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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059348 ID=TCONS_00059348|Name=TCONS_00059348|organism=Clytia hemisphaerica|type=transcript|length=2855bp
GACAGCTATTTCTCTGCAGAAATCCTTTTCTATAAAGCTTTATCgtaatt
tcatattttgatagTACATCAAATGAAAACGTTtgttttaaaatcaaata
aaaaaatcaatgtaATGATAAATGGTAAATGGTGGTACATGCAGTATGGT
GGTGCGTgtcttcaaaagtttaaagaattATCGTTTCTTTAATTGAATCT
GTAAACCATTTTCAGATTTGTGTATGAGCTCAAAGCAAGCAGTCACATCT
TCCATTTTCTGTGCGGCTTTAACTTCATAATTCAACATGACATGGTACAG
TAAAATCTTCTCTTCCAACATTGCAAACTTCTGACCAATGCAGTTTCGTG
GGCCTGCGCTGAAAGGAATATAACAATAAGGATTTCGCTTGACATACTTT
TCATCTGAAAATCGATCTGGATTGAATTTCTCCGGCTCATCCCAATATTC
GGGGTTTGTATGTAAGGAAATGACATCAATCATTAATGTTGTTCCCTTGG
GAATGGACACATTGTAAATTTTGGTATCTTGTTCCAGCTCACGTGCAAAG
ACAGCCACAGGTGGATGAAGACGTAAACCTTCTTTCACAACATATTCAAG
ATATTTGATTCCACGTATCTTTTCAACCAAATCTTCTTCCTTGTCAGCTA
CTTTATCAATCTCCTCATGAAGCTTTTGTTGAATTTTTGGATTTAACCCA
AGTCGGAATAAAGTCCAACTCAATCCTGCAGCAGTTGTATCATGACCTTC
AAACATAAAGGTATCCACCTCTTCTCGGATCCCCTCAATATCAATTTCTC
CTTTCTCGTACAAATCCAAAAGCATATCCATAAATGCTTTTATTTTTCGG
CCAGTACTTTCAGCTCCAGATTGCCTTGCTTTGATATTATCATTGATCAC
ATTAGCTGTGAAACTGTGAAGAATACTCAAATGTTCTTTAAACTGTTTTC
CTTGACTAGTTCTCCAGTATAGGGGCTCTGGCCAAAGCCATGGTGATTTC
TGGCGCTGTTGTAACAATTTGCTCCCAGCATTTATTGCATTTACATACTC
AGATTCTGCATGATCTTGAGCATTAACAGATACGCCCATGGCTGTTTCAC
ATATGATATCAAGAGTAGCCAAACTAACAGGAATCTGAGCATCGAAAGCT
TCCCCAGTGACAGCATAGGATTTCAGGTTCTGAACCNAGAAATCCTTTTC
TATAAAGCTTTATCgtaatttcatattttgatagTACATCAAATGAAAAC
GTTtgttttaaaatcaaataaaaaaatcaatgtaATGATAAATGGTAAAT
GGTGGTACATGCAGTATGGTGGTGCGTgtcttcaaaagtttaaagaattA
TCGTTTCTTTAATTGAATCTGTAAACCATTTTCAGATTTGTGTATGAGCT
CAAAGCAAGCAGTCACATCTTCCATTTTCTGTGCGGCTTTAACTTCATAA
TTCAACATGACATGGTACAGTAAAATCTTCTCTTCCAACATTGCAAACTT
CTGACCAATGCAGTTTCGTGGGCCTGCGCTGAAAGGAATATAACAATAAG
GATTTCGCTTGACATACTTTTCATCTGAAAATCGATCTGGATTGAATTTC
TCCGGCTCATCCCAATATTCGGGGTTTGTATGTAAGGAAATGACATCAAT
CATTAATGTTGTTCCCTTGGGAATGGACACATTGTAAATTTTGGTATCTT
GTTCCAGCTCACGTGCAAAGACAGCCACAGGTGGATGAAGACGTAAACCT
TCTTTCACAACATATTCAAGATATTTGATTCCACGTATCTTTTCAACCAA
ATCTTCTTCCTTGTCAGCTACTTTATCAATCTCCTCATGAAGCTTTTGTT
GAATTTTTGGATTTAACCCAAGTTGGAATAAAGTCCAACTCAATCCAGCA
GCAGTTGTATCATGACCTTCAAACATAAAGGTATCCACCTCCTCTCGAAT
CCCTTCAATATCAATTTCTCCTTTCTCGTACAAATCCAAAAGCATATCCA
