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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059406 ID=TCONS_00059406|Name=TCONS_00059406|organism=Clytia hemisphaerica|type=transcript|length=1210bp
GATAAAACGAAACGTTCCAAACAATCCAACAATGTCAATATTGTTACACA
ACAACAGACACCAGAATGGACAGATGCAGAATTACAACAAAAACTTATCG
ACATTGCTGAATCATCATCATCGAGTTCCCACCCAACTAAAGCATTGGAA
TTTCCAAGTCACTTGACAGCCAAACAACGAGCATTAGTACACGAAAAAGC
TGAAGAGCTCGGCTTAAGTCATCAAAGTATCGGTGAGGGCCAACAAAGAC
GAATCGTAGTCgataagaagaaaaagaaagaaactgtGGATGTTGTGAGC
AGTGTTGCCCAACATGGAGAACTATCTGAAGCCACGTGTCTAACATGCTC
AGCACGCATGCCTAAAAGCAACCTACAACTTCATTCAATCAGATGTTTCA
CGAAAGCAGCAACTGAAAAGACCGTTCAAGAGAATGGGACCACTACAAGT
GGAGCTCGTCCTAAAATGTCAAGTAAGAGTAacgcaaagaaaaagaaaag
caagACTAACGAGAACACAAAAAGTAAAGGTGGGCCGGCAGACCCTGATG
AAGATATTGATAGTCTGCTGGAAGAGTTCACCAAAATGAACAATTCATGT
GGTTTTGGCCAATGCAAAATAAGCATCAAAACTCTAGGCCAGAAATGCAC
TTTCTGTTCCAAGATGTTTTGTTTGACACATCATATGGCGGAGATTCACG
GTTGTGGTCATGATATACGCATGCGCGCTAGACAAGATATTGCAAAGTAT
GGCAGCGCAAAGCCTACACCCATGAACAGGACAAAGAAAGTTCAAGTGCA
AAAGAAGTTAGATAAGAAATTGGATGAGCTGCAAGGGGACAGAAAAAGGA
AAACTAAGAAGAAATGAAATCCTTTGCAGTTTTGTTGGGTTCATTTTGTT
AACATCCCTGGCTTTTGATTGGTTTTGAGAAAGGAATGAAAATTTTGGTA
AGAAGGTTCCTTATAGAATCATGATTCCAAGAAAGTATTCATAATTCTTG
TCATGGTTTTTGGATGGCTCTACAAGGTTCTTGTTGGTATGatcgtgttt
ttatttttctagtaTATTTTCTAGAACATTTTATTGGATATTTCATTGGA
CACATGCAAGCCAACTTTAATGGCAACCTAGTGGAAAGCCAATCAAAAAC
GGCTAGTTTGCATCTTGCGTTTCTCTAAACCAACCAGGGCAAGAGaagaa
tatatatttt Run BLAST on NCBI protein sequence of TCONS_00059406-protein >TCONS_00059406-protein ID=TCONS_00059406-protein|Name=TCONS_00059406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
DKTKRSKQSNNVNIVTQQQTPEWTDAELQQKLIDIAESSSSSSHPTKALE
FPSHLTAKQRALVHEKAEELGLSHQSIGEGQQRRIVVDKKKKKETVDVVS
SVAQHGELSEATCLTCSARMPKSNLQLHSIRCFTKAATEKTVQENGTTTS
GARPKMSSKSNAKKKKSKTNENTKSKGGPADPDEDIDSLLEEFTKMNNSC
GFGQCKISIKTLGQKCTFCSKMFCLTHHMAEIHGCGHDIRMRARQDIAKY
GSAKPTPMNRTKKVQVQKKLDKKLDELQGDRKRKTKKK Run BLAST on NCBI transcript from alignment at scaffold_327:194123..196050+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059406 ID=TCONS_00059406|Name=TCONS_00059406|organism=Clytia hemisphaerica|type=transcript|length=1928bp|location=Sequence derived from alignment at scaffold_327:194123..196050+ (Clytia hemisphaerica)
GATAAAACGAAACGTTCCAAACAATCCAACAATGTCAATATTGTTACACA
ACAACAGACACCAGAATGGACAGATGCAGAATTACAACAAAAACTTATCG
ACATTGCTGAATCATCATCATCGAGTTCCCACCCAACTAAAGCATTGGAA
TTTCCAAGTCACTTGACAGCCAAACAACGAGCATTAGTACACGAAAAAGC
TGAAGAGCTCGGCTTAAGTCATCAAAGTATCGGTGAGGGCCAACAAAGAC
GAATCGTAGTCgataagaagaaaaagaaagaaactgtGGATGTTGTGAGC
AGTGTTGGTAAGAGACTAATCAATCTACACAAGCACTTTTACCGTTATTG
AtgggcaaaaaaaaatttaaagtttcaaaATGAATAAGCTTTTAGGCTTT
CTGTTCTTCATATTTTTGTTCTTTCCCCAAAAAAGGGGAAGGCATTcctt
ttcaaagtcaaataaaaTTGGGTGTAGCCAGGATTTTTGAAACTCAGCAT
TGGTGAGCTGTTAGTAAAACAGGTCCCATGTTATCGATGTATAGTTTGGC
CTCAAACTGTACTTGATTTAATCGCTAGTTTTTGACTAATGTGATTTCCT
