TCONS_00059410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059410
Unique NameTCONS_00059410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059410 ID=TCONS_00059410|Name=TCONS_00059410|organism=Clytia hemisphaerica|type=transcript|length=1428bp
ataagaaattgaaATAATAGATTTAGTTTCcatgaaatagaaaataataa
gattttgaaataaaCTTTTCCAAATAAAGAACATTTCCATACCTACCAAC
ATAATGAAGAACGTTCCAACTATTATCATTCACCAGTGAAAAATCTTGCG
GATATTCCATCAAGTGAATGAAGaagtaaaatttaattttaagacGACTG
AATTTAGAAGTGTGATGGAAAATACTTGGGATGATATTTTGTTGATCAAA
CATTTCCAAATAACGAACATTTCCATACCTACCAACATAATGAAGAACGT
TCCAACCATTATCATTCACCAGTGAAAAATCTTGCGGATATTCCATCAAG
TGAATGAAGaagtaaaatttaattttaagacGACTGAATTTAAAAGTGTG
ATGGAAAATACTTGGGATGATATTTTGTTGATCAAACATTTCCAAATAAC
GAACATTTCCATACCTACCAACATAATGAAGAACGTTCCAACCATTATCA
TTCACCAGTGAAAAATCTTGCGGATATTCCATCAAGTGAACGAAGAAGTA
AAATATAGATTTAGAACTTTTATCTCCATTTCGAGTTGACCTCTATGTAA
CGAGTTGATTACGTTTACGATTTCCATCAAGTGAACGAAGaagtaaaata
taattttaagaCGAGTGAATCTAAAAGTGTGATGGAAAATACTTGGGATG
ATTTTGTTGATCAAACATTTCCAAATAACGAACATTTCCATACCTACCAA
CATAATGAAGAATGTTCCAAACATTATCATTCACCAGTGAAAAATCTTGC
GGATATTCCATCAAGTGAATGAAGaagtaaaatataattttaagaCGACT
GAATCTAAAAATGTGATGGAAAATACTATCGATGATTTTGTTGATCAAAC
ATTTCCAAATAACGAACATTTCCAGACATACGAACATAATGAAGAACGTT
CCAACCATTATCATTCACCAGTGAAAAATCTTGCGGATATTCCATCAAGT
GAATGAAGaagtaaaatataattttaagaCGAGTGAATCTAAAAATGTGA
TGGAAAAAACTTGGgatgatatttttttgatcAAACATTTCCAAATAACG
AACATTTCCATACCTACCAACATAATGAAGAATGTTCCAACTATTATCAT
TCACCAGTGAAAAATCTTGCGGATATTCCATCAAGTGAATGAAGaagtaa
aatataattttatgaCGAGTGAATCTAAAAGTGTGATGGAAAATACTTGG
GATGATTTTGTTGATCAAACATTTCCAAATAACGAACATTTCCATACCTA
CCAACATAATGAAGAATGTTCCAACCATTATCATTCACCAGTGAAAAATC
TTGCGGATATTCCATCAAGTGAACGAAGaagtaaaatataattttatgaC
AAGTGAATCTAAAAATGTCATAGAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_327:210196..211813+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059410 ID=TCONS_00059410|Name=TCONS_00059410|organism=Clytia hemisphaerica|type=transcript|length=1618bp|location=Sequence derived from alignment at scaffold_327:210196..211813+ (Clytia hemisphaerica)
ataagaaattgaaATAATAGATTTAGTTTCcatgaaatagaaaataataa
gattttgaaataaaCTTTTCCAAATAAAGAACATTTCCATACCTACCAAC
ATAATGAAGAACGTTCCAACTATTATCATTCACCAGTGAAAAATCTTGCG
GATATTCCATCAAGTGAATGAAGaagtaaaatttaattttaagacGACTG
AATTTAGAAGTGTGATGGAAAATACTTGGGATGATATTTTGTTGATCAAA
CATTTCCAAATAACGAACATTTCCATACCTACCAACATAATGAAGAACGT
TCCAACCATTATCATTCACCAGTGAAAAATCTTGCGGATATTCCATCAAG
TGAATGAAGaagtaaaatttaattttaagacGACTGAATTTAAAAGTGTG
ATGGAAAATACTTGGGATGATATTTTGTTGATCAAACATTTCCAAATAAC
GAACATTTCCATACCTACCAACATAATGAAGAACGTTCCAACCATTATCA
