS_00059432|Name=TCONS_00059432|organism=Clytia hemisphaerica|type=transcript|length=5236bp|location=Sequence derived from alignment at scaffold_327:213165..218400- (Clytia hemisphaerica)
GTGATTTTAGACCAGATTCGATTTTTGTTATGATACATATTTGTTGATTT
CATATTTTAAGTAACCGGTTCTAATCTTCACAACAGTACATTTTTGTCGT
CGTACAAGAAAATAATGGAAATTGTAAATAAAAAAAGCCTGACAATTCAT
TCGTTCCTAAAAGACTTTGAAAATAAATTCCCTAATACAAATATATTGTT
AACGGCAACGTTTTCGTTCACTTGATGGAATATTATCAGGATGTTTCACT
CGTGGATGATGAAGGTTGGAACGTTCTTCATTGGGTTGGTATGAATNAGA
CTTTGAAAAGAAATTCCCTAATACAAATATATTGTTAACAGCAACGTTTT
CGTTCACTTGATGGAATATCATCAGGATGTTTCACTCGTGGATGATGAAG
GTTGGAACGTTCTTCATTGGGTTGGTATGAATGGAACAGTTCGTCATTTG
GAAAAGTTTGGTCAACAAACAATCGAAATGTTGATCTTCACAACAGTACA
TTTTTGTCGTCGTACAAGAAAATAATGGAAATTGTATATAAAAAAAGCCT
GACAATTCATTCGTTCCTAAAGGACTTTGGGAAGAAATTCTCTAATACAA
ATATATTGTTGACGGAACAAGAAAAACGGAATGGAAAATCTCACTCTTGT
GGATGTTGTCGAAACAATACAGAGACAGAGACAGCGACAGAGACAGTGAC
AGATACAGAGACAGTGACAGAGAGATAGAGACTTTTACAGATGCAAGAGA
AACATGTCAAGAACTTCCACCGATTAAATATCTGAATACAGTACAGAAAA
TTGAAAAAAATACACGTGTCAAGAAATCACGTGCCAAAAAAAAGGCAACT
AAGAAAAACAAAATAATGAGGAAATTTAATNGAAAATTGAAACAAATACA
CGTGTCAAGAAATCACGTGCCAAAAAAAAGGCAACTGAGAAAAACAAAAT
AATGAGGAAATTTAATTTGTTATTTTTGTTTTCAGCCACTTCAGCGTACT
ACTTCACATCACAGGAGCAGACTTTTATAGATGCAAGAGAAACATGTCAA
GCACTTCCACCGTTCAATGGAGTGCAATTTGATCTTGTTGTTGTTGACAC
TACGTTCAGTCGGCCAAATAAACACTAGAATGTTGCGAACAAAACTTTTG
GACAGTACATTCTCTTTACCAAACAAATGGTCATTGAAGACAATATTTCG
TTATTGTTTATTTATTAATTTATTCATTTATTTCATTATTATTTATTTAT
TTATTTATTTATTTGTTTGCGATTTTGTTGTGTTGCTCTGATGGGTATGG
AGGGGCTACCCCCGAAAGCCTTTAGCATCATAGGTTTGTAATAAGAGCAA
ATAAATATGTTTTAATGTTTCTTAGCTTTTATCTGTTTTGTGCAATGCTC
TCCTGGCAATTAATCATTATAATTGGACAAAAAAATGGACTACTAACAAC
ATGGCGGGCTGCTATCCAAGATGTAGCTGAGACAACGAACTTCCAATACT
GTCAATAGAAAAGAATCACTACGGGACATAATTCAGCAAACTTTCTGCAA
AAACTGAAAAAGAAACTAAACCTTTCAAGATTGTCTGAAGTGATGGCCAA
AAGTTCTATCATGTGATTTTCATTTGTTATGATACATATTTGTTATGATA
CATATTTGTTGATTTCATATTTTAAGTAACCGGTTCTAATCTTCACAACA
GTACATTTTTGTCGTCGTACAAGAAAATAATGGAAATTGTAAATAAAAAA
AGCCTGACAATTCATTCGTTCCTAAAAGACTTTGAAAATAAATTCCCTAA
TACAAATATATTGTTAACGGCAACGTTTTCGTTCACTTGATGGAATATTA
