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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059376 ID=TCONS_00059376|Name=TCONS_00059376|organism=Clytia hemisphaerica|type=transcript|length=2760bp
CTCAAACAGCAGCAGGAGGCGGATCCATCAAGCCACGTTGTTCATTTGCG
GTAGAATACGCTTCAGATCTCGATTGCGTGCCACGGCGTGATACGTAAGT
CGAGCGTGTTGTTGTGCGTAAAGAACGTTGGCTACGTATGTCACGATATA
CTTTGAAAACACGGTCAGTCACGATATACAACAGCCATATAAAAACACCA
CGGAATGATCGTACCACGGAATAAATTATTCGGAACACGGTATTCAAGAT
ACGGCCTTGTTCCGTTGTTGCACCTTTGATTTGAATAAGTCCTAACAGTT
CTATGACACCAATTAAAATTATCAGCTTGAGTGACATGCGTGCTATGGAG
ACGTCTTGCCCGCCTGTTTTTTTCAAGAGTTTCTTCGATTTACGGCTTTG
TTTACATATACAAAATATTGTGTAAGAGAGTACAGCAACGTTGAATAGTG
TAATCAAAGCCATAGGTAGAATGTATGCGATGAGTCGTGGTGTAAATAGG
GCTATCCAACAAACACCACCTAAACCATAACCAAAATTAACTGTAGCCGA
CATTTCCAAGGCAACACAAATGATAACAATAACAAGCGGTACTAAATAAC
CAACAGCTAAATACCAATGAAAACGTTTATTGCTTTTAACATTCCTCACA
CCTCGGCGACCATGAAAAGTAGACCAAATATCATATGCCACAATTCCAGC
CCATACCTGAACCGATAGCGTAAAGTAATGTAAAAAAGCACCAAAAGTAG
CACATGCTGAATTAGAAAGTCTTAACATTGTGATCAGCATTGTTATATCA
GCACTTAAGAGAACAGTACATAAGCACACAATGTTTTTGCCAGGGATCGT
CTTCAAAGCCGGGATAATAGTATAGGTTAAAATGACCCAAACGTAACAAA
ATATACTCATAAAACAGCCCACAATTGTGATGTACTTTTCGACTCCATTT
GCCACGCTTTCCCAGCCTTGAACCGAAGCGGTTTTTGGTCCAATTGTGAG
ACACACCCCGAGTCCAGTATCAATGGGAACATAATCTTGGGGCGGAAATT
GGGCGCCTGTTGACTCATCCTTGATCGTAGCATTATCAAAATGTGTATAA
TTGTCTATGATGCGTTTTGGACACGATGAGTCTAGATGAAACGTTTTACA
AGTCGTGATTTGAATTTCAGCGTCTGTAGACCTCTCACGGAAAATTTAAT
TCAAGACATATTGTgtatttggtattttctcgGATTTGGTGATAAGCCAA
CAATTAAGTGATATGTTATAATTTGAAGTTGTTAAGGCAGCAGTTTGTGC
ACAAATTTTATCATTTCTAAATGTTCGTTTGAAATCTGGTCCGTAAAATG
GCGTCAAGTAATGATGTTGGACTGTCGATTTAATAATGGTGGCGTAGTTA
CCGTAAACTTGTTTAACATCGTCAATATGTTTTATATCGAATGAGAAAGA
CAGTGTTTTTGAAGTATTAAGCAACAGCTTGCCGTATTTTGGTATATGGG
TACCGTTTGgcattttgtttttatcaaggaTGGCATTGATGGTTGGTGAT
AAACAACGTTTAAGAATCTCCTTTTGGCTGACCCCAATTTCACCAGCGCC
AAAATCTGGGTTCGGTGTTACTGGAACCTTTTTAACACACTTTGTACCTT
GTTTTTCATAACCAAATCCACATGAAAATTCATCGATACATTGTTTTACC
ACAATGTCATAAATTTGTCCTTTAGAGCATTTGTTAGAAGGATCTTGGTG
AAGGTCTTCAAAACTGACAAGTTGTGAATAAGTATCCGTAGCTCCGAAAC
CAATATTATGTATTTCAAGTCTTGATTTAGGGAGAGTAAAAGGACACGAC
CCTTTATCAGATTCTAAATCTAGTTCTTCTCCAGTGATGAGTTTGAAGCA
ATGATGGTTATCGTAACATTTGTAAAGAGGACCTGCTGTTATACTGGCTC
TATATGAATGACATAATCTCGATGTCAAATCCTGTGTTACCGTTTTGGGC
ATTTCcgctttattaaaaaaattcgcACAAACCCGGATTGATTCATTCTC
AACCATGTTTGAcatatttgaaagtttgattttaCAAGACGTGAATTTCT
CCGTGAAAGTTTTCGCATTTGGTTTTTCAGATTCAATACAATTGCTAGCA
CTTAAGTCAAGTTTTTTGTAATCCTGGATCTGGTTACACTGGGCACaatg
