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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059347 ID=TCONS_00059347|Name=TCONS_00059347|organism=Clytia hemisphaerica|type=transcript|length=1690bp
ATTTAGACAGCTATTTCTCTGCAGAAATCCTTTTCTATAAAGCTTTATCg
taatttcatattttgatagTACATCAAATGAAAACGTTtgttttaaaatc
aaataaaaaaatcaatgtaATGATAAATGGTAAATGGTGGTACATGCAGT
ATGGTGGTGCGTgtcttcaaaagtttaaagaattATCGTTTCTTTAATTG
AATCTGTAAACCATTTTCAGATTTGTGTATGAGCTCAAAGCAAGCAGTCA
CATCTTCCATTTTCTGTGCGGCTTTAACTTCATAATTCAACATGACATGG
TACAGTAAAATCTTCTCTTCCAACATTGCAAACTTCTGACCAATGCAGTT
TCGTGGGCCTGCGCTGAAAGGAATATAACAATAAGGATTTCGCTTGACAT
ACTTTTCATCTGAAAATCGATCTGGATTGAATTTCTCCGGCTCATCCCAA
TATTCGGGGTTTGTATGTAAGGAAATGACATCAATCATTAATGTTGTTCC
CTTGGGAATGGACACATTGTAAATTTTGGTATCTTGTTCCAGCTCACGTG
CAAAGACAGCCACAGGTGGATGAAGACGTAAACCTTCTTTCACAACATAT
TCAAGATATTTGATTCCACGTATCTTTTCAACCAAATCTTCTTCCTTGTC
AGCTACTTTATCAATCTCCTCATGAAGCTTTTGTTGAATTTTTGGATTTA
ACCCAAGTCGGAATAAAGTCCAACTCAATCCTGCAGCAGTTGTATCATGA
CCTTCAAACATAAAGGTATCCACCTCTTCTCGGATCCCCTCAATATCAAT
TTCTCCTTTCTCGTACAAATCCAAAAGCATATCCATAAATGCTTTTATTT
TTCGGCCAGTACTTTCAGCTCCAGATTGCCTTGCTTTGATATTATCATTG
ATCACATTAGCTGTGAAACTGTGAAGAATACTCAAATGTTCTTTAAACTG
TTTTCCTTGACTAGTTCTCCAGTATAGGGGCTCTGGCCAAAGCCATGGTG
ATTTCTGGCGCTGTTGTAACAATTTGCTCCCAGCATTTATTGCATTTACA
TACTCAGATTCTGCATGATCTTGAGCATTAACAGATACGCCCATGGCTGT
TTCACATATGATATCAAGAGTAGCCAAACTAACAGGAATCTGAGCATCGA
AAGCTTCCCCAGTGACAGCATAGGATTTCAGGTTCTGGACTAAGATTTGT
GATTGttttatgaaaatcttttgaaaatcatttaGGATTGTGAAATGAAA
GGATGGAGTGATTGCTCTTCTGCGTGATTTCCATTTTTGATGAGTTGATG
TTAAAAGGCCGGTCCCAAGCCAGGGATGCAAGGTATGATAGAGATAAGAT
TTGGTGATGATCTCTTGGCTCTTTAGCACAAGTTCTGCACCCTCTACTTT
TGCAACCCATAGAGCCGGATGAAAGAAAAACCACAAAACAAAACAGTAAT
CATTATCAACAGCATACTTTCTGATTTGTTTAAAGAATTTATGAGCTTCT
GTTTCTAAGTGCAAACATGAACCAAGGATAGGATAATAAGGAGCCATCTT
TAAACCCTCAAACCTTGATATTTTCATCTTCCAAAACAACATAAGGattg
aaaatatcaaaagaagTACCACTGTAAATATAAGTAACATTTTTATAact
ggaagaaaaacaaaaaataatgaattaaaaTGTGTCTCAT Run BLAST on NCBI transcript from alignment at scaffold_326:446290..449149+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059347 ID=TCONS_00059347|Name=TCONS_00059347|organism=Clytia hemisphaerica|type=transcript|length=2860bp|location=Sequence derived from alignment at scaffold_326:446290..449149+ (Clytia hemisphaerica)
ATTTAGACAGCTATTTCTCTGCAGAAATCCTTTTCTATAAAGCTTTATCg
taatttcatattttgatagTACATCAAATGAAAACGTTtgttttaaaatc
aaataaaaaaatcaatgtaATGATAAATGGTAAATGGTGGTACATGCAGT
ATGGTGGTGCGTgtcttcaaaagtttaaagaattATCGTTTCTTTAATTG
AATCTGTAAACCATTTTCAGATTTGTGTATGAGCTCAAAGCAAGCAGTCA