TAAATGCTTTTGTTTTTCGGCCAGCACTTTCAGCTCCAGATTGCCTTGCT
TTGATATTATCATTGATCACATTAGCTGTGAAACTGTGAAGAACACGTAA
ATGTTCTTTAAACTGTTTTCCTTGACTAGTTATCCAGTATATGGGCTCTG
GCCAAAGCCATGGTGATTTCTGGCGCTGTTGTAACAACTTGCTCCCAGCA
TTTATTGCATTTACATACTCAGATTCTGCGTGATCTTGAGCATTAACAGA
TACACCCATGGCTGTTTCACATATGATATCAAGAGTAGCCAAACTAACAG
GAATCTGAGCATCAAAAGCTTCCCCAGTGACAGCATAGGATTTCAGGTTC
TGGACTAAGATTTGTGATTGttttatgaaaatcttttgaaaatcatttaG
GATTGTGAAATGAAAGGATGGAGTGATTGCTCTTCTGCGTGATTTCCATT
TTTGATGAGTTGATGTTAAAAGGCCGGTCCCAAGCCAGGGATGCAAGGTA
TGATAGAGATAAGATTTGGTGATGATCTCTTGGCTCTTTAGCACAAGTTC
TGCACCCTCTACTTTTGCAACCCATAGAGCCGGATGAAAGAAAAACCACA
AAACAAAACAGTAATCATTATCAACAGCATACTTTCTGATTTGTTTAAAG
AATTTATGAGCTTCTGTTTCTAAGTGCAAACATGAACCAAGGATAGGATA
ATAAGGAGCCATCTTTAAACCCTCAAACCTTGATATTTTCATCTTCCAAA
ACAACATAAGGattgaaaatatcaaaagaagTACCACTGTAAATATAAGT
AACATTTTTATAactggaagaaaaacaaaaaataatgaattaaaaTGTGT
CTCAT Run BLAST on NCBI transcript from alignment at scaffold_326:446295..449149+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059348 ID=TCONS_00059348|Name=TCONS_00059348|organism=Clytia hemisphaerica|type=transcript|length=2855bp|location=Sequence derived from alignment at scaffold_326:446295..449149+ (Clytia hemisphaerica)
GACAGCTATTTCTCTGCAGAAATCCTTTTCTATAAAGCTTTATCgtaatt
tcatattttgatagTACATCAAATGAAAACGTTtgttttaaaatcaaata
aaaaaatcaatgtaATGATAAATGGTAAATGGTGGTACATGCAGTATGGT
GGTGCGTgtcttcaaaagtttaaagaattATCGTTTCTTTAATTGAATCT
GTAAACCATTTTCAGATTTGTGTATGAGCTCAAAGCAAGCAGTCACATCT
TCCATTTTCTGTGCGGCTTTAACTTCATAATTCAACATGACATGGTACAG
TAAAATCTTCTCTTCCAACATTGCAAACTTCTGACCAATGCAGTTTCGTG
GGCCTGCGCTGAAAGGAATATAACAATAAGGATTTCGCTTGACATACTTT
TCATCTGAAAATCGATCTGGATTGAATTTCTCCGGCTCATCCCAATATTC
GGGGTTTGTATGTAAGGAAATGACATCAATCATTAATGTTGTTCCCTTGG
GAATGGACACATTGTAAATTTTGGTATCTTGTTCCAGCTCACGTGCAAAG
ACAGCCACAGGTGGATGAAGACGTAAACCTTCTTTCACAACATATTCAAG
ATATTTGATTCCACGTATCTTTTCAACCAAATCTTCTTCCTTGTCAGCTA
CTTTATCAATCTCCTCATGAAGCTTTTGTTGAATTTTTGGATTTAACCCA
AGTCGGAATAAAGTCCAACTCAATCCTGCAGCAGTTGTATCATGACCTTC
AAACATAAAGGTATCCACCTCTTCTCGGATCCCCTCAATATCAATTTCTC
CTTTCTCGTACAAATCCAAAAGCATATCCATAAATGCTTTTATTTTTCGG
CCAGTACTTTCAGCTCCAGATTGCCTTGCTTTGATATTATCATTGATCAC
ATTAGCTGTGAAACTGTGAAGAATACTCAAATGTTCTTTAAACTGTTTTC
CTTGACTAGTTCTCCAGTATAGGGGCTCTGGCCAAAGCCATGGTGATTTC
TGGCGCTGTTGTAACAATTTGCTCCCAGCATTTATTGCATTTACATACTC