tttgttcttataaataagtCCATCATTCCCAAGAATGGGTTGGACATCAG
TAACGGATGTAGAGGATCTGCATTTGGTTTTTTGATCTTTGGTTGCACTA
GACAAACACTCAGTCCGCATCAAGATTTTCTCTACGGTGAATGTTGACGG
TAGATTATTTGTCACGGCTTGACATTCCAATTTCGGGTGTTTGTCAACTT
CCTGTAGGAAACGTTCTGTGTATTTCGGTATAGGTTCTGGATTCGATGCA
TTCCATAGATAGTCCATACAACAGCTTCTAAATCTCATACACGTTGATTT
ACAGCTGCaagcttttttgttttgtggtgGTTGAAATGAATTGCCAAATC
CTCCAGGCGGTGATCGAATCTTAGCGGCAGCGTGACATAGCATGGATACT
TTATCTAACATTAACGGTGGTTCTTTTGTTAATCCGAGAAACTCTCGGTA
AGGGAAAGAGGTTTTGGCTGCATTTGAGAAGGAGGCTGTCGCCATAGCAA
TCAGTATAATGATAAACAGCttcttcatttttgtaattgtgatattttct
ttgttgttac Run BLAST on NCBI protein sequence of TCONS_00059376-protein >TCONS_00059376-protein ID=TCONS_00059376-protein|Name=TCONS_00059376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
NNKENITITKMKKLFIIILIAMATASFSNAAKTSFPYREFLGLTKEPPLM
LDKVSMLCHAAAKIRSPPGGFGNSFQPPQNKKACSCKSTCMRFRSCCMDY
LWNASNPEPIPKYTERFLQEVDKHPKLECQAVTNNLPSTFTVEKILMRTE
CLSSATKDQKTKCRSSTSVTDVQPILGNDGLIYKNKHCAQCNQIQDYKKL
DLSASNCIESEKPNAKTFTEKFTSCKIKLSNMSNMVENESIRVCANFFNK
AEMPKTVTQDLTSRLCHSYRASITAGPLYKCYDNHHCFKLITGEELDLES
DKGSCPFTLPKSRLEIHNIGFGATDTYSQLVSFEDLHQDPSNKCSKGQIY
DIVVKQCIDEFSCGFGYEKQGTKCVKKVPVTPNPDFGAGEIGVSQKEILK
RCLSPTINAILDKNKMPNGTHIPKYGKLLLNTSKTLSFSFDIKHIDDVKQ
VYGNYATIIKSTVQHHYLTPFYGPDFKRTFRNDKICAQTAALTTSNYNIS
LNCWLITKSEKIPNTQYVLN Run BLAST on NCBI transcript from alignment at scaffold_326:264031..266790 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059376 ID=TCONS_00059376|Name=TCONS_00059376|organism=Clytia hemisphaerica|type=transcript|length=2760bp|location=Sequence derived from alignment at scaffold_326:264031..266790 (Clytia hemisphaerica)
gtaacaacaaagaaaatatcacaattacaaaaatgaagaaGCTGTTTATC
ATTATACTGATTGCTATGGCGACAGCCTCCTTCTCAAATGCAGCCAAAAC
CTCTTTCCCTTACCGAGAGTTTCTCGGATTAACAAAAGAACCACCGTTAA
TGTTAGATAAAGTATCCATGCTATGTCACGCTGCCGCTAAGATTCGATCA
CCGCCTGGAGGATTTGGCAATTCATTTCAACcaccacaaaacaaaaaagc
ttGCAGCTGTAAATCAACGTGTATGAGATTTAGAAGCTGTTGTATGGACT
ATCTATGGAATGCATCGAATCCAGAACCTATACCGAAATACACAGAACGT
TTCCTACAGGAAGTTGACAAACACCCGAAATTGGAATGTCAAGCCGTGAC
AAATAATCTACCGTCAACATTCACCGTAGAGAAAATCTTGATGCGGACTG
AGTGTTTGTCTAGTGCAACCAAAGATCAAAAAACCAAATGCAGATCCTCT
ACATCCGTTACTGATGTCCAACCCATTCTTGGGAATGATGGacttattta
taagaacaaacattGTGCCCAGTGTAACCAGATCCAGGATTACAAAAAAC
TTGACTTAAGTGCTAGCAATTGTATTGAATCTGAAAAACCAAATGCGAAA
ACTTTCACGGAGAAATTCACGTCTTGtaaaatcaaactttcaaatatgTC
AAACATGGTTGAGAATGAATCAATCCGGGTTTGTgcgaatttttttaata
aagcgGAAATGCCCAAAACGGTAACACAGGATTTGACATCGAGATTATGT
CATTCATATAGAGCCAGTATAACAGCAGGTCCTCTTTACAAATGTTACGA
