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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059429 ID=TCONS_00059429|Name=TCONS_00059429|organism=Clytia hemisphaerica|type=transcript|length=2235bp
ATttattgttaaaatattatgTTTTAGCAAACAAAACGCTAATCAAACCG
TGCAAAGACTGGCTTATAGTTTTCCAGGCTAAAAGAAGCTACAAAATCAA
GGTAGAACATTTGGAATTTCAAagcttttcaaatttaaaacactTCCATT
CCAACGCAGTATTAGAAAGCTTTTCATGGAAGTTGAATACTTTAAACAAT
GGAAAATCATTTATGATTTATTCGAGAGACAAGATGCGATAGAAAACCGA
AGAAGGTCACTAATTAATGGCTCCATCAACCGGATTATGAATCGGCaaga
aattgatttattttatgAGACTGCTGAAAAACTGGTCAATTAATGAAAGA
GATTACTCAAAGACAGCCTGTTTATAACGGGTACACCATTGTCTTGTCAG
GCAGCACTAAGGAAGGTGTTCGAGTTGGAAACCCTTACGAGGTTGATTAC
ATGATAGTTTATGATGAGTTACAATTTGAAACTATCAAGGAATGCCGTTC
AAACCCTGGTTTCCTTGAAGTCGAACTTAAAGGAAATTCCTTGATAAGAT
TTGAGAAATTTACGATTGAGAGACAGTTGAATGCTGGCAAATTGATGTTC
AATTTCTTACGGACGGCTCATGAGATTGTCATTCGGGAATGTTATCGCGA
GAGAGAGCAACATCTTCGGATCAATGGTGTGAAATATGTCAAAGATTACC
AGTTCTTTAAGAAACGAACTCTACCAAAacttgctgaatcagcagaaaca
TTACCCAGTGACAACAGTTTCTACGGTGATGaagatgaaacaaaaaatat
aagtaGGCGGAAAGGTTCTTTGCTCAATAGACCTAATCATTACATTGAAA
GTACCACGGAATACGCGCCAATGAATTACAAAGTAAAGCAAAATTCAAGT
CTAATCAAAGGAAGTGGTGCACGACGAGGTAGACAACCTTTTACATTACA
CGGGCCAATGGGTGAAGCTGGTACTGATATACCTTATAGCGTGAACGAAC
ATGGATATAATCCTGTAgttttatttaataaacgccagAGCAAATGGGAA
GAACCAACATACATGGAGGTTAGTTTACATGGAGGGAACGGTGAACAATA
TGAAGAATTTCCATTAGATGTAGCAGACTACCATGTTCATTCAATACCAC
CAAACTATCACGAACAGAAAGTCCCCAATGCTACTGGAATTCACTCTACA
AACATCCAGAACAATTTAGACAAAACACCACCAAACTATCACGAACAGAA
AGTCCCCAATGCTACTGGAATTCACTCTACAAACATCCAGAACAATTTAG
ACAAAACACCACCAAACTATCATGAACTTAAAGTCCCCAATGCTGCTGGA
ATTCACTCTACAAACATCCAGAACAATTTAGACAAAACAGTCCCCACGAG
AAAGGGCTTGAAACCTGCCTTATTGTTTAGCGTCCGTGGACTGATTAAAA
ACCGTGAGATAGGTGATATTGACATGGTGTTGGCTTTCAAATTGAATGGT
TTCTGGCCAGAGTGTGCCAACCATTGGAAGACGGTACAATTAAACATAAG
TGACACGTTCCGAAATAAGATTCTCGAAGAAGGAGTACTAATCGTACCAA
AAGCACCGAACCAGCAGAAAAGCAGCCTCCGacatttcaagattttcatt
cTCCTTAGCTGAATCACATCTCATGGAACAATTTAGTTGTCAACAGATTT
CAGCTTATCGCATCTTAAAGATCAGCCGTCAAATCCTGTTCCATAAATTC
CAGTTTNGTCTCATAGAACAATTTAGTTGTCAACAGATTTCAGCTTATCG
CATCTTAAAGATCAGCCATCAAATCCTGTTCCATAAATTCAAGTTTGGCT
GCATGGATATTGGACAGTTTATACGTGAAAAATTTGTTacttattacttg
aaaaaaatcGCCTTGGAAGTATTTACCAAGCCAATGAAATTTGCCGACAC
AGTCGTGATTAAAAATACAAGATATTGGTTGGTTTTACTTCTCGAAGAAT