TCAGGATGTTTCACTCGTGGATGATGAAGGTTGGAACGTTCTTCATTGGG
TTGGTATGAATGGAACAGTTCGTCATTTGGAAAAATTTGGTCAACAAACA
ATCGAAATGTTGATCAATGGAACAGACAAATTTAAACGAACGTAAGTAAG
TATTTTAAGTATTTAAAAAATAATGGTTACATTACGTCTTATTTACTTTA
TTATGGAAACATAATATTTTGTTCACAGCTTTTGGTGTCAATGGTGAAAA
CAACAAAAAACCTAAGTCCATGAAGGAAAACAAAGGAAGTGCCGGGTGTC
CCAGAAAAAAAGTTCCGCCCTTTGAAGTGAATTTTCTCGAGTTCTATGAA
CTTTTAAATAATGAATCTTTTTGCATTGGAAAGAGGAAGGATAAACTTAA
ATTTTGAGGGGTCATTTATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTGATCAAAAGTTATAGCCTAAATGCTAAAACATCA
CTTTTCAAAAAAGTCAAAAAAAGACGAAAAAAGAGGAGATCAAATCATCA
TAAAGAAAGCACTTCTGTTGCCAATTTATTTACGCTCAAAGTTTTTTCCA
TACAGTTCTTTAAGGTGTCTTTATTTTATTGTTAATTCCTTTTCTTTTCT
TTGTCTAATTTAACGAGCTCCCATGGGCATAATCAAGGGGCACGAGATCC
AAACATTCATCAAAATCTTACCAAGAGTTTTCAAAGCTTTTTTTGTACAC
ATTGTTGAGAGTGAGAAGGAAAAAGCTTGTATCAAGTGTGTTGAGAAAAA
TGCCTCGCCTAACTATTCCTCAAAAAACTTGGGTGTGTATTGAGTTTGCA
CGCATAAATAATGCCGCAAAAGTACTGAGACGATGGCCTAACCAATGGCC
CAATGTTCCTCCTCCGACAAGAGAAGCCATACTCAAAAACTTTCGAAAAT
TTGGTAGAGAAGGAACTTGCCACAACCTCAACAAAGGTCGAAGTGGCAGA
AGGCCCACTGTGATGACACAGGCGAACAAGAATATGGTTAGAAGATCTTT
ACAGCAAAATGGTCGTCGTTCATGTCGAAGGAACGGGGTCAACCTTACTC
GATCCACTTTCAATCGAATCGTCAAGGAAATAAAATTTCATCCTTATGTG
TTGGTAAAGAAGTAAAAACTAAAAAATCAAGATCCAGCAAGAAGATTAAC
CTTTTGCAACTGGTTCAGAAATGAATAATGCAAATTTTTTATCAAATTTG
ATCATTTCTGACGAGGCAACTTTCAGCATGAACTCTGATGTGAATACTCG
TAATGTTATTTACTATTCTGAACATGGTCAATGGCATCCCGATGACCACT
ATGTGGAATTTGAGCAAGGGGCGGATCAGGTGATGGTTTGGATGGGCTTA
ACAGGAAATGGATTAGTGTTGGGTCCACATTTTGTTCAGGGGAGGTTGGA
TACAAGGGAATATATGAGAATCGTGTGTTATAATGTCATTCAACAAGACT
TTGTGAGGCTTGGGATCAATAAGGCAACGTCTTGGTGGATTTAAGACGGA
GCAACTCCCCACACAAGCAACGCTTCACTTCGCTATCTTCGTGGTCAGTT
TCCCAGAAAGGTGGTCAGCAATAGAGGAGATGTTGAGTGGCCCCCAAGAT
CGCCTGATCTCACTATATGTGATTTCTTTTTATGGGCTTACATGAAACCG
CAGATCTGGGAACAACCCCAAAATTTGCAACCTCAGACCCTTAATCAATT
GAAAGCTTCAATTAGAAATGTTGCAGCTAACCTCGACCCTCAAATGGTTC
AAAATGCTTTTGCAGGAATGATTAATCGTGTAAATAAGTGCTTTGGAAAA
AATGGAAATACATTTCCTGATGAATAAAAAACCTTTTGTGTCTTTGTCTT
AGAATGAATTTAATCCCCTCTTTTTCGTCTTTTTTAGACTTTTTTTGAAA
AGTGATGTTTTAGCATTTAGGTCATAACTTTTAATCAAGTTGACTTAATT
TAATAAATAACCCCTCAAATTTTAAGTTTATCCTTCCCCTTTCTAATGCA
