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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059284 ID=TCONS_00059284|Name=TCONS_00059284|organism=Clytia hemisphaerica|type=transcript|length=439bp
AGTTCATCTTGGAACAGATGCAATAACTGGCAAAACGAACATTACTCAAG
AATTTTGGGATTCCAGGATAGAGATGGAGAAAGATCTATCCGAAGGTCTA
GATGAACTTGGCTGGCCAAAGATAAGAGAGATGTTGAAAACTATGAGGAA
GAAATATTCTAAGGAGAACAATCATGATTCATATAACACTTTTTTGAAGG
AAGCCTCGATTGGATTGCAAGCCTTACAAATcgacaagaaaaaaaaatct
acttcagTATCGCCAATCTGCCACAAAAATACAGCCAACATGACTACCCC
AAGCCCTCATGATTCACAAATACTGAAATCGCCAATTGCAGATCAATTTT
GATAAGTGAAAGAGAAGAATTCGTTACAAACCAAGAAGACGAAGAAGACG
AGGAGGCAATTGAAGAAACTGCTCAAGTTCTCAAATCAG Run BLAST on NCBI protein sequence of TCONS_00059284-protein >TCONS_00059284-protein ID=TCONS_00059284-protein|Name=TCONS_00059284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
VHLGTDAITGKTNITQEFWDSRIEMEKDLSEGLDELGWPKIREMLKTMRK
KYSKENNHDSYNTFLKEASIGLQALQIDKKKKSTSVSPICHKNTANMTTP
SPHDSQILKSPIADQF Run BLAST on NCBI transcript from alignment at scaffold_324:15667..18241- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059284 ID=TCONS_00059284|Name=TCONS_00059284|organism=Clytia hemisphaerica|type=transcript|length=2575bp|location=Sequence derived from alignment at scaffold_324:15667..18241- (Clytia hemisphaerica)
AGTTCATCTTGGAACAGATGCAATAACTGGCAAAACGAACATTACTCAAG
AATTTTGGGATTCCAGGATAGAGATGGAGAAAGATCTATCCGAAGGTCTA
GATGAACTTGGCTGGCCAAAGATAAGAGAGATGTTGAAAACTATGAGGAA
GAAATATTCTAAGGAGAACAATCATGATTCATATAACACTTTTTTGAAGG
AAGCCTCGATTGGATTGCAAGCCTTACAAATCGACAAGAAAAAAAAATCT
ACTTCAGTATCGCCAATCTGCCACAAAAATACAGCCAACATGACTACCCC
AAGCCCTCATGATTCACAAATACTGAAATCGCCAATTGCAGATCAATTTT
GATAAGTGAAAGAGAAGAATTCGGTAAGGGTGTATTAATGATGAATTTTA
TTCAATTAATTTTATTTCAGCCCTGAGTTTTATTTTCACAGATCAATGGT
TTACTGTGCAGTTAAAAAATCCATTCCTTAGAATAGACTACCAATGTTCG
CGTCAATGAAGTAGTTATCCATTACTATACTACTTCTCTGGTACTTACAA
TGGGTAAGGAAAGGGTTAAACTTAGGAAGAAATAAGGGTAATTAGATCTT
GCACTCGAAATGTTTGAACAGATTTTCAATAACTTTTATGGTAAGATTGC
TGAAAAAACAAAGTCTAAAATTATCCCGACAGAAACAGAGTTCAACACAT
TCCTGAGCAACCCAAATCCAACCTCGTTTGAAATTTTACTTCCTACGCCT
GATGATATCCAAAAGTATATTGAAAAGCTCTCTGACAATAAAGCCACTGG
ACCAAACAGTATTCCAACTCAGATCCTAAAACTTATCTCACCTGAAATTA
AATTTATTCTTTCCAACAGGCTTAATGAATGCATAAACTCAGGTATTTTT
CCAGATTGTCTCAAATTAGCCACTGTAACTCCTGTTCATAAGAAGGACTC
TAAACTAAACGTTGAGAATTACAGACCTATTTCTTTACTGTCTAATATTA
GCAAAATATTTGAAAAAATTTTACATAACCAAATTTACTCCTTTCTCGAA
GATAACAATATTCTCTTTAAAAATCAATTTGGTTTCAGAAAAAATCATAA
CACCTCTCATGCTATTTCTGCCCTTACTGAGGAAATTAGATCAGCACTTG
ATGAAAACGAATTTGCAGTTGGAATATTTGTAGACCTTCAAAAAGCCTTC
GACACTGTTGGACATGACATTCTCCTAAAAAAACTTGAACACTATGGCAT
CAGAGAAAACCCTCTACAACTTTTTAAGTCCTACCTCTCTGGACGCAAGC
AATGTGTTAATATCAGAGGTTGCCACTCAGATTTTCTAGACATAAAACAT
GGTGTGCCTCAAGGTTCTATCCTAGGACCTCTCCTCTTTTTGATTTATAT