TAATTCGATGTCTAGATGAAGGCTCGATCAAGCATTATTTCACTGGTGAA
AACCTGGTCAATTTTGATGTGTACTTTGAAGACGTGAAGGAATACTGTGT
TAGCTTCGCGAATTTCGAAGACTTCAAGTCCTCGGTACAGCCTCAGTACC
AAGAAGCTTTGGATAAACTTTTCGTTGATCTCGGGCTTGATGTTACTATT
CATTTAAATTTGATCATTAAGTTAGCTTACAAAGG Run BLAST on NCBI protein sequence of TCONS_00059429-protein >TCONS_00059429-protein ID=TCONS_00059429-protein|Name=TCONS_00059429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MKEITQRQPVYNGYTIVLSGSTKEGVRVGNPYEVDYMIVYDELQFETIKE
CRSNPGFLEVELKGNSLIRFEKFTIERQLNAGKLMFNFLRTAHEIVIREC
YREREQHLRINGVKYVKDYQFFKKRTLPKLAESAETLPSDNSFYGDEDET
KNISRRKGSLLNRPNHYIESTTEYAPMNYKVKQNSSLIKGSGARRGRQPF
TLHGPMGEAGTDIPYSVNEHGYNPVVLFNKRQSKWEEPTYMEVSLHGGNG
EQYEEFPLDVADYHVHSIPPNYHEQKVPNATGIHSTNIQNNLDKTPPNYH
EQKVPNATGIHSTNIQNNLDKTPPNYHELKVPNAAGIHSTNIQNNLDKTV
PTRKGLKPALLFSVRGLIKNREIGDIDMVLAFKLNGFWPECANHWKTVQL
NISDTFRNKILEEGVLIVPKAPNQQKSSLRHFKIFILLS Run BLAST on NCBI transcript from alignment at scaffold_327:182474..185598- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059429 ID=TCONS_00059429|Name=TCONS_00059429|organism=Clytia hemisphaerica|type=transcript|length=3125bp|location=Sequence derived from alignment at scaffold_327:182474..185598- (Clytia hemisphaerica)
ATTTATTGTTAAAATATTATGTTTTAGCAAACAAAACGCTAATCAAACCG
TGCAAAGACTGGCTTATAGTTTTCCAGGTAGGATTGACGTCATATGTCTG
AAGACGTTGCATTGATTTTCTATTAGACGCATAATTCGGAGGTTGTCCGT
ACCACTGACCTTTATATACCCTGGACCAAGTTTCTCAATTCCAGCCAAGC
AAAATTTTTGATCAGGGTTTTTTTGAAAAGTGGTACCCTAATGGCGGCAC
TACTCAATAGCGGTGTAAATGCATCGAGAGCGCTAAATATACTTTCCCTC
GAAAACTTTTGATGATGCAGCGCCGTTTGACGTTAACTTTTAACACTGCA
ATGGCTTCTTTACGGGTATCAATTCAAAAAAACTTTCGATCAAAGATGGC
GGATATAGTTTTGTCCAGGGATATTATAAAGGTCAGTGGTCCATGCCTGT
TAAACTCGACCGAAACCATTTGTTGTTTTCAGGGTTACCAGGTGTATTCA
AGGGTGCAGGCGTTCCAAAATTTAAGACAAGACAAATCTGAGATAAACTT
GATATGGACAGGCCGTATCAGTTTGACTGAGCATGTGTATTTTCACTTAA
GTGCTATATATAATCTTGTTTCAAACTCTTTATTGATTTTCAGGCTAAAA
GAAGCTACAAAATCAAGGTAGAACATTTGGAATTTCAAAGCTTTTCAAAT
TTAAAACACTTCCATTCCAACGCAGTATTAGAAAGCTTTTCATGGAAGTT
GAATACTTTAAACAATGGAAAATCATTTATGATTTATTCGAGAGACAAGA
TGCGATAGAAAACCGAAGAAGGTCACTAATTAATGGCTCCATCAACCGGA
TTATGAATCGGCAAGAAATTGATTTATTTTATGAGACTGCTGAAAAACTG
GTCAATTAATGAAAGAGATTACTCAAAGACAGCCTGTTTATAACGGGTAC
ACCATTGTCTTGTCAGGCAGCACTAAGGAAGGTGTTCGAGTTGGAAACCC