CATCTTCCATTTTCTGTGCGGCTTTAACTTCATAATTCAACATGACATGG
TACAGTAAAATCTTCTCTTCCAACATTGCAAACTTCTGACCAATGCAGTT
TCGTGGGCCTGCGCTGAAAGGAATATAACAATAAGGATTTCGCTTGACAT
ACTTTTCATCTGAAAATCGATCTGGATTGAATTTCTCCGGCTCATCCCAA
TATTCGGGGTTTGTATGTAAGGAAATGACATCAATCATTAATGTTGTTCC
CTTGGGAATGGACACATTGTAAATTTTGGTATCTTGTTCCAGCTCACGTG
CAAAGACAGCCACAGGTGGATGAAGACGTAAACCTTCTTTCACAACATAT
TCAAGATATTTGATTCCACGTATCTTTTCAACCAAATCTTCTTCCTTGTC
AGCTACTTTATCAATCTCCTCATGAAGCTTTTGTTGAATTTTTGGATTTA
ACCCAAGTCGGAATAAAGTCCAACTCAATCCTGCAGCAGTTGTATCATGA
CCTTCAAACATAAAGGTATCCACCTCTTCTCGGATCCCCTCAATATCAAT
TTCTCCTTTCTCGTACAAATCCAAAAGCATATCCATAAATGCTTTTATTT
TTCGGCCAGTACTTTCAGCTCCAGATTGCCTTGCTTTGATATTATCATTG
ATCACATTAGCTGTGAAACTGTGAAGAATACTCAAATGTTCTTTAAACTG
TTTTCCTTGACTAGTTCTCCAGTATAGGGGCTCTGGCCAAAGCCATGGTG
ATTTCTGGCGCTGTTGTAACAATTTGCTCCCAGCATTTATTGCATTTACA
TACTCAGATTCTGCATGATCTTGAGCATTAACAGATACGCCCATGGCTGT
TTCACATATGATATCAAGAGTAGCCAAACTAACAGGAATCTGAGCATCGA
AAGCTTCCCCAGTGACAGCATAGGATTTCAGGTTCTGAACCNAGAAATCC
TTTTCTATAAAGCTTTATCgtaatttcatattttgatagTACATCAAATG
AAAACGTTtgttttaaaatcaaataaaaaaatcaatgtaATGATAAATGG
TAAATGGTGGTACATGCAGTATGGTGGTGCGTgtcttcaaaagtttaaag
aattATCGTTTCTTTAATTGAATCTGTAAACCATTTTCAGATTTGTGTAT
GAGCTCAAAGCAAGCAGTCACATCTTCCATTTTCTGTGCGGCTTTAACTT
CATAATTCAACATGACATGGTACAGTAAAATCTTCTCTTCCAACATTGCA
AACTTCTGACCAATGCAGTTTCGTGGGCCTGCGCTGAAAGGAATATAACA
ATAAGGATTTCGCTTGACATACTTTTCATCTGAAAATCGATCTGGATTGA
ATTTCTCCGGCTCATCCCAATATTCGGGGTTTGTATGTAAGGAAATGACA
TCAATCATTAATGTTGTTCCCTTGGGAATGGACACATTGTAAATTTTGGT
ATCTTGTTCCAGCTCACGTGCAAAGACAGCCACAGGTGGATGAAGACGTA
AACCTTCTTTCACAACATATTCAAGATATTTGATTCCACGTATCTTTTCA
ACCAAATCTTCTTCCTTGTCAGCTACTTTATCAATCTCCTCATGAAGCTT
TTGTTGAATTTTTGGATTTAACCCAAGTTGGAATAAAGTCCAACTCAATC
CAGCAGCAGTTGTATCATGACCTTCAAACATAAAGGTATCCACCTCCTCT
CGAATCCCTTCAATATCAATTTCTCCTTTCTCGTACAAATCCAAAAGCAT
ATCCATAAATGCTTTTGTTTTTCGGCCAGCACTTTCAGCTCCAGATTGCC
TTGCTTTGATATTATCATTGATCACATTAGCTGTGAAACTGTGAAGAACA
CGTAAATGTTCTTTAAACTGTTTTCCTTGACTAGTTATCCAGTATATGGG
CTCTGGCCAAAGCCATGGTGATTTCTGGCGCTGTTGTAACAACTTGCTCC
CAGCATTTATTGCATTTACATACTCAGATTCTGCGTGATCTTGAGCATTA
ACAGATACACCCATGGCTGTTTCACATATGATATCAAGAGTAGCCAAACT
AACAGGAATCTGAGCATCAAAAGCTTCCCCAGTGACAGCATAGGATTTCA
GGTTCTGGACTAAGATTTGTGATTGttttatgaaaatcttttgaaaatca
tttaGGATTGTGAAATGAAAGGATGGAGTGATTGCTCTTCTGCGTGATTT
CCATTTTTGATGAGTTGATGTTAAAAGGCCGGTCCCAAGCCAGGGATGCA
AGGTATGATAGAGATAAGATTTGGTGATGATCTCTTGGCTCTTTAGCACA
AGTTCTGCACCCTCTACTTTTGCAACCCATAGAGCCGGATGAAAGAAAAA
CCACAAAACAAAACAGTAATCATTATCAACAGCATACTTTCTGATTTGTT
TAAAGAATTTATGAGCTTCTGTTTCTAAGTGCAAACATGAACCAAGGATA