TTCACCAGTGAAAAATCTTGCGGATATTCCATCAAGTGAACGAAGAAGTA
AAATATAGATTTAGAACTTTTATCTCCATTTCGAGTTGACCTCTATGTAA
CGAGTTGATTACGTTTACGATTTCCATCAAGTGAACGAAGaagtaaaata
taattttaagaCGAGTGAATCTAAAAGTGTGATGGAAAATACTTGGGATG
ATTTTGTTGATCAAACATTTCCAAATAACGAACATTTCCATACCTACCAA
CATAATGAAGAATGTTCCAAACATTATCATTCACCAGTGAAAAATCTTGC
GGATATTCCATCAAGTGAATGAAGaagtaaaatataattttaagaCGACT
GAATCTAAAAATGTGATGGAAAATACTATCGATGATTTTGTTGATCAAAC
ATTTCCAAATAACGAACATTTCCAGACATACGAACATAATGAAGAACTTC
CAACCATTATCATTCACCAGTGAACAATCTTGCAGATATTCCATCAAGTG
AATGAAGaagtaaaatataattttaagaCGAGTGAATCTAAAAATGTGAT
GGAAATTACTTGGGATGATATTTTGTTGATCAAACATTTCCAAATAACGA
ACATTTCCTTTCCATACCTACCAACATAATGAAGAACGTTCCAACCATTA
TCATTCACCAGTGAAAAATCTTGCGGATATTCCATCAAGTGAATGAAGaa
gtaaaatataattttaagaCGAGTGAATCTAAAAATGTGATGGAAAAAAC
TTGGgatgatatttttttgatcAAACATTTCCAAATAACGAACATTTCCA
TACCTACCAACATAATGAAGAATGTTCCAACTATTATCATTCACCAGTGA
AAAATCTTGCGGATATTCCATCAAGTGAATGAAGaagtaaaatataattt
tatgaCGAGTGAATCTAAAAGTGTGATGGAAAATACTTGGGATGATTTTG
TTGATCAAACATTTCCAAATAACGAACATTTCCATACCTACCAACATAAT
GAAGAATGTTCCAACCATTATCATTCACCAGTGAAAAATCTTGCGGATAT
TCCATCAAGTGAACGAAGaagtaaaatataattttatgaCAAGTGAATCT
AAAAATGTCATAGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037398XLOC_037398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059410-exon-scaffold_327-1491911889:210196..211130TCONS_00059410-exon-scaffold_327-1491911889:210196..211130Clytia hemisphaericaexon
TCONS_00059410-exon-scaffold_327-1510915933:210196..211130TCONS_00059410-exon-scaffold_327-1510915933:210196..211130Clytia hemisphaericaexon
TCONS_00059410-exon-scaffold_327-1575043694:210196..211130TCONS_00059410-exon-scaffold_327-1575043694:210196..211130Clytia hemisphaericaexon
TCONS_00059410-exon-scaffold_327-1491911889:211321..211813TCONS_00059410-exon-scaffold_327-1491911889:211321..211813Clytia hemisphaericaexon
TCONS_00059410-exon-scaffold_327-1510915933:211321..211813TCONS_00059410-exon-scaffold_327-1510915933:211321..211813Clytia hemisphaericaexon
TCONS_00059410-exon-scaffold_327-1575043694:211321..211813TCONS_00059410-exon-scaffold_327-1575043694:211321..211813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:210196..211813 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103283	0.302152	0.116942	0.0322394	1.16586	0.899422	2.73506	3.3905	0.217587	0.394922	0.523198	0.309537	0.583868	0.32101	0.175943	0.409096	0.201303	0.516556	0.548961	0.229779	1.14839	0.730623	0.23359	0.215326	1.38613	2.5099	1.62865	1.13232	0.458545	0.642379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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