TTACGAGGTTGATTACATGATAGTTTATGATGAGTTACAATTTGAAACTA
TCAAGGAATGCCGTTCAAACCCTGGTTTCCTTGAAGTCGAACTTAAAGGA
AATTCCTTGATAAGATTTGAGAAATTTACGATTGAGAGACAGTTGAATGC
TGGCAAATTGATGTTCAATTTCTTACGGACGGCTCATGAGATTGTCATTC
GGGAATGTTATCGCGAGAGAGAGCAACATCTTCGGATCAATGGTGTGAAA
TATGTCAAAGATTACCAGTTCTTTAAGAAACGAACTCTACCAAAACTTGC
TGAATCAGCAGAAACATTACCCAGTGACAACAGTTTCTACGGTGATGAAG
ATGAAACAAAAAATATAAGTAGGCGGAAAGGTTCTTTGCTCAATAGACCT
AATCATTACATTGAAAGTACCACGGAATACGCGCCAATGAATTACAAAGT
AAAGCAAAATTCAAGTCTAATCAAAGGAAGTGGTGCACGACGAGGTAGAC
AACCTTTTACATTACACGGGCCAATGGGTGAAGCTGGTACTGATATACCT
TATAGCGTGAACGAACATGGATATAATCCTGTAGTTTTATTTAATAAACG
CCAGAGCAAATGGGAAGAACCAACATACATGGAGGTTAGTTTACATGGAG
GGAACGGTGAACAATATGAAGAATTTCCATTAGATGTAGCAGACTACCAT
GTTCATTCAATACCACCAAACTATCACGAACAGAAAGTCCCCAATGCTAC
TGGAATTCACTCTACAAACATCCAGAACAATTTAGACAAAACAACACCAA
ACTATCATGAACAGAAAGTCCCCAATGCTGCTGGAATTCACTCTACAAAT
ATCGAGAACAATTTAGACAAAACACCACCAAACTATCATGAACTTAAAGT
CCCCAATGCTGTTGGGATTCACTCTACAAACATCCAGAACAATTTAGACA
AAACAACACCAAACTATCACGAACAGAAAGTCCCCAATGCTACTGGAATT
CACTCTACAAACATCCAGAACAATTTAGACAAAATACCACCAAACTATCA
TGAACTTAAAGTCCCCAATGCTGTTGGGATTCACTCTACAAACATCCAGA
ACAATTTAGACAAAACACCACCAAACTATCACGAACAGAAAGTCCCCAAT
GCTACTGGAATTCACTCTACAAACATCCAGAACAATTTAGACAAAACACC
ACCAAACTATCATGAACTTAAAGTCCCCAATGCTGCTGGAATTCACTCTA
CAAACATCCAGAACAATTTAGACAAAACAGTCCCCACGAGAAAGGGCTTG
AAACCTGCCTTATTGTTTAGCGTCCGTGGACTGATTAAAAACCGTGAGAT
AGGTGATATTGACATGGTGTTGGCTTTCAAATTGAATGGTTTCTGGCCAG
AGTGTGCCAACCATTGGAAGACGGTACAATTAAACATAAGTGACACGTTC
CGAAATAAGATTCTCGAAGAAGGAGTACTAATCGTACCAAAAGCACCGAA
CCAGCAGAAAAGCAGCCTCCGACATTTCAAGATTTTCATTCTCCTTAGCT
GAATCACATCTCATGGAACAATTTAGTTGTCAACAGATTTCAGCTTATCG
CATCTTAAAGATCAGCCGTCAAATCCTGTTCCATAAATTCCAGTTTNGTC
TCATAGAACAATTTAGTTGTCAACAGATTTCAGCTTATCGCATCTTAAAG
ATCAGCCATCAAATCCTGTTCCATAAATTCAAGTTTGGCTGCATGGATAT
TGGACAGTTTATACGTGAAAAATTTGTTACTTATTACTTGAAAAAAATCG
CCTTGGAAGTATTTACCAAGCCAATGAAATTTGCCGACACAGTCGTGATT
AAAAATACAAGATATTGGTTGGTTTTACTTCTCGAAGAATTAATTCGATG
TCTAGATGAAGGCTCGATCAAGCATTATTTCACTGGTGAAAACCTGGTCA
ATTTTGATGTGTACTTTGAAGACGTGAAGGAATACTGTGTTAGCTTCGCG
AATTTCGAAGACTTCAAGTCCTCGGTACAGCCTCAGTACCAAGAAGCTTT
GGATAAACTTTTCGTTGATCTCGGGCTTGATGTTACTATTCATTTAAATT
