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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059381 ID=TCONS_00059381|Name=TCONS_00059381|organism=Clytia hemisphaerica|type=transcript|length=1721bp
GGGAAATATAGGTTTTTTGACCATTAATATATAAAGGTGGACCTTTCTTA
CAGAAACAAACATATAGAATAAGATAGAAAAATAGGGGTAAATTTTTGGT
TGGACACATTAGCCATTAAGAAATAGGAAATCATGGTTTATGTAAGGCAG
AGACACAGATAAACATTTATATTGCTTTAGATTACTTTAGATTATTCAAA
CAACTTTCAAAAACTAAAATACAAACATTGGAACGTTTATGGTGGAAAAT
TATGGAAAATTTCCACAGTACAAAAATTAATAAGGTAAAAATCGCATCTG
CTTGTTTTTCACTAGTTTGATACTCTTGTCTTACTTAAAAGTTATTAGTA
TTATTAAGAGATAATTTTATCCACAAAAAATTGCGATGAAAAAGGGGGAA
CAAACAAGAGGGGTCACAAAGGCTGAAAAAAGAGGGGTAGATTTACAAAG
GAAGGATTGAGTACATCCTTTGAAAAATCACAAGCCTTTAAGGTTGTAGG
AACAAAGTTGAATTTAGAAATATGTATAAAAATTAGTCCTAGCAATAAAT
ATTGGAACACAATAGTATCTATCTATCTAAGTTAGGAAATGGTTAAGAAA
AAATGTGGAATgtaaaaatgttcgaaaaatataaaatgttcATGAAAGCA
TCAAGTTCAAATTTCTTGCAGTACTCTTGGAtttcaaagtttctttcaat
aGACTTGGTGAGCTattcaaattatcaaaaagatttttgctACTAGGTAG
ACGCCCACAGCCAAGTGAGAGTTTCGTAAAACTTTCTTTATTGCTGTAAG
GTGTTGTTGTAGGTTTTGAGAAATCAAACCTCCAGTCATCGGTTGGTGTT
TCAGGTGCAGGACTTGTGAGTATAGATTCGTTCAAAATTCGAGGCTTCTT
GGCTTCTCGTTCCTCATCTTTGTTTTCTTCATCAAGAAAACTTTTCTCCA
ATTCAGAAAATGGTAAAGCCAAACTATTACTGTGCAATGCAGTCATAAGC
ATGCGAGATTTCTTTTTAATATCACGACCTTCATTATTGCCAATGTTTGT
AAAATCAAGTCTCTTACAGGTTTTATTTCCGAATTGTGAACCTGCTAGAT
TTCGTCTTGAGatcgaaaatttctttttctgtgGAGCTCTGTCAAGATCG
AGAAAAGTGATGCGGTCATTTCTTGATTCGATTGGAGTTGATGTAAAAGG
TGAAGATAACGCTAAAGGAATCAGTTCCTCAAATTCAACGTGTCCTTCCT
CGAAATAAACCTGCTCCATATTGTAACTTCTGTCAAAGAATATCTACTTG
GGTTCATCTATGACTTCTAAAAGCTTTCCAGTTGAtccaaacagaaagaa
aaacacaCTTCAGAAGCACGAACTCTCAAAGGTGAAATCTACAACTTTAC
AATTTTTCGTAccactttctttttaaatttttgttcgattcgaatgtttt
taaattCTTGGTCTTTGAttggtcaaaaaaagattttcttaaaaaaggaa
CCAATCAAAAAAAGAATCGAACGTCTTTTTAACGACTTTTTGTTTCGGAG
GACATTGCAATGcaactttatttttcttatgcGGGGAGGAGGGGCACGAG
AAGTACGGAAGGGGGAGAGatcttgttgttgttttttctaaggAGAAGGA
GACTGGAAGAAAGTGGCcgaaacaaaagaaaccaatGCAATATGGGGAAT
AATGGATGGATGACCTGAAAT Run BLAST on NCBI protein sequence of TCONS_00059381-protein >TCONS_00059381-protein ID=TCONS_00059381-protein|Name=TCONS_00059381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MEQVYFEEGHVEFEELIPLALSSPFTSTPIESRNDRITFLDLDRAPQKKK
FSISRRNLAGSQFGNKTCKRLDFTNIGNNEGRDIKKKSRMLMTALHSNSL
ALPFSELEKSFLDEENKDEEREAKKPRILNESILTSPAPETPTDDWRFDF
SKPTTTPYSNKESFTKLSLGCGRLPSSKNLFDNLNSSPSLLKETLKSKST
ARNLNLMLS Run BLAST on NCBI transcript from alignment at scaffold_326:364393..366113 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059381 ID=TCONS_00059381|Name=TCONS_00059381|organism=Clytia hemisphaerica|type=transcript|length=1721bp|location=Sequence derived from alignment at scaffold_326:364393..366113 (Clytia hemisphaerica)
ATTTCAGGTCATCCATCCATTATTCCCCATATTGCattggtttcttttgt
ttcgGCCACTTTCTTCCAGTCTCCTTCTccttagaaaaaacaacaacaag
atCTCTCCCCCTTCCGTACTTCTCGTGCCCCTCCTCCCCgcataagaaaa
ataaagttgCATTGCAATGTCCTCCGAAACAAAAAGTCGTTAAAAAGACG
TTCGATTCTTTTTTTGATTGGttccttttttaagaaaatctttttttgac
caaTCAAAGACCAAGaatttaaaaacattcgaatcgaacaaaaatttaaa