CTCTTCTTTTCAGCCCAACATGGAGAACTATCTGAAGCCACGTGTCTAAC
ATGCTCAGCACGCATGCCTAAAAGCAACCTACAACTTCATTCAATCAGAT
GTTTCACGAAAGCAGCAACTGAAAAGACCGTTCAAGAGAATGGGACCACT
ACAAGTGGAGCTCGTCCTAAAATGTCAAGTAAGAGTAacgcaaagaaaaa
gaaaagcaagACTAACGAGAACACAAAAAGTAAAGGTGGGCCGGCAGACC
CTGATGAAGATATTGATAGTCTGCTGGAAGAGTTCACCAAAATGAACAAT
TCATGTGGTTTTGGCCAATGCAAAATAAGCATCAAAACTCTAGGCCAGAA
ATGCACTTTCTGTTCCAAGATGTTTTGTTTGACACATCATATGGCGGAGA
TTCACGGTTGTGGTCATGATATACGCATGCGCGCTAGACAAGATATTGCA
AAGTATGGCAGCGCAAAGCCTACACCCATGAACAGGACAAAGAAAGTTCA
AGTGCAAAAGAAGTTAGATAAGAAATTGGATGAGCTGCAAGGGGACAGAA
AAAGGAAAACTAAGAAGAAATGAAATCCTTTGCAGTTTTGTTGGGTTCAT
TTTGTTAACATCCCTGGCTTTTGATTGGTTTTGAGAAAGgtgagttttta
ttttattaaagtaAACTGAACCCCGTTAGTCTCATGTATTAAGTTTTGAG
CCACCTTTTTGTATACACCCCCTTTCTTTCTTTCGTTCTAGTTATTTTCA
AGTATTGTTAAAATAGCTGTTCCCTCTCATTAGCCATTTTTATGTTGCAA
ACGGAAACTAAATAGTTTTATCTCGCGAAAAACACGAAGACCCAAATAAG
AAATCTGATAACAAAAGCAGCCTAAGAGCCTTGATGAGAAAAGTCTGTTT
GATTACATTTCTCCTCTATTCCTAGGAATGAAAATTTTGGTAAGAAGNTC
TGTTCGATTACATTTCTCCTCTATTCCTAGGAATGAAAATTTTGGTAAGA
AGGTTCCTTATAGAATCATGATTCCAAGAAAGTATTCATAATTCTTGTCA
TGGTTTTTGGATGGCTCTACAAGGTTCTTGTTGGTATGatcgtgttttta
tttttctagtaTATTTTATAGAACATTTTATTGGATATNACAAGGTTCTT
GTTGGTATGatcgtgtttttatttttctagtaTATTTTCTAGAACATTTT
ATTGGATATTTCATTGGACACATGCAAGCCAACTTTAATGGCAACCTAGT
GGAAAGCCAATCAAAAACGGCTAGTTTGCATCTTGCGTTTCTCTAAACCA
ACCAGGGCAAGAGaagaatatatatttt Coding sequence (CDS) from alignment at scaffold_327:194123..196050+ >TCONS_00059406 ID=TCONS_00059406|Name=TCONS_00059406|organism=Clytia hemisphaerica|type=CDS|length=1734bp|location=Sequence derived from alignment at scaffold_327:194123..196050+ (Clytia hemisphaerica)
GATAAAACGAAACGTTCCAAACAATCCAACAATGTCAATATTGTTACACA
ACAACAGACACCAGAATGGACAGATGCAGAATTACAACAAAAACTTATCG
ACATTGCTGAATCATCATCATCGAGTTCCCACCCAACTAAAGCATTGGAA
TTTCCAAGTCACTTGACAGCCAAACAACGAGCATTAGTACACGAAAAAGC
TGAAGAGCTCGGCTTAAGTCATCAAAGTATCGGTGAGGGCCAACAAAGAC
GAATCGTAGTCgataagaagaaaaagaaagaaactgtGGATGTTGTGAGC
AGTGTTGCCCAACATGGAGAACTATCTGAAGCCACGTGTCTAACATGCTC
AGCACGCATGCCTAAAAGCAACCTACAACTTCATTCAATCAGATGTTTCA
CGAAAGCAGCAACTGAAAAGACCGTTCAAGAGAATGGGACCACTACAAGT
GGAGCTCGTCCTAAAATGTCAAGTAAGAGTAacgcaaagaaaaagaaaag
caagACTAACGAGAACACAAAAAGTAAAGGTGGGCCGGCAGACCCTGATG
AAGATATTGATAGTCTGCTGGAAGAGTTCACCAAAATGAACAATTCATGT
GGTTTTGGCCAATGCAAAATAAGCATCAAAACTCTAGGCCAGAAATGCAC
TTTCTGTTCCAAGATGTTTTGTTTGACACATCATATGGCGGAGATTCACG
GTTGTGGTCATGATATACGCATGCGCGCTAGACAAGATATTGCAAAGTAT
GGCAGCGCAAAGCCTACACCCATGAACAGGACAAAGAAAGTTCAAGTGCA
AAAGAAGTTAGATAAGAAATTGGATGAGCTGCAAGGGGACAGAAAAAGGA
AAACTAAGAAGAAATGAGATAAAACGAAACGTTCCAAACAATCCAACAAT
GTCAATATTGTTACACAACAACAGACACCAGAATGGACAGATGCAGAATT
ACAACAAAAACTTATCGACATTGCTGAATCATCATCATCGAGTTCCCACC
CAACTAAAGCATTGGAATTTCCAAGTCACTTGACAGCCAAACAACGAGCA
TTAGTACACGAAAAAGCTGAAGAGCTCGGCTTAAGTCATCAAAGTATCGG
TGAGGGCCAACAAAGACGAATCGTAGTCgataagaagaaaaagaaagaaa
ctgtGGATGTTGTGAGCAGTGTTGCCCAACATGGAGAACTATCTGAAGCC
