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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059405 ID=TCONS_00059405|Name=TCONS_00059405|organism=Clytia hemisphaerica|type=transcript|length=1944bpRun BLAST on NCBI transcript from alignment at scaffold_327:171202..181355+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059405 ID=TCONS_00059405|Name=TCONS_00059405|organism=Clytia hemisphaerica|type=transcript|length=10154bp|location=Sequence derived from alignment at scaffold_327:171202..181355+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00059405 vs. Swiss-Prot (Human)
Match: SMBP2 (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3) HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0 Identity = 305/646 (47.21%), Postives = 435/646 (67.34%), Query Frame = 1
Query: 37 TIDQFVAKQRELLKLEQSEEVCQRQQIYENKSIKELVKRGVCVNRLKVDHHRTGLFGKHVIVFNL----NTSDLHSHKLSSGDIVGLYPNKGDNGDLIASGLVASSRPPNISVAFNEAFDLLAT----SLYRLMKLTNDVTYRRLNSAINNMEKSNKETNP-------FFAALFPCKTVEDSYINPTVKITQHFNQNLDQSQKDAVYFAVSTSLPLSVIHXXXXXXXXXXVVEIIQQLIQKFHKKILVCAPSNIAVDNLVERLAKLKTKVVRLGHPARIIEDVQRYSLDAIIDSHDSSDVIRELKAEITTKCAAKSKGGSKQK----WDEVKVLRKDLAHREQNLMKSILVDADVILSTTTSASKEGPLKLLEDDHFDLLIIDEAAQAMEISCWIPMLKVKRCILAGDHLQLPPTIISEKAAREGLEVTLLERVVHGLGQNAVQMLTTQYRMNDLVMRWPSEELYENKLVAADMVANHLLCDLEGVTKTENTSNPLVFVDTAGCNMYELEDQEEDSKGNTWEVDIVYEHIVQLVEDGVNMRQIGVITPYNLQVDMIRKKVQPKYPSIEVNSVDGFQGREKEAILISLVRSNQEGKVGFLKEDRRINVAITRARRHLFVVGDTSTISRHPFLESFSNFMFEKAVVRS 1917
++ FV KQ +LL+LE+ EV +R+ EN S+KEL RGVC+ +L+V RTGL+G+ ++ F + + L S+ +SGDIVGLY + + G +A+G++ +++VAF+E+ D + + YRL+KL NDVTYRRL A+ ++K + + P F P E I+P FN LD SQK+AV FA+S L++IHGPPGTGKTTTVVEII Q +++ K+L CAPSNIAVDNLVERLA K +++RLGHPAR++E +Q++SLDA++ DS+ ++ +++ +I K K++ +E+K+LRK+L RE+ M L A+V+L+T T AS +GPLKLL + +FD+++IDE AQA+E SCWIP+LK ++CILAGDH QLPPT +S KAA GL ++L+ER+ G V+ LT QYRM+ +MRW S+ +Y +L A VA HLL DL GV TE T PL+ VDTAGC ++ELE+++E SKGN EV +V HI LV+ GV R I V++PYNLQVD++R+ + ++P +E+ SVDGFQGREKEA+++S VRSN++G+VGFL EDRRINVA+TRARRH+ V+ D+ T++ H FL++ + + VR+
Sbjct: 5 AVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLY-DAANEGSQLATGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYH--SGPASSLIEVLFGRSAPSPASE---IHPLT----FFNTCLDTSQKEAVLFALSQK-ELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRT 638 The following BLAST results are available for this feature:
BLAST of TCONS_00059405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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