aagaaagtggTACGAAAAATTGTAAAGTTGTAGATTTCACCTTTGAGAGT
TCGTGCTTCTGAAGtgtgtttttctttctgtttggaTCAACTGGAAAGCT
TTTAGAAGTCATAGATGAACCCAAGTAGATATTCTTTGACAGAAGTTACA
ATATGGAGCAGGTTTATTTCGAGGAAGGACACGTTGAATTTGAGGAACTG
ATTCCTTTAGCGTTATCTTCACCTTTTACATCAACTCCAATCGAATCAAG
AAATGACCGCATCACTTTTCTCGATCTTGACAGAGCTCcacagaaaaaga
aattttcgatCTCAAGACGAAATCTAGCAGGTTCACAATTCGGAAATAAA
ACCTGTAAGAGACTTGATTTTACAAACATTGGCAATAATGAAGGTCGTGA
TATTAAAAAGAAATCTCGCATGCTTATGACTGCATTGCACAGTAATAGTT
TGGCTTTACCATTTTCTGAATTGGAGAAAAGTTTTCTTGATGAAGAAAAC
AAAGATGAGGAACGAGAAGCCAAGAAGCCTCGAATTTTGAACGAATCTAT
ACTCACAAGTCCTGCACCTGAAACACCAACCGATGACTGGAGGTTTGATT
TCTCAAAACCTACAACAACACCTTACAGCAATAAAGAAAGTTTTACGAAA
CTCTCACTTGGCTGTGGGCGTCTACCTAGTagcaaaaatctttttgataa
tttgaatAGCTCACCAAGTCtattgaaagaaactttgaaaTCCAAGAGTA
CTGCAAGAAATTTGAACTTGATGCTTTCATgaacattttatatttttcga
acatttttacATTCCACATTTTTTCTTAACCATTTCCTAACTTAGATAGA
TAGATACTATTGTGTTCCAATATTTATTGCTAGGACTAATTTTTATACAT
ATTTCTAAATTCAACTTTGTTCCTACAACCTTAAAGGCTTGTGATTTTTC
AAAGGATGTACTCAATCCTTCCTTTGTAAATCTACCCCTCTTTTTTCAGC
CTTTGTGACCCCTCTTGTTTGTTCCCCCTTTTTCATCGCAATTTTTTGTG
GATAAAATTATCTCTTAATAATACTAATAACTTTTAAGTAAGACAAGAGT
ATCAAACTAGTGAAAAACAAGCAGATGCGATTTTTACCTTATTAATTTTT
GTACTGTGGAAATTTTCCATAATTTTCCACCATAAACGTTCCAATGTTTG
TATTTTAGTTTTTGAAAGTTGTTTGAATAATCTAAAGTAATCTAAAGCAA
TATAAATGTTTATCTGTGTCTCTGCCTTACATAAACCATGATTTCCTATT
TCTTAATGGCTAATGTGTCCAACCAAAAATTTACCCCTATTTTTCTATCT
TATTCTATATGTTTGTTTCTGTAAGAAAGGTCCACCTTTATATATTAATG
GTCAAAAAACCTATATTTCCC Coding sequence (CDS) from alignment at scaffold_326:364393..366113 >TCONS_00059381 ID=TCONS_00059381|Name=TCONS_00059381|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_326:364393..366113 (Clytia hemisphaerica)
ATGGAGCAGGTTTATTTCGAGGAAGGACACGTTGAATTTGAGGAACTGAT
TCCTTTAGCGTTATCTTCACCTTTTACATCAACTCCAATCGAATCAAGAA
ATGACCGCATCACTTTTCTCGATCTTGACAGAGCTCcacagaaaaagaaa
ttttcgatCTCAAGACGAAATCTAGCAGGTTCACAATTCGGAAATAAAAC
CTGTAAGAGACTTGATTTTACAAACATTGGCAATAATGAAGGTCGTGATA
TTAAAAAGAAATCTCGCATGCTTATGACTGCATTGCACAGTAATAGTTTG
GCTTTACCATTTTCTGAATTGGAGAAAAGTTTTCTTGATGAAGAAAACAA
AGATGAGGAACGAGAAGCCAAGAAGCCTCGAATTTTGAACGAATCTATAC
TCACAAGTCCTGCACCTGAAACACCAACCGATGACTGGAGGTTTGATTTC
TCAAAACCTACAACAACACCTTACAGCAATAAAGAAAGTTTTACGAAACT
CTCACTTGGCTGTGGGCGTCTACCTAGTagcaaaaatctttttgataatt
tgaatAGCTCACCAAGTCtattgaaagaaactttgaaaTCCAAGAGTACT
GCAAGAAATTTGAACTTGATGCTTTCATga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059381-exon-scaffold_326-1491911889:364393..366113 | TCONS_00059381-exon-scaffold_326-1491911889:364393..366113 | Clytia hemisphaerica | exon |
| TCONS_00059381-exon-scaffold_326-1510915933:364393..366113 | TCONS_00059381-exon-scaffold_326-1510915933:364393..366113 | Clytia hemisphaerica | exon |
| TCONS_00059381-exon-scaffold_326-1575043694:364393..366113 | TCONS_00059381-exon-scaffold_326-1575043694:364393..366113 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:364393..366113 . |
Blast
The following BLAST results are available for this feature:
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