GGATAATAAGGAGCCATCTTTAAACCCTCAAACCTTGATATTTTCATCTT
CCAAAACAACATAAGGattgaaaatatcaaaagaagTACCACTGTAAATA
TAAGTAACATTTTTATAactggaagaaaaacaaaaaataatgaattaaaa
TGTGTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059347-exon-scaffold_326-1491911889:446290..447470 | TCONS_00059347-exon-scaffold_326-1491911889:446290..447470 | Clytia hemisphaerica | exon |
| TCONS_00059347-exon-scaffold_326-1510915933:446290..447470 | TCONS_00059347-exon-scaffold_326-1510915933:446290..447470 | Clytia hemisphaerica | exon |
| TCONS_00059347-exon-scaffold_326-1575043694:446290..447470 | TCONS_00059347-exon-scaffold_326-1575043694:446290..447470 | Clytia hemisphaerica | exon |
| TCONS_00059347-exon-scaffold_326-1491911889:448641..449149 | TCONS_00059347-exon-scaffold_326-1491911889:448641..449149 | Clytia hemisphaerica | exon |
| TCONS_00059347-exon-scaffold_326-1510915933:448641..449149 | TCONS_00059347-exon-scaffold_326-1510915933:448641..449149 | Clytia hemisphaerica | exon |
| TCONS_00059347-exon-scaffold_326-1575043694:448641..449149 | TCONS_00059347-exon-scaffold_326-1575043694:448641..449149 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:446290..449149 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00059347 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 368.622 bits (945), Expect = 3.851e-120 Identity = 195/461 (42.30%), Postives = 293/461 (63.56%), Query Frame = -3
Query: 210 MAPYYPILGSCLHLETEAHKFFKQIRKYAVDNDYCFVLWFFFHPALWVA--KVEGAELVLKSQEIITKSYLYHTLHPWLGTGLLTSTHQKWKSRRRAITPSFHFTILNDFQKIFIKQSQILVQNLKSYAVTGEAFDAQIPVSLATLDIICETAMGVSVNAQDHAESEYVNAINAGSKLLQQRQKSPWLWPEPLYWRTSQGKQFKEHLSILHSFTANVI---------NDNIKARQSGAESTGRKIKAFMDMLLDLY--EKGEIDIEGIREEVDTFMFEGHDTTAAGLSWTLFRLGLNPKIQQKLHEEIDKVADKEED--LVEKIRGIKYLEYVVKEGLRLHPPVAVFARELEQDTKIYNVSIPKGTTLMIDVISLHTNPEYWDEPEKFNPDRFSDEKYVKRNPYCYIPFSAGPRNCIGQKFAMLEEKILLYHVMLNYEVKAAQKMEDVTACFELIHKSENG 1547
+A YP++G L ++ + +FF+QI +Y + + +L + P VA E E++L S + I KS +Y L PWLG GLLTST KW+SRR+ +TP+FHFTIL DF I +Q+ ILV+ L+ + + EAF+ ++L LDIICETAMG ++ AQ + +SEYV A+ S+++ +R K PWLW + Y +G + K+ L ILH+FT +VI N++ + G+ + K +AF+D+LL + E + E IREEVDTFMFEGHDTTAA ++W+L+ LG NP++Q+K+ E+D V K + VE ++ ++YLE V+KE LRL P V +FAR + +D ++ + KGT +I +LH +P Y+ PE+F P+RF E R+PY Y+PFSAGPRNCIGQKFA++EEK +L ++ ++ +++ QK E++ +LI + NG
Sbjct: 53 VARAYPLVGHALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKH-INQEAFNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNG 512
The following BLAST results are available for this feature:
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