TAACCATCATTGCTTCAAACTCATCACTGGAGAAGAACTAGATTTAGAAT
CTGATAAAGGGTCGTGTCCTTTTACTCTCCCTAAATCAAGACTTGAAATA
CATAATATTGGTTTCGGAGCTACGGATACTTATTCACAACTTGTCAGTTT
TGAAGACCTTCACCAAGATCCTTCTAACAAATGCTCTAAAGGACAAATTT
ATGACATTGTGGTAAAACAATGTATCGATGAATTTTCATGTGGATTTGGT
TATGAAAAACAAGGTACAAAGTGTGTTAAAAAGGTTCCAGTAACACCGAA
CCCAGATTTTGGCGCTGGTGAAATTGGGGTCAGCCAAAAGGAGATTCTTA
AACGTTGTTTATCACCAACCATCAATGCCAtccttgataaaaacaaaatg
cCAAACGGTACCCATATACCAAAATACGGCAAGCTGTTGCTTAATACTTC
AAAAACACTGTCTTTCTCATTCGATATAAAACATATTGACGATGTTAAAC
AAGTTTACGGTAACTACGCCACCATTATTAAATCGACAGTCCAACATCAT
TACTTGACGCCATTTTACGGACCAGATTTCAAACGAACATTTAGAAATGA
TAAAATTTGTGCACAAACTGCTGCCTTAACAACTTCAAATTATAACATAT
CACTTAATTGTTGGCTTATCACCAAATCcgagaaaataccaaatacACAA
TATGTCTTGAATTAAATTTTCCGTGAGAGGTCTACAGACGCTGAAATTCA
AATCACGACTTGTAAAACGTTTCATCTAGACTCATCGTGTCCAAAACGCA
TCATAGACAATTATACACATTTTGATAATGCTACGATCAAGGATGAGTCA
ACAGGCGCCCAATTTCCGCCCCAAGATTATGTTCCCATTGATACTGGACT
CGGGGTGTGTCTCACAATTGGACCAAAAACCGCTTCGGTTCAAGGCTGGG
AAAGCGTGGCAAATGGAGTCGAAAAGTACATCACAATTGTGGGCTGTTTT
ATGAGTATATTTTGTTACGTTTGGGTCATTTTAACCTATACTATTATCCC
GGCTTTGAAGACGATCCCTGGCAAAAACATTGTGTGCTTATGTACTGTTC
TCTTAAGTGCTGATATAACAATGCTGATCACAATGTTAAGACTTTCTAAT
TCAGCATGTGCTACTTTTGGTGCTTTTTTACATTACTTTACGCTATCGGT
TCAGGTATGGGCTGGAATTGTGGCATATGATATTTGGTCTACTTTTCATG
GTCGCCGAGGTGTGAGGAATGTTAAAAGCAATAAACGTTTTCATTGGTAT
TTAGCTGTTGGTTATTTAGTACCGCTTGTTATTGTTATCATTTGTGTTGC
CTTGGAAATGTCGGCTACAGTTAATTTTGGTTATGGTTTAGGTGGTGTTT
GTTGGATAGCCCTATTTACACCACGACTCATCGCATACATTCTACCTATG
GCTTTGATTACACTATTCAACGTTGCTGTACTCTCTTACACAATATTTTG
TATATGTAAACAAAGCCGTAAATCGAAGAAACTCTTGAAAAAAACAGGCG
GGCAAGACGTCTCCATAGCACGCATGTCACTCAAGCTGATAATTTTAATT
GGTGTCATAGAACTGTTAGGACTTATTCAAATCAAAGGTGCAACAACGGA
ACAAGGCCGTATCTTGAATACCGTGTTCCGAATAATTTATTCCGTGGTAC
GATCATTCCGTGGTGTTTTTATATGGCTGTTGTATATCGTGACTGACCGT
GTTTTCAAAGTATATCGTGACATACGTAGCCAACGTTCTTTACGCACAAC
AACACGCTCGACTTACGTATCACGCCGTGGCACGCAATCGAGATCTGAAG
CGTATTCTACCGCAAATGAACAACGTGGCTTGATGGATCCGCCTCCTGCT
GCTGTTTGAG Coding sequence (CDS) from alignment at scaffold_326:264031..266790 >TCONS_00059376 ID=TCONS_00059376|Name=TCONS_00059376|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at scaffold_326:264031..266790 (Clytia hemisphaerica)
aacaacaaagaaaatatcacaattacaaaaatgaagaaGCTGTTTATCAT
TATACTGATTGCTATGGCGACAGCCTCCTTCTCAAATGCAGCCAAAACCT
CTTTCCCTTACCGAGAGTTTCTCGGATTAACAAAAGAACCACCGTTAATG
TTAGATAAAGTATCCATGCTATGTCACGCTGCCGCTAAGATTCGATCACC
GCCTGGAGGATTTGGCAATTCATTTCAACcaccacaaaacaaaaaagctt