TGATCATTAAGTTAGCTTACAAAGG Coding sequence (CDS) from alignment at scaffold_327:182474..185598- >TCONS_00059429 ID=TCONS_00059429|Name=TCONS_00059429|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_327:182474..185598- (Clytia hemisphaerica)
ATCCAGAACAATTTAGACAAAACACCACCAAACTATCACGAACAGAAAGT
CCCCAATGCTACTGGAATTCACTCTACAAACATCCAGAACAATTTAGACA
AAACACCACCAAACTATCATGAACTTAAAGTCCCCAATGCTGCTGGAATT
CACTCTACAAACATCCAGAACAATTTAGACAAAACAGTCCCCACGAGAAA
GGGCTTGAAACCTGCCTTATTGTTTAGCGTCCGTGGACTGATTAAAAACC
GTGAGATAGGTGATATTGACATGGTGTTGGCTTTCAAATTGAATGGTTTC
TGGCCAGAGTGTGCCAACCATTGGAAGACGGTACAATTAAACATAAGTGA
CACGTTCCGAAATAAGATTCTCGAAGAAGGAGTACTAATCGTACCAAAAG
CACCGAACCAGCAGAAAAGCAGCCTCCGACATTTCAAGATTTTCATTCTC
CTTAGCTGAATGAAAGAGATTACTCAAAGACAGCCTGTTTATAACGGGTA
CACCATTGTCTTGTCAGGCAGCACTAAGGAAGGTGTTCGAGTTGGAAACC
CTTACGAGGTTGATTACATGATAGTTTATGATGAGTTACAATTTGAAACT
ATCAAGGAATGCCGTTCAAACCCTGGTTTCCTTGAAGTCGAACTTAAAGG
AAATTCCTTGATAAGATTTGAGAAATTTACGATTGAGAGACAGTTGAATG
CTGGCAAATTGATGTTCAATTTCTTACGGACGGCTCATGAGATTGTCATT
CGGGAATGTTATCGCGAGAGAGAGCAACATCTTCGGATCAATGGTGTGAA
ATATGTCAAAGATTACCAGTTCTTTAAGAAACGAACTCTACCAAAACTTG
CTGAATCAGCAGAAACATTACCCAGTGACAACAGTTTCTACGGTGATGAA
GATGAAACAAAAAATATAAGTAGGCGGAAAGGTTCTTTGCTCAATAGACC
TAATCATTACATTGAAAGTACCACGGAATACGCGCCAATGAATTACAAAG
TAAAGCAAAATTCAAGTCTAATCAAAGGAAGTGGTGCACGACGAGGTAGA
CAACCTTTTACATTACACGGGCCAATGGGTGAAGCTGGTACTGATATACC
TTATAGCGTGAACGAACATGGATATAATCCTGTAGTTTTATTTAATAAAC
GCCAGAGCAAATGGGAAGAACCAACATACATGGAGGTTAGTTTACATGGA
GGGAACGGTGAACAATATGAAGAATTTCCATTAGATGTAGCAGACTACCA
TGTTCATTCAATACCACCAAACTATCACGAACAGAAAGTCCCCAATGCTA
CTGGAATTCACTCTACAAACATCCAGAACAATTTAGACAAAACACCACCA
AACTATCACGAACAGAAAGTCCCCAATGCTACTGGAATTCACTCTACAAA
CATCCAGAACAATTTAGACAAAACACCACCAAACTATCATGAACTTAAAG
TCCCCAATGCTGCTGGAATTCACTCTACAAACATCCAGAACAATTTAGAC
AAAACAGTCCCCACGAGAAAGGGCTTGAAACCTGCCTTATTGTTTAGCGT
CCGTGGACTGATTAAAAACCGTGAGATAGGTGATATTGACATGGTGTTGG
CTTTCAAATTGAATGGTTTCTGGCCAGAGTGTGCCAACCATTGGAAGACG
GTACAATTAAACATAAGTGACACGTTCCGAAATAAGATTCTCGAAGAAGG
AGTACTAATCGTACCAAAAGCACCGAACCAGCAGAAAAGCAGCCTCCGAC
ATTTCAAGATTTTCATTCTCCTTAGCTGAATGAAAGAGATTACTCAAAGA
CAGCCTGTTTATAACGGGTACACCATTGTCTTGTCAGGCAGCACTAAGGA
AGGTGTTCGAGTTGGAAACCCTTACGAGGTTGATTACATGATAGTTTATG
ATGAGTTACAATTTGAAACTATCAAGGAATGCCGTTCAAACCCTGGTTTC
CTTGAAGTCGAACTTAAAGGAAATTCCTTGATAAGATTTGAGAAATTTAC