AGATTCTGCATGATCTTGAGCATTAACAGATACGCCCATGGCTGTTTCAC
ATATGATATCAAGAGTAGCCAAACTAACAGGAATCTGAGCATCGAAAGCT
TCCCCAGTGACAGCATAGGATTTCAGGTTCTGAACCNAGAAATCCTTTTC
TATAAAGCTTTATCgtaatttcatattttgatagTACATCAAATGAAAAC
GTTtgttttaaaatcaaataaaaaaatcaatgtaATGATAAATGGTAAAT
GGTGGTACATGCAGTATGGTGGTGCGTgtcttcaaaagtttaaagaattA
TCGTTTCTTTAATTGAATCTGTAAACCATTTTCAGATTTGTGTATGAGCT
CAAAGCAAGCAGTCACATCTTCCATTTTCTGTGCGGCTTTAACTTCATAA
TTCAACATGACATGGTACAGTAAAATCTTCTCTTCCAACATTGCAAACTT
CTGACCAATGCAGTTTCGTGGGCCTGCGCTGAAAGGAATATAACAATAAG
GATTTCGCTTGACATACTTTTCATCTGAAAATCGATCTGGATTGAATTTC
TCCGGCTCATCCCAATATTCGGGGTTTGTATGTAAGGAAATGACATCAAT
CATTAATGTTGTTCCCTTGGGAATGGACACATTGTAAATTTTGGTATCTT
GTTCCAGCTCACGTGCAAAGACAGCCACAGGTGGATGAAGACGTAAACCT
TCTTTCACAACATATTCAAGATATTTGATTCCACGTATCTTTTCAACCAA
ATCTTCTTCCTTGTCAGCTACTTTATCAATCTCCTCATGAAGCTTTTGTT
GAATTTTTGGATTTAACCCAAGTTGGAATAAAGTCCAACTCAATCCAGCA
GCAGTTGTATCATGACCTTCAAACATAAAGGTATCCACCTCCTCTCGAAT
CCCTTCAATATCAATTTCTCCTTTCTCGTACAAATCCAAAAGCATATCCA
TAAATGCTTTTGTTTTTCGGCCAGCACTTTCAGCTCCAGATTGCCTTGCT
TTGATATTATCATTGATCACATTAGCTGTGAAACTGTGAAGAACACGTAA
ATGTTCTTTAAACTGTTTTCCTTGACTAGTTATCCAGTATATGGGCTCTG
GCCAAAGCCATGGTGATTTCTGGCGCTGTTGTAACAACTTGCTCCCAGCA
TTTATTGCATTTACATACTCAGATTCTGCGTGATCTTGAGCATTAACAGA
TACACCCATGGCTGTTTCACATATGATATCAAGAGTAGCCAAACTAACAG
GAATCTGAGCATCAAAAGCTTCCCCAGTGACAGCATAGGATTTCAGGTTC
TGGACTAAGATTTGTGATTGttttatgaaaatcttttgaaaatcatttaG
GATTGTGAAATGAAAGGATGGAGTGATTGCTCTTCTGCGTGATTTCCATT
TTTGATGAGTTGATGTTAAAAGGCCGGTCCCAAGCCAGGGATGCAAGGTA
TGATAGAGATAAGATTTGGTGATGATCTCTTGGCTCTTTAGCACAAGTTC
TGCACCCTCTACTTTTGCAACCCATAGAGCCGGATGAAAGAAAAACCACA
AAACAAAACAGTAATCATTATCAACAGCATACTTTCTGATTTGTTTAAAG
AATTTATGAGCTTCTGTTTCTAAGTGCAAACATGAACCAAGGATAGGATA
ATAAGGAGCCATCTTTAAACCCTCAAACCTTGATATTTTCATCTTCCAAA
ACAACATAAGGattgaaaatatcaaaagaagTACCACTGTAAATATAAGT
AACATTTTTATAactggaagaaaaacaaaaaataatgaattaaaaTGTGT
CTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059348-exon-scaffold_326-1491911889:446295..449149 | TCONS_00059348-exon-scaffold_326-1491911889:446295..449149 | Clytia hemisphaerica | exon |
| TCONS_00059348-exon-scaffold_326-1510915933:446295..449149 | TCONS_00059348-exon-scaffold_326-1510915933:446295..449149 | Clytia hemisphaerica | exon |