TAACGATCTGAACAAAACAATAATTCACTCGAAAACTTTTCATTTTGCTG
ATGACACAGGATTACTTTGTCGGAGCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGTCTCACAG
CCTGAAAAACTCATTTGCTAGGAGCTGGAACTCGATAGTTCCCCGTATCA
ATCCTTTCAACTCTGATGTGATCTCAAAGCACACCCTCAAACAGAACATA
AAGGCTAAACTATTGTTTGATATGGTTTAATCGTTTTTCATTGTTGTTTC
TTCTCAGGTATCTGCGACCATTGTGACCACCCTTGACATGTCATCAATAC
AACCAGTCAGCGTAACTGCTCCATTTGACAGCTTGCCCTCCCTCTCTCGT
TATTTTCTCTTTATCTTATCCCCCTCTTATGCAGAGTCTTCTTCTTTTTT
CATCATCAGTCCTTTTGACGTTCTATATTTAACCATTATCTCACCTACAT
TTTCACTATAGGGACTTATTTTATTTTTTTCCTCGTGTCTCCAGTAATTA
GGTTTTATTTCTAAAAAAGTTTTTTTGATTTATTACATTATATAACCATT
AGATGATTTTATTTTCATTTTAGTTAGATATCATTATTTTGTTAGATACC
TTTTTGCAGCATAAATAGTGCTGTATTTTTATTATTTACGGTTTTAGTGA
ATAGGTTTCCATATAATTTCTAGCTTTTAGTAGTTAACCTTATGGTTTTG
CCTCTCGTGAAGCTATATAATTTACTTATGCTTCTCCAGATATTTATCAC
GCCGTATGGTGGTTTGTACAAAATGTATATAGTTTTTAACGAGTCCTTAA
AAAAAAGAAAATATCTTATCTATCTTAAATAAAACAAATGAAATCAACTT
TCATTTCAGTTACAAACCAAGAAGACGAAGAAGACGAGGAGGCAATTGAA
GAAACTGCTCAAGTTCTCAAATCAG Coding sequence (CDS) from alignment at scaffold_324:15667..18241- >TCONS_00059284 ID=TCONS_00059284|Name=TCONS_00059284|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_324:15667..18241- (Clytia hemisphaerica)
GTTCATCTTGGAACAGATGCAATAACTGGCAAAACGAACATTACTCAAGA
ATTTTGGGATTCCAGGATAGAGATGGAGAAAGATCTATCCGAAGGTCTAG
ATGAACTTGGCTGGCCAAAGATAAGAGAGATGTTGAAAACTATGAGGAAG
AAATATTCTAAGGAGAACAATCATGATTCATATAACACTTTTTTGAAGGA
AGCCTCGATTGGATTGCAAGCCTTACAAATCGACAAGAAAAAAAAATCTA
CTTCAGTATCGCCAATCTGCCACAAAAATACAGCCAACATGACTACCCCA
AGCCCTCATGATTCACAAATACTGAAATCGCCAATTGCAGATCAATTTTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059284-exon-scaffold_324-1575043694:17869..18241 | TCONS_00059284-exon-scaffold_324-1575043694:17869..18241 | Clytia hemisphaerica | exon |
| TCONS_00059284-exon-scaffold_324-1575043694:15667..15732 | TCONS_00059284-exon-scaffold_324-1575043694:15667..15732 | Clytia hemisphaerica | exon |
| TCONS_00059284-exon-scaffold_324-1510915933:17869..18241 | TCONS_00059284-exon-scaffold_324-1510915933:17869..18241 | Clytia hemisphaerica | exon |
| TCONS_00059284-exon-scaffold_324-1510915933:15667..15732 | TCONS_00059284-exon-scaffold_324-1510915933:15667..15732 | Clytia hemisphaerica | exon |
| TCONS_00059284-exon-scaffold_324-1491911889:17869..18241 | TCONS_00059284-exon-scaffold_324-1491911889:17869..18241 | Clytia hemisphaerica | exon |
| TCONS_00059284-exon-scaffold_324-1491911889:15667..15732 | TCONS_00059284-exon-scaffold_324-1491911889:15667..15732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_324 | supercontig | scaffold_324:15667..18241 - |
Blast
The following BLAST results are available for this feature:
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