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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059400 ID=TCONS_00059400|Name=TCONS_00059400|organism=Clytia hemisphaerica|type=transcript|length=4840bpRun BLAST on NCBI transcript from alignment at scaffold_327:99520..153360+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059400 ID=TCONS_00059400|Name=TCONS_00059400|organism=Clytia hemisphaerica|type=transcript|length=53841bp|location=Sequence derived from alignment at scaffold_327:99520..153360+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00059400 vs. Swiss-Prot (Human)
Match: RHG39 (Rho GTPase-activating protein 39 OS=Homo sapiens GN=ARHGAP39 PE=1 SV=2) HSP 1 Score: 318.546 bits (815), Expect = 7.234e-90 Identity = 151/297 (50.84%), Postives = 210/297 (70.71%), Query Frame = 2
Query: 1991 KTPSNAGEIPKEVKTSLNTHRKGVFRRRMSIHSMLSWSKTPIKKPMVMTRDKQQRKDAVEVFKIILQCMGDKSSRKSFESLAVEVTTRGWQTTHLRDEIYVQLCKQTTGNDKLKSLRYGWELMTACLTIFPPSNKFHGYLEGYIYKYLD-TEDLSPIAIEAQVDKYAKHCYKQLERICEMGAKRGLKGPTTDEIQSAIKRVFNPSMFGNTLEDIMEMQSQRFPDNRLPWXXXXXXXXXXXXNGLQTEGIFRVPGDIDSVNALKLLIDKWEGTKNNVKDPHTPASLLKLWFRDLYEPL 2878
+ PS+ +I N H +G+FRR++SI +ML+WS IKKPM++T D+ +K+A E+FK+I MGD+ ++ +A+EV T+GW LRDE+Y+QLC+QTT N +L+SL GWELM CL FPP+ KFH YLEGYIY+++D D +AI YAK+CY +L++ GAK+GLK P +EI+ A VF+PSMFG+ L+++M MQ +R+P+ +LPW+ T L++ +L LNG QTEGIFRVPGDID VNALKL +D+W+ ++DPH PASLLKLW+R+L EPL
Sbjct: 686 RKPSSETDIENWASKHFNKHTQGLFRRKVSIANMLAWSSESIKKPMIVTSDRHVKKEACELFKLIQMYMGDRRAKADPLHVALEVATKGWSVQGLRDELYIQLCRQTTENFRLESLARGWELMAICLAFFPPTPKFHSYLEGYIYRHMDPVNDTKGVAI----STYAKYCYHKLQKAALTGAKKGLKKPNVEEIRHAKNAVFSPSMFGSALQEVMGMQRERYPERQLPWVQTRLSEEVLALNGDQTEGIFRVPGDIDEVNALKLQVDQWK-VPTGLEDPHVPASLLKLWYRELEEPL 977 HSP 2 Score: 174.866 bits (442), Expect = 5.645e-44 Identity = 82/126 (65.08%), Postives = 99/126 (78.57%), Query Frame = 3
Query: 2883 DPHTPASLLKLWFRDLYEPLIPQRFYDQCIHNADSPEICLNIVNSLPDSNRIVFSYLIRLLQAFMIPDNVHFSKMGEDNLAMVWAPNCLRCPSDDPREIFDNTRKEMTFLRTVIKTLDTSFLEGVV 3260
DPH PASLLKLW+R+L EPLIP FY+QCI + DSPE + +V++LP NR+V YLIR LQ F+ P NV +KM NLAMV APNCLRC SDDPR IF+NTRKEM+FLR +I+ LDTSF+EGV+
Sbjct: 958 DPHVPASLLKLWYRELEEPLIPHEFYEQCIAHYDSPEAAVAVVHALPRINRMVLCYLIRFLQVFVQPANVAVTKMDVSNLAMVMAPNCLRCQSDDPRVIFENTRKEMSFLRVLIQHLDTSFMEGVL 1083 HSP 3 Score: 140.584 bits (353), Expect = 2.783e-33 Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 2
Query: 488 VEWVEIIEPSRQEHMFANLTTGQCLWEPPNGVKVKPTHENQWWELFDSNTKRYYYYNATSQKTVWHKPKEGDIIPLSKLQMLKAKEEVRQ--------------KESSTTSLIQPSSPTSK 808
+EWVEIIEP +E M+ANL TG+C+W+PP GV++K T ENQWWELFD NT R+YYYNA++Q+TVWH+P+ DIIPL+KLQ LK E + +E ST+S ++P T K
Sbjct: 28 LEWVEIIEPRTRERMYANLVTGECVWDPPAGVRIKRTSENQWWELFDPNTSRFYYYNASTQRTVWHRPQGCDIIPLAKLQTLKQNTESPRASAESSPGRGSSVSREGSTSSSLEPEPDTEK 148 The following BLAST results are available for this feature:
BLAST of TCONS_00059400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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