AAAAGATTCATTATCTAAAAGTTCATAGAACTCGAGAAAATTCACTTCAA
AGAGCGACTGTTGTAAGCCACTTCAGCGTATTTCTTCACATCAGAGGAAG
AGACTTTTAAAAATGCAAGAGAAACATGTCAAGAACTTCCACCGATTAAT
GGCGTACAATTTGATCTTGTTGTTGTTGACACTATGTTCAGTCGGCCACC
TTTTCAGAATTAGCATAACTTGTGGTTCGAGTATTTTTCGACCGTTTATG
ACAAGGGGGCAAGATACCCGTCCGACATAAAATAAGTTTTGTAACAGACC
CCCCTTTTCTTAACATTGAGTTTGAAACATCCCTTTCTCACAGACCTGGT
AGGATTTTTTGAGCTGGGGGTAAAAATAACGGATCAAAAGTCAATGGGGA
TTGATATTGTTTGTTATCACTGGGATTTGAATTCCATTGTTTTGAGCCAG
AAAATTCAGTGGGGAAGGAAAAAATAGCACAATATTTTAGCAGTGANCTT
CAGCGTATTTCTTCACATCAGAGGAGGAGACTTTTACAAATGCAAGAGAA
ACATGTCAAGCACTTCCACCGATTAATGGAGTGCAATTTAATCTTGTTGT
TGTTGACACCATGTTCAGTCGGCCAAATGAACACTAGAATGTTGCGAACC
AAACTTTTGGACAGTACATTCTCTTTACCAAACAAATGGTCATTGAAGAC
ATTATTTCGTTATTGTTTATTTATTCATTTATTTCATTATTATTCATTTA
TTTACTTATTTATTTATTTATATTTGATTTTGTTATGTTGCTCTGATGGG
TATGGAGGGGCTACCCCCGAAAGCCTTTGATATCATAGGTTTACAATAAG
AGCAAATAAATGATTTTTAATGTTCCTTAGCTTTTATCTGTTTTGTGCAA
TGCTCTCCTGGCAATTAATCATTATAATTGGACAAAAAAATGGACTACTA
ACAACATGGCAAACTTCCAATACAGTCAATAGAAAAGAATCACTATGGGA
CATAATTCAGCAAACTTTCTGCGAAAAACTGATAACGAAACTAAATTTTT
CAAGATTGTCTAAAGTGATGGCCAAAAGTTCTATCATGTGATTTTAGACC
AGATTCGATTTTTGTTATGATACATATTTGTTGATTTCATATTTTAAGTA
ACCGGTTCTAATCTTCACAACAGTACATTTTTGTCGTCGTACAAGAAAAT
AATGGAAATTATAAATCAGAAAAGCCTGATAATTCA

Coding sequence (CDS) from alignment at scaffold_327:213165..218400-

>TCONS_00059432 ID=TCONS_00059432|Name=TCONS_00059432|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_327:213165..218400- (Clytia hemisphaerica)
GCAACTGAGAAAAACAAAATAATGAGGAAATTTAATTTGTTATTTTTGTT
TTCAGCCACTTCAGCGTACTACTTCACATCACAGGAGCAGACTTTTATAG
ATGCAAGAGAAACATGTCAAGCACTTCCACCGTTCAATGGAGTGCAATTT
GATCTTGTTGTTGTTGACACTACGTTCAGTCGGCCAAATAAACACTAGAT
GTTGTCGAAACAATACAGAGACAGAGACAGCGACAGAGACAGTGACAGAT
ACAGAGACAGTGACAGAGAGATAGAGACTTTTACAGATGCAAGAGAAACA
TGTCAAGAACTTCCACCGATTAAATATCTGAATACAGTACAGAAAATTGA
AAAAAATACACGTGTCAAGAAATCACGTGCCAAAAAAAAGGCAACTGAGA
AAAACAAAATAATGAGGAAATTTAATTTGTTATTTTTGTTTTCAGCCACT
TCAGCGTACTACTTCACATCACAGGAGCAGACTTTTATAGATGCAAGAGA
AACATGTCAAGCACTTCCACCGTTCAATGGAGTGCAATTTGATCTTGTTG
TTGTTGACACTACGTTCAGTCGGCCAAATAAACACTAGATGTTGTCGAAA