GCAGCTGTAAATCAACGTGTATGAGATTTAGAAGCTGTTGTATGGACTAT
CTATGGAATGCATCGAATCCAGAACCTATACCGAAATACACAGAACGTTT
CCTACAGGAAGTTGACAAACACCCGAAATTGGAATGTCAAGCCGTGACAA
ATAATCTACCGTCAACATTCACCGTAGAGAAAATCTTGATGCGGACTGAG
TGTTTGTCTAGTGCAACCAAAGATCAAAAAACCAAATGCAGATCCTCTAC
ATCCGTTACTGATGTCCAACCCATTCTTGGGAATGATGGacttatttata
agaacaaacattGTGCCCAGTGTAACCAGATCCAGGATTACAAAAAACTT
GACTTAAGTGCTAGCAATTGTATTGAATCTGAAAAACCAAATGCGAAAAC
TTTCACGGAGAAATTCACGTCTTGtaaaatcaaactttcaaatatgTCAA
ACATGGTTGAGAATGAATCAATCCGGGTTTGTgcgaatttttttaataaa
gcgGAAATGCCCAAAACGGTAACACAGGATTTGACATCGAGATTATGTCA
TTCATATAGAGCCAGTATAACAGCAGGTCCTCTTTACAAATGTTACGATA
ACCATCATTGCTTCAAACTCATCACTGGAGAAGAACTAGATTTAGAATCT
GATAAAGGGTCGTGTCCTTTTACTCTCCCTAAATCAAGACTTGAAATACA
TAATATTGGTTTCGGAGCTACGGATACTTATTCACAACTTGTCAGTTTTG
AAGACCTTCACCAAGATCCTTCTAACAAATGCTCTAAAGGACAAATTTAT
GACATTGTGGTAAAACAATGTATCGATGAATTTTCATGTGGATTTGGTTA
TGAAAAACAAGGTACAAAGTGTGTTAAAAAGGTTCCAGTAACACCGAACC
CAGATTTTGGCGCTGGTGAAATTGGGGTCAGCCAAAAGGAGATTCTTAAA
CGTTGTTTATCACCAACCATCAATGCCAtccttgataaaaacaaaatgcC
AAACGGTACCCATATACCAAAATACGGCAAGCTGTTGCTTAATACTTCAA
AAACACTGTCTTTCTCATTCGATATAAAACATATTGACGATGTTAAACAA
GTTTACGGTAACTACGCCACCATTATTAAATCGACAGTCCAACATCATTA
CTTGACGCCATTTTACGGACCAGATTTCAAACGAACATTTAGAAATGATA
AAATTTGTGCACAAACTGCTGCCTTAACAACTTCAAATTATAACATATCA
CTTAATTGTTGGCTTATCACCAAATCcgagaaaataccaaatacACAATA
TGTCTTGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059376-exon-scaffold_326-1491911889:264031..266790 | TCONS_00059376-exon-scaffold_326-1491911889:264031..266790 | Clytia hemisphaerica | exon |
| TCONS_00059376-exon-scaffold_326-1510915933:264031..266790 | TCONS_00059376-exon-scaffold_326-1510915933:264031..266790 | Clytia hemisphaerica | exon |
| TCONS_00059376-exon-scaffold_326-1575043694:264031..266790 | TCONS_00059376-exon-scaffold_326-1575043694:264031..266790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:264031..266790 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001212 | Somatomedin_B_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030247 | polysaccharide binding |
| GO:0005044 | scavenger receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006955 | immune response |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006955 |
immune response |
| molecular_function |
GO:0030247 |
polysaccharide binding |
| molecular_function |
GO:0005044 |
scavenger receptor activity |
Blast
The following BLAST results are available for this feature:
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