ACGTGTCTAACATGCTCAGCACGCATGCCTAAAAGCAACCTACAACTTCA
TTCAATCAGATGTTTCACGAAAGCAGCAACTGAAAAGACCGTTCAAGAGA
ATGGGACCACTACAAGTGGAGCTCGTCCTAAAATGTCAAGTAAGAGTAac
gcaaagaaaaagaaaagcaagACTAACGAGAACACAAAAAGTAAAGGTGG
GCCGGCAGACCCTGATGAAGATATTGATAGTCTGCTGGAAGAGTTCACCA
AAATGAACAATTCATGTGGTTTTGGCCAATGCAAAATAAGCATCAAAACT
CTAGGCCAGAAATGCACTTTCTGTTCCAAGATGTTTTGTTTGACACATCA
TATGGCGGAGATTCACGGTTGTGGTCATGATATACGCATGCGCGCTAGAC
AAGATATTGCAAAGTATGGCAGCGCAAAGCCTACACCCATGAACAGGACA
AAGAAAGTTCAAGTGCAAAAGAAGTTAGATAAGAAATTGGATGAGCTGCA
AGGGGACAGAAAAAGGAAAACTAAGAAGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059406-exon-scaffold_327-1491911889:194123..194429 | TCONS_00059406-exon-scaffold_327-1491911889:194123..194429 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1510915933:194123..194429 | TCONS_00059406-exon-scaffold_327-1510915933:194123..194429 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1575043694:194123..194429 | TCONS_00059406-exon-scaffold_327-1575043694:194123..194429 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1491911889:194736..195361 | TCONS_00059406-exon-scaffold_327-1491911889:194736..195361 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1510915933:194736..195361 | TCONS_00059406-exon-scaffold_327-1510915933:194736..195361 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1575043694:194736..195361 | TCONS_00059406-exon-scaffold_327-1575043694:194736..195361 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1491911889:195703..195795 | TCONS_00059406-exon-scaffold_327-1491911889:195703..195795 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1510915933:195703..195795 | TCONS_00059406-exon-scaffold_327-1510915933:195703..195795 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1575043694:195703..195795 | TCONS_00059406-exon-scaffold_327-1575043694:195703..195795 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1491911889:195867..196050 | TCONS_00059406-exon-scaffold_327-1491911889:195867..196050 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1510915933:195867..196050 | TCONS_00059406-exon-scaffold_327-1510915933:195867..196050 | Clytia hemisphaerica | exon |
| TCONS_00059406-exon-scaffold_327-1575043694:195867..196050 | TCONS_00059406-exon-scaffold_327-1575043694:195867..196050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:194123..196050 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00059406 vs. Swiss-Prot (Human)
Match: SMBP2 (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 7.229e-17 Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 547 DEDIDSLLEEFTKMNNSCGFGQCKISIKTLGQKCTFCSKMFCLTHHMAEIHGCGHDIRMRARQDIAKYG 753
+ED ++L+ K +N+CGF +C + TLGQ C CS+ +CL+HH+ EIHGCG R ARQ I++ G
Sbjct: 880 EEDFEALVSAAVKADNTCGFAKCTAGVTTLGQFCQLCSRRYCLSHHLPEIHGCGERARAHARQRISREG 948
The following BLAST results are available for this feature:
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