CAATACAGAGACAGAGACAGCGACAGAGACAGTGACAGATACAGAGACAG
TGACAGAGAGATAGAGACTTTTACAGATGCAAGAGAAACATGTCAAGAAC
TTCCACCGATTAAATATCTGAATACAGTACAGAAAATTGAAAAAAATACA
CGTGTCAAGAAATCACGTGCCAAAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037410XLOC_037410Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059432-proteinTCONS_00059432-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059432-exon-scaffold_327-1575043694:217557..218400TCONS_00059432-exon-scaffold_327-1575043694:217557..218400Clytia hemisphaericaexon
TCONS_00059432-exon-scaffold_327-1575043694:216766..217470TCONS_00059432-exon-scaffold_327-1575043694:216766..217470Clytia hemisphaericaexon
TCONS_00059432-exon-scaffold_327-1575043694:213165..213277TCONS_00059432-exon-scaffold_327-1575043694:213165..213277Clytia hemisphaericaexon
TCONS_00059432-exon-scaffold_327-1510915933:217557..218400TCONS_00059432-exon-scaffold_327-1510915933:217557..218400Clytia hemisphaericaexon
TCONS_00059432-exon-scaffold_327-1510915933:216766..217470TCONS_00059432-exon-scaffold_327-1510915933:216766..217470Clytia hemisphaericaexon
TCONS_00059432-exon-scaffold_327-1510915933:213165..213277TCONS_00059432-exon-scaffold_327-1510915933:213165..213277Clytia hemisphaericaexon
TCONS_00059432-exon-scaffold_327-1491911889:217557..218400TCONS_00059432-exon-scaffold_327-1491911889:217557..218400Clytia hemisphaericaexon
TCONS_00059432-exon-scaffold_327-1491911889:216766..217470TCONS_00059432-exon-scaffold_327-1491911889:216766..217470Clytia hemisphaericaexon
TCONS_00059432-exon-scaffold_327-1491911889:213165..213277TCONS_00059432-exon-scaffold_327-1491911889:213165..213277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:213165..218400 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16916	0.399596	0.0408331	0.0696277	1.94104	0.898199	6.48257	7.63807	2.06243	3.31561	1.4791	1.35035	3.5687	3.17214	2.55118	2.08429	3.50227	2.67795	2.57349	2.15104	4.3483	3.7503	1.50276	2.83238	4.53676	6.6446	5.62067	3.95515	2.94107	3.51792
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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