TCONS_00059378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059378
Unique NameTCONS_00059378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059378 ID=TCONS_00059378|Name=TCONS_00059378|organism=Clytia hemisphaerica|type=transcript|length=1240bp
CTCAAACGTATGTGTTGATAagatttacaaaaaacaatgaaTTCAATATA
GTTTTGTTAATGATTACAATTATACTGGAGCCCCCCCCCTCAGTCACATT
TCAAATCGCgaaatcacgcaaaaaaaatttccaaatcatttTATCacaaa
ctaaattttctttctatcacgatcacgttggTTCCTCCGGTCACACAATC
ACGCAAAATCTTAAATTACGAAATCACGAACTTAAAAAACGCCAATCatg
ccatcacgaaaaccgatGGGGGGGTCTCATACTGAAAGTATATAAAAGGA
TGGATCTgttcaatattattttcaaacaaaaaaaacagaaaataatcAGT
CCAGAAAGAATTAAAGTTCGGTAAATTACGCATTGTTAGCATCCTTATAA
CATCTCTTTCCTTGTTTGGATTCCAAAGCCTTATTACATGCATCAGGTGT
CGGTCCTTTGTAATTACCACAGATGAACAGAACCAAATCATCTTGAACGG
CATTCTGGATTTTCTCCGTGTGTTTTCCGTCCACCACAATCCAAGGGACG
TATTGATGTGGTGGTTTCAAGGCGTCAGTTTTCACAGCGATCTGATGTTC
CAAGAAATTACCTTCACTGCCCTCATAACATTTAGAGATGGGTCCCCACT
CAATTTTCAAGGACGCGGCACATGATTTAGCCTTGGCGACAGAGGGTTTT
GTTTCCAGGCAGTGAATGAAAGGCATAAATTGATTGGGATGGCTTAACAA
GTGCAACGCGCATGTCTCGACTAGGTTTAATTGACATTCGAGTGTCCCGT
GTTGGCATTCAAATTTCCATTCATCACCGCGTTTCGATTCGCCCGCATTC
CCATACGGAAACAACCCAATCTCGAACATACCGTACGAGTACAATTTCTG
ATAGGCTGGGTACAATTGGGTGGTGATAAACTCACGGCAGCCGGGGCACA
AGGATTCGTAGTACAAGTCAATTTGGATTGGTTTGACAGCTTCTTTGGTT
TGAGTGATGAAGTTATTCGCTTTACAGTATTCCAGAACTCCACATTCTAC
AGCGTTAGCCTCGTTCTGGCACCAATAGCTATCACCTAGACGACAAGGGT
CAGTGTCCACTACGACATTTGAAACCACGTTGCCAATAACGGCACATAGC
AAGAGATTGAGAGTTAACATTTTGGACTTCCAATAATTCACTGCtggaat
tatcaaaaattatacgCAAAACTTTGCTGTCTTCTATTCA
Run BLAST on NCBI

protein sequence of TCONS_00059378-protein

>TCONS_00059378-protein ID=TCONS_00059378-protein|Name=TCONS_00059378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MLTLNLLLCAVIGNVVSNVVVDTDPCRLGDSYWCQNEANAVECGVLEYCK
ANNFITQTKEAVKPIQIDLYYESLCPGCREFITTQLYPAYQKLYSYGMFE
IGLFPYGNAGESKRGDEWKFECQHGTLECQLNLVETCALHLLSHPNQFMP
FIHCLETKPSVAKAKSCAASLKIEWGPISKCYEGSEGNFLEHQIAVKTDA
LKPPHQYVPWIVVDGKHTEKIQNAVQDDLVLFICGNYKGPTPDACNKALE
SKQGKRCYKDANNA
Run BLAST on NCBI

transcript from alignment at scaffold_326:300840..302079

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059378 ID=TCONS_00059378|Name=TCONS_00059378|organism=Clytia hemisphaerica|type=transcript|length=1240bp|location=Sequence derived from alignment at scaffold_326:300840..302079 (Clytia hemisphaerica)
TGAATAGAAGACAGCAAAGTTTTGcgtataatttttgataattccaGCAG
TGAATTATTGGAAGTCCAAAATGTTAACTCTCAATCTCTTGCTATGTGCC
GTTATTGGCAACGTGGTTTCAAATGTCGTAGTGGACACTGACCCTTGTCG
TCTAGGTGATAGCTATTGGTGCCAGAACGAGGCTAACGCTGTAGAATGTG
GAGTTCTGGAATACTGTAAAGCGAATAACTTCATCACTCAAACCAAAGAA
GCTGTCAAACCAATCCAAATTGACTTGTACTACGAATCCTTGTGCCCCGG
CTGCCGTGAGTTTATCACCACCCAATTGTACCCAGCCTATCAGAAATTGT
ACTCGTACGGTATGTTCGAGATTGGGTTGTTTCCGTATGGGAATGCGGGC
GAATCGAAACGCGGTGATGAATGGAAATTTGAATGCCAACACGGGACACT
CGAATGTCAATTAAACCTAGTCGAGACATGCGCGTTGCACTTGTTAAGCC
ATCCCAATCAATTTATGCCTTTCATTCACTGCCTGGAAACAAAACCCTCT
GTCGCCAAGGCTAAATCATGTGCCGCGTCCTTGAAAATTGAGTGGGGACC
CATCTCTAAATGTTATGAGGGCAGTGAAGGTAATTTCTTGGAACATCAGA
TCGCTGTGAAAACTGACGCCTTGAAACCACCACATCAATACGTCCCTTGG
ATTGTGGTGGACGGAAAACACACGGAGAAAATCCAGAATGCCGTTCAAGA
TGATTTGGTTCTGTTCATCTGTGGTAATTACAAAGGACCGACACCTGATG
CATGTAATAAGGCTTTGGAATCCAAACAAGGAAAGAGATGTTATAAGGAT
GCTAACAATGCGTAATTTACCGAACTTTAATTCTTTCTGGACTgattatt
ttctgttttttttgtttgaaaataatattgaacAGATCCATCCTTTTATA
TACTTTCAGTATGAGACCCCCCCatcggttttcgtgatggcatGATTGGC
GTTTTTTAAGTTCGTGATTTCGTAATTTAAGATTTTGCGTGATTGTGTGA
CCGGAGGAAccaacgtgatcgtgatagaaagaaaatttagtttgtGATAa
aatgatttggaaattttttttgcgtgatttcGCGATTTGAAATGTGACTG
AGGGGGGGGGCTCCAGTATAATTGTAATCATTAACAAAACTATATTGAAt
tcattgttttttgtaaatctTATCAACACATACGTTTGAG