GATTGAGAGACAGTTGAATGCTGGCAAATTGATGTTCAATTTCTTACGGA
CGGCTCATGAGATTGTCATTCGGGAATGTTATCGCGAGAGAGAGCAACAT
CTTCGGATCAATGGTGTGAAATATGTCAAAGATTACCAGTTCTTTAAGAA
ACGAACTCTACCAAAACTTGCTGAATCAGCAGAAACATTACCCAGTGACA
ACAGTTTCTACGGTGATGAAGATGAAACAAAAAATATAAGTAGGCGGAAA
GGTTCTTTGCTCAATAGACCTAATCATTACATTGAAAGTACCACGGAATA
CGCGCCAATGAATTACAAAGTAAAGCAAAATTCAAGTCTAATCAAAGGAA
GTGGTGCACGACGAGGTAGACAACCTTTTACATTACACGGGCCAATGGGT
GAAGCTGGTACTGATATACCTTATAGCGTGAACGAACATGGATATAATCC
TGTAGTTTTATTTAATAAACGCCAGAGCAAATGGGAAGAACCAACATACA
TGGAGGTTAGTTTACATGGAGGGAACGGTGAACAATATGAAGAATTTCCA
TTAGATGTAGCAGACTACCATGTTCATTCAATACCACCAAACTATCACGA
ACAGAAAGTCCCCAATGCTACTGGAATTCACTCTACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059429-exon-scaffold_327-1575043694:185522..185598 | TCONS_00059429-exon-scaffold_327-1575043694:185522..185598 | Clytia hemisphaerica | exon |
| TCONS_00059429-exon-scaffold_327-1575043694:183830..184955 | TCONS_00059429-exon-scaffold_327-1575043694:183830..184955 | Clytia hemisphaerica | exon |
| TCONS_00059429-exon-scaffold_327-1575043694:182474..183505 | TCONS_00059429-exon-scaffold_327-1575043694:182474..183505 | Clytia hemisphaerica | exon |
| TCONS_00059429-exon-scaffold_327-1510915933:185522..185598 | TCONS_00059429-exon-scaffold_327-1510915933:185522..185598 | Clytia hemisphaerica | exon |
| TCONS_00059429-exon-scaffold_327-1510915933:183830..184955 | TCONS_00059429-exon-scaffold_327-1510915933:183830..184955 | Clytia hemisphaerica | exon |
| TCONS_00059429-exon-scaffold_327-1510915933:182474..183505 | TCONS_00059429-exon-scaffold_327-1510915933:182474..183505 | Clytia hemisphaerica | exon |
| TCONS_00059429-exon-scaffold_327-1491911889:185522..185598 | TCONS_00059429-exon-scaffold_327-1491911889:185522..185598 | Clytia hemisphaerica | exon |
| TCONS_00059429-exon-scaffold_327-1491911889:183830..184955 | TCONS_00059429-exon-scaffold_327-1491911889:183830..184955 | Clytia hemisphaerica | exon |
| TCONS_00059429-exon-scaffold_327-1491911889:182474..183505 | TCONS_00059429-exon-scaffold_327-1491911889:182474..183505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:182474..185598 - |
Blast
The following BLAST results are available for this feature:
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