TCONS_00059387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059387
Unique NameTCONS_00059387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059387 ID=TCONS_00059387|Name=TCONS_00059387|organism=Clytia hemisphaerica|type=transcript|length=333bp
ATTCAATTTGAATAGGCTGATGTCTTGGGTTCAACGCGACGTTCTTTGTT
GATGCTACCAAAGGTTTGTTACTATCAGAAACACCAACGGCGGCAGAAGA
CACAGCATGTTTGAATTCAGGATCTTCCGAGTTTTCAGCTTCCGCATTGG
CCACTTGTGCAACACGATTTCCCATGCGTGCCATGTTCCCTCCTTTCGCT
ACTACAACCTGTGTTTGACAAACATAAGGAGGTGGTCTAAACAGCTGTAT
TTTATTCCGTGACAAAATATTAAGTAATAAGTCCAACAATCAGATATTTG
CTTAGAATCAGGCATAAATTGACAGATTTGATT
Run BLAST on NCBI

transcript from alignment at scaffold_327:14851..15463+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059387 ID=TCONS_00059387|Name=TCONS_00059387|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at scaffold_327:14851..15463+ (Clytia hemisphaerica)
ATTCAATTTGAATAGGCTGATGTCTTGGGTTCAACGCGACGTTCTTTGTT
GATGCTACCAAAGGTTTGATGCCTGAAAACGAAATAATTAAATATCTTGA
GAAATAGCCACAATATGAAGAGATTACTAGCTGATGAGGAGCAGGATATA
AACAGCTTTCTTGGCCAACTGGGAAGCAAGGCATAAATAACGCAAAGATG
ATAGCTTTGCTTCTAAGACgaaaaaatgcacaaaaatacATCCTTTCAGT
CCAGTcattttttccaggaaaaagaAGGATTCTGTCCGACTTTTTGTCGA
TCTTCTAACAATAATCACACCTCtataaaaaggtttttttctaCAGACTT
ACTATCAGAAACACCAACGGCGGCAGAAGACACAGCATGTTTGAATTCAG
GATCTTCCGAGTTTTCAGCTTCCGCATTGGCCACTTGTGCAACACGATTT
CCCATGCGTGCCATGTTCCCTCCTTTCGCTACTACAACCTGTGTTTGACA
AACATAAGGAGGTGGTCTAAACAGCTGTATTTTATTCCGTGACAAAATAT
TAAGTAATAAGTCCAACAATCAGATATTTGCTTAGAATCAGGCATAAATT
GACAGATTTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037392XLOC_037392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059387-exon-scaffold_327-1491911889:14851..14918TCONS_00059387-exon-scaffold_327-1491911889:14851..14918Clytia hemisphaericaexon
TCONS_00059387-exon-scaffold_327-1510915933:14851..14918TCONS_00059387-exon-scaffold_327-1510915933:14851..14918Clytia hemisphaericaexon
TCONS_00059387-exon-scaffold_327-1575043694:14851..14918TCONS_00059387-exon-scaffold_327-1575043694:14851..14918Clytia hemisphaericaexon
TCONS_00059387-exon-scaffold_327-1491911889:15199..15463TCONS_00059387-exon-scaffold_327-1491911889:15199..15463Clytia hemisphaericaexon
TCONS_00059387-exon-scaffold_327-1510915933:15199..15463TCONS_00059387-exon-scaffold_327-1510915933:15199..15463Clytia hemisphaericaexon
TCONS_00059387-exon-scaffold_327-1575043694:15199..15463TCONS_00059387-exon-scaffold_327-1575043694:15199..15463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:14851..15463 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.7626	13.8906	26.2591	40.7274	17.6652	15.8848	28.0591	32.6135	18.0236	17.7244	17.3673	15.5342	21.5135	24.0402	20.0872	24.2961	41.5027	39.8282	39.5309	30.8765	10.5178	8.31701	8.92014	9.72809	16.0358	14.0873	16.746	17.1364	17.1464	25.6317
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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