Coding sequence (CDS) from alignment at scaffold_326:300840..302079

>TCONS_00059378 ID=TCONS_00059378|Name=TCONS_00059378|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_326:300840..302079 (Clytia hemisphaerica)
ATGTTAACTCTCAATCTCTTGCTATGTGCCGTTATTGGCAACGTGGTTTC
AAATGTCGTAGTGGACACTGACCCTTGTCGTCTAGGTGATAGCTATTGGT
GCCAGAACGAGGCTAACGCTGTAGAATGTGGAGTTCTGGAATACTGTAAA
GCGAATAACTTCATCACTCAAACCAAAGAAGCTGTCAAACCAATCCAAAT
TGACTTGTACTACGAATCCTTGTGCCCCGGCTGCCGTGAGTTTATCACCA
CCCAATTGTACCCAGCCTATCAGAAATTGTACTCGTACGGTATGTTCGAG
ATTGGGTTGTTTCCGTATGGGAATGCGGGCGAATCGAAACGCGGTGATGA
ATGGAAATTTGAATGCCAACACGGGACACTCGAATGTCAATTAAACCTAG
TCGAGACATGCGCGTTGCACTTGTTAAGCCATCCCAATCAATTTATGCCT
TTCATTCACTGCCTGGAAACAAAACCCTCTGTCGCCAAGGCTAAATCATG
TGCCGCGTCCTTGAAAATTGAGTGGGGACCCATCTCTAAATGTTATGAGG
GCAGTGAAGGTAATTTCTTGGAACATCAGATCGCTGTGAAAACTGACGCC
TTGAAACCACCACATCAATACGTCCCTTGGATTGTGGTGGACGGAAAACA
CACGGAGAAAATCCAGAATGCCGTTCAAGATGATTTGGTTCTGTTCATCT
GTGGTAATTACAAAGGACCGACACCTGATGCATGTAATAAGGCTTTGGAA
TCCAAACAAGGAAAGAGATGTTATAAGGATGCTAACAATGCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037384XLOC_037384Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059378-proteinTCONS_00059378-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059378-exon-scaffold_326-1491911889:300840..302079TCONS_00059378-exon-scaffold_326-1491911889:300840..302079Clytia hemisphaericaexon
TCONS_00059378-exon-scaffold_326-1510915933:300840..302079TCONS_00059378-exon-scaffold_326-1510915933:300840..302079Clytia hemisphaericaexon
TCONS_00059378-exon-scaffold_326-1575043694:300840..302079TCONS_00059378-exon-scaffold_326-1575043694:300840..302079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:300840..302079 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34411	0.134225	0.584428	0.304945	1.85621	2.05352	32.517	33.3412	57.1251	65.1554	60.9404	53.3291	48.5863	52.6439	135.039	162.28	35.8034	34.2615	49.8947	47.2733	50.7708	47.8569	36.2197	40.103	38.3864	27.6644	6.13396	10.5245	110.532	80.7837
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003119SAP_A
IPR004911Interferon-induced_GILT
Blast
[Close]
BLAST of TCONS_00059378 vs. Swiss-Prot (Human)
Match: GILT (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.111e-33
Identity = 71/198 (35.86%), Postives = 102/198 (51.52%), Query Frame = -2 
Query:  394 IQIDLYYESLCPGCREFITTQLYPAYQKLYSYGMFEIGLFPYGNAGESKRGDEWKFECQHGTLECQLNLVETCALHLLSHPNQFMPFIHCLETKPSVAKAKSCAASL---KIEWGPISKCYEGSEGNFLEHQIAVKTDALKPPHQYVPWIVVDGKHTEKIQNAVQDDLVLFICGNYKGPTPDACNKALESKQGKRCYK 978
            + + LYYE+LC GCR F+  +L+P +  L    +  + L PYGNA E      W+F+CQHG  EC+ N VE C L  L     F+  + C+E    + ++      L    +    I +C  G  G  L H  A +TDAL+PPH+YVPW+ V+GK  E      Q  L+  +C  Y+G  PD C  +  S +   C+K
Sbjct:   62 VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDELDMELAFLTIV-CMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLED-----QTQLLTLVCQLYQGKKPDVCPSSTSSLRSV-CFK 250
The following BLAST results are available for this feature:
BLAST of TCONS_00059378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GILT1.111e-3335.86Gamma-interferon-inducible lysosomal thiol reducta... [more]
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