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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059384 ID=TCONS_00059384|Name=TCONS_00059384|organism=Clytia hemisphaerica|type=transcript|length=1022bp
CtagttcaagtcccctatcttCAAAAATTCAACAGTTTTGATAAAAAGTG
GGACGACACACGTTCAAGTGCCAACGTTCGTTGTAGTGTATGGCGGACTA
GAGCAGCACAAAATGGATTCTACAACCTCGGTGACATTTTTATAGCTGGA
AGACGAACCCAACCAGAATATGGTTATTTACTTAGAGTGCAGACACATTC
CAAGGATGACATTCTGAAAGACCCTCAATCATACGACCTGATCTGGGATG
ATAGTGGATCATTCGCTTCTTCTGATCTATCTATCTGGAAGACAATTTGT
CCACCGGGTTATAAAGGTCTTGGCAATGTTGTCACTGGTGGAAGTGACCC
TCAGTCTGGCgaaatctattgtttaaaagaaaattacGTACAGGAGGGAG
CAATGTCTGATTGGCAATATGTTTGGAATGATGAAGGCACTGGTGCAGAT
GCTTTTGTAACAATTTATCGTGCAGGTAATGACAGTAGTTATTTTACTGC
AAATGGATTCGGTGCCGTTTCCAATCGTACTTTGCAACCTGATTGGAATC
CACAGTTCTTGATTAAAGGGAGAGTTCTGTTTAAAAATGATGGTTAAATA
CGTCAAGAACAAGacgcttcaaaattttgaaagcgGAACATAAGTTTATT
TTATAATCATTCATACTTTTTTCATAGTTGAATAATATCAAACTTTatcc
cttttcgcgaaagtaaatacCTTGAAAgtaaataccttatcggccaaaac
ttagccggccttaattttagtcggccttaattattagtcgacCCTTATTT
TAGTCGCCTCGtgaaaatttagtcactaaggacCGCCTAAGCGGTTCTAT
TTACAGTTAATTtagcccaaatttttagtcggccctaattttagtcacca
agccaaaatttagtcacttagggccgcctaagttttggccgataaggtat
cttCGAAAATTCTTGAAAGGGCTATTtgtgaaagtttatgctcgcgagaa
atttttgaaaacaaaaaaagaa Run BLAST on NCBI protein sequence of TCONS_00059384-protein >TCONS_00059384-protein ID=TCONS_00059384-protein|Name=TCONS_00059384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
LVQVPYLQKFNSFDKKWDDTRSSANVRCSVWRTRAAQNGFYNLGDIFIAG
RRTQPEYGYLLRVQTHSKDDILKDPQSYDLIWDDSGSFASSDLSIWKTIC
PPGYKGLGNVVTGGSDPQSGEIYCLKENYVQEGAMSDWQYVWNDEGTGAD
AFVTIYRAGNDSSYFTANGFGAVSNRTLQPDWNPQFLIKGRVLFKNDG Run BLAST on NCBI transcript from alignment at scaffold_326:492791..493812 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059384 ID=TCONS_00059384|Name=TCONS_00059384|organism=Clytia hemisphaerica|type=transcript|length=1022bp|location=Sequence derived from alignment at scaffold_326:492791..493812 (Clytia hemisphaerica)
ttctttttttgttttcaaaaatttctcgcgagcataaactttcacaAATA
GCCCTTTCAAGAATTTTCGaagataccttatcggccaaaacttaggcggc
cctaagtgactaaattttggcttggtgactaaaattagggccgactaaaa
atttgggctaAATTAACTGTAAATAGAACCGCTTAGGCGgtccttagtga
ctaaattttcaCGAGGCGACTAAAATAAGGgtcgactaataattaaggcc
gactaaaattaaggccggctaagttttggccgataaggtatttacTTTCA
AGgtatttactttcgcgaaaagggatAAAGTTTGATATTATTCAACTATG
AAAAAAGTATGAATGATTATAAAATAAACTTATGTTCcgctttcaaaatt
ttgaagcgtCTTGTTCTTGACGTATTTAACCATCATTTTTAAACAGAACT
CTCCCTTTAATCAAGAACTGTGGATTCCAATCAGGTTGCAAAGTACGATT
GGAAACGGCACCGAATCCATTTGCAGTAAAATAACTACTGTCATTACCTG
CACGATAAATTGTTACAAAAGCATCTGCACCAGTGCCTTCATCATTCCAA
ACATATTGCCAATCAGACATTGCTCCCTCCTGTACgtaattttcttttaa
acaatagatttcGCCAGACTGAGGGTCACTTCCACCAGTGACAACATTGC
CAAGACCTTTATAACCCGGTGGACAAATTGTCTTCCAGATAGATAGATCA
GAAGAAGCGAATGATCCACTATCATCCCAGATCAGGTCGTATGATTGAGG
GTCTTTCAGAATGTCATCCTTGGAATGTGTCTGCACTCTAAGTAAATAAC
CATATTCTGGTTGGGTTCGTCTTCCAGCTATAAAAATGTCACCGAGGTTG
TAGAATCCATTTTGTGCTGCTCTAGTCCGCCATACACTACAACGAACGTT
GGCACTTGAACGTGTGTCGTCCCACTTTTTATCAAAACTGTTGAATTTTT
GaagataggggacttgaactaG Coding sequence (CDS) from alignment at scaffold_326:492791..493812 >TCONS_00059384 ID=TCONS_00059384|Name=TCONS_00059384|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_326:492791..493812 (Clytia hemisphaerica)
TTAACCATCATTTTTAAACAGAACTCTCCCTTTAATCAAGAACTGTGGAT
TCCAATCAGGTTGCAAAGTACGATTGGAAACGGCACCGAATCCATTTGCA
GTAAAATAACTACTGTCATTACCTGCACGATAAATTGTTACAAAAGCATC
TGCACCAGTGCCTTCATCATTCCAAACATATTGCCAATCAGACATTGCTC
CCTCCTGTACgtaattttcttttaaacaatagatttcGCCAGACTGAGGG
TCACTTCCACCAGTGACAACATTGCCAAGACCTTTATAACCCGGTGGACA
AATTGTCTTCCAGATAGATAGATCAGAAGAAGCGAATGATCCACTATCAT
CCCAGATCAGGTCGTATGATTGAGGGTCTTTCAGAATGTCATCCTTGGAA
TGTGTCTGCACTCTAAGTAAATAACCATATTCTGGTTGGGTTCGTCTTCC
AGCTATAAAAATGTCACCGAGGTTGTAGAATCCATTTTGTGCTGCTCTAG
TCCGCCATACACTACAACGAACGTTGGCACTTGAACGTGTGTCGTCCCAC
TTTTTATCAAAACTGTTGAATTTTTGaagataggggacttgaactaG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059384-exon-scaffold_326-1491911889:492791..493812 | TCONS_00059384-exon-scaffold_326-1491911889:492791..493812 | Clytia hemisphaerica | exon |
| TCONS_00059384-exon-scaffold_326-1510915933:492791..493812 | TCONS_00059384-exon-scaffold_326-1510915933:492791..493812 | Clytia hemisphaerica | exon |
| TCONS_00059384-exon-scaffold_326-1575043694:492791..493812 | TCONS_00059384-exon-scaffold_326-1575043694:492791..493812 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:492791..493812 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009291 | Vps62 |
Blast
The following BLAST results are available for this feature:
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