| TCONS_00059348-exon-scaffold_326-1575043694:446295..449149 | TCONS_00059348-exon-scaffold_326-1575043694:446295..449149 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:446295..449149 + |
Blast
BLAST of TCONS_00059348 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 370.548 bits (950), Expect = 1.936e-116 Identity = 199/461 (43.17%), Postives = 294/461 (63.77%), Query Frame = -3
Query: 1375 MAPYYPILGSCLHLETEAHKFFKQIRKYAVDNDYCFVLWFFFHPALWVA--KVEGAELVLKSQEIITKSYLYHTLHPWLGTGLLTSTHQKWKSRRRAITPSFHFTILNDFQKIFIKQSQILVQNLKSYAVTGEAFDAQIPVSLATLDIICETAMGVSVNAQDHAESEYVNAINAGSKLLQQRQKSPWLWPEPIYWITSQGKQFKEHLRVLHSFT-------ANVINDNIKARQSGAESAGRKTK--AFMDMLLDLY--EKGEIDIEGIREEVDTFMFEGHDTTAAGLSWTLFQLGLNPKIQQKLHEEIDKVADKEED--LVEKIRGIKYLEYVVKEGLRLHPPVAVFARELEQDTKIYNVSIPKGTTLMIDVISLHTNPEYWDEPEKFNPDRFSDEKYVKRNPYCYIPFSAGPRNCIGQKFAMLEEKILLYHVMLNYEVKAAQKMEDVTACFELIHKSENG 2712
+A YP++G L ++ + +FF+QI +Y + + +L + P VA E E++L S + I KS +Y L PWLG GLLTST KW+SRR+ +TP+FHFTIL DF I +Q+ ILV+ L+ + + EAF+ ++L LDIICETAMG ++ AQ + +SEYV A+ S+++ +R K PWLW + Y + +G + K+ L++LH+FT AN +N N R G SA K K AF+D+LL + E + E IREEVDTFMFEGHDTTAA ++W+L+ LG NP++Q+K+ E+D V K + VE ++ ++YLE V+KE LRL P V +FAR + +D ++ + KGT +I +LH +P Y+ PE+F P+RF E R+PY Y+PFSAGPRNCIGQKFA++EEK +L ++ ++ +++ QK E++ +LI + NG
Sbjct: 53 VARAYPLVGHALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKH-INQEAFNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNG 512 HSP 2 Score: 274.248 bits (700), Expect = 8.446e-81 Identity = 141/332 (42.47%), Postives = 213/332 (64.16%), Query Frame = -3
Query: 205 VTGEAFDAQIPVSLATLDIICETAMGVSVNAQDHAESEYVNAINAGSKLLQQRQKSPWLWPEPLYWRTSQGKQFKEHLSILHSFTANVI---------NDNIKARQSGAESTGRKIKAFMDMLLDLY--EKGEIDIEGIREEVDTFMFEGHDTTAAGLSWTLFRLGLNPKIQQKLHEEIDKVADKEED--LVEKIRGIKYLEYVVKEGLRLHPPVAVFARELEQDTKIYNVSIPKGTTLMIDVISLHTNPEYWDEPEKFNPDRFSDEKYVKRNPYCYIPFSAGPRNCIGQKFAMLEEKILLYHVMLNYEVKAAQKMEDVTACFELIHKSENG 1161
+ EAF+ ++L LDIICETAMG ++ AQ + +SEYV A+ S+++ +R K PWLW + Y +G + K+ L ILH+FT +VI N++ + G+ + K +AF+D+LL + E + E IREEVDTFMFEGHDTTAA ++W+L+ LG NP++Q+K+ E+D V K + VE ++ ++YLE V+KE LRL P V +FAR + +D ++ + KGT +I +LH +P Y+ PE+F P+RF E R+PY Y+PFSAGPRNCIGQKFA++EEK +L ++ ++ +++ QK E++ +LI + NG
Sbjct: 181 INQEAFNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNG 512
The following BLAST results